No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g04910 FvH4_3g04910 FvH4_3g04910 FvH4_3g04910 |
| malus_domestica | MD05G1314800.v1.1 MD10G1296200.v1.1 |
| prunus_persica | Prupe.4G044400_v2.0.a1 Prupe.4G044400_v2.0.a1 |
| pyrus_communis | pycom05g29260 pycom10g24870 |
| rosa_chinensis | RchiOBHm_Chr5g0008071 |
| rosa_laevigata | RLG00000031533 |
| rosa_multiflora | Rmu_sc0001626.1_g000002 Rmu_sc0017465.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00068410 |
| rosa_rugosa | Rorug04G0433200 |
| rosa_samantha | Rh5AG061200 Rh5BG058000 Rh5CG068100 Rh5DG057200 |
| rosa_wichuraiana | Rw5G005940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1463 |
| AccI | GTMKAC | 1 cut(s) | 1177 |
| AccII | CGCG | 1 cut(s) | 1623 |
| AciI | CCGC | 3 cut(s) | 204, 231, 1043 |
| AclWI | GGATC | 1 cut(s) | 1998 |
| AcsI | RAATTY | 5 cut(s) | 277, 487, 528, 539, 1457 |
| AcuI | CTGAAG | 1 cut(s) | 202 |
| AcvI | CACGTG | 1 cut(s) | 1120 |
| AfaI | GTAC | 1 cut(s) | 791 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 923, 1660, 2024 |
| AflIII | ACRYGT | 3 cut(s) | 304, 1119, 1697 |
| AgsI | TTSAA | 6 cut(s) | 113, 565, 641, 664, 909, 1644 |
| AjnI | CCWGG | 1 cut(s) | 1348 |
| AluBI | AGCT | 8 cut(s) | 173, 584, 725, 1070, 1430, 1538, 1886, 2140 |
| AluI | AGCT | 8 cut(s) | 173, 584, 725, 1070, 1430, 1538, 1886, 2140 |
| Alw21I | GWGCWC | 2 cut(s) | 1819, 1855 |
| Alw26I | GTCTC | 1 cut(s) | 857 |
| Alw44I | GTGCAC | 1 cut(s) | 1851 |
| AlwI | GGATC | 1 cut(s) | 1998 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 274, 611 |
| Ama87I | CYCGRG | 2 cut(s) | 235, 894 |
| AoxI | GGCC | 3 cut(s) | 325, 1244, 1567 |
| ApaLI | GTGCAC | 1 cut(s) | 1851 |
| ApeKI | GCWGC | 3 cut(s) | 1883, 1913, 2145 |
| ApoI | RAATTY | 5 cut(s) | 277, 487, 528, 539, 1457 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1099, 1131 |
| AseI | ATTAAT | 1 cut(s) | 1728 |
| AspS9I | GGNCC | 5 cut(s) | 239, 1052, 1567, 1720, 1874 |
| AsuC2I | CCSGG | 2 cut(s) | 144, 1964 |
| AsuHPI | GGTGA | 4 cut(s) | 260, 455, 1349, 2050 |
| AsuII | TTCGAA | 3 cut(s) | 38, 827, 2093 |
| AvaI | CYCGRG | 2 cut(s) | 235, 894 |
| AvaII | GGWCC | 4 cut(s) | 239, 1052, 1720, 1874 |
| BaeGI | GKGCMC | 1 cut(s) | 1855 |
| BbrPI | CACGTG | 1 cut(s) | 1120 |
| Bbv12I | GWGCWC | 2 cut(s) | 1819, 1855 |
| BbvI | GCAGC | 3 cut(s) | 1895, 1900, 2157 |
| BccI | CCATC | 6 cut(s) | 64, 677, 874, 1126, 1210, 1974 |
| BceAI | ACGGC | 1 cut(s) | 217 |
| BciT130I | CCWGG | 1 cut(s) | 1350 |
| BciVI | GTATCC | 1 cut(s) | 767 |
| BclI | TGATCA | 2 cut(s) | 886, 1339 |
| BcnI | CCSGG | 2 cut(s) | 144, 1964 |
| BcoDI | GTCTC | 1 cut(s) | 857 |
| BfaI | CTAG | 5 cut(s) | 351, 669, 1071, 1140, 2048 |
| BfmI | CTRYAG | 4 cut(s) | 282, 1065, 1188, 1994 |
| BfuI | GTATCC | 1 cut(s) | 767 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1575 |
| BglII | AGATCT | 1 cut(s) | 1061 |
| BisI | GCNGC | 4 cut(s) | 232, 1884, 1914, 2146 |
| BlsI | GCNGC | 4 cut(s) | 233, 1885, 1915, 2147 |
| Bme1390I | CCNGG | 3 cut(s) | 144, 1350, 1964 |
| Bme18I | GGWCC | 4 cut(s) | 239, 1052, 1720, 1874 |
| BmeT110I | CYCGRG | 2 cut(s) | 235, 894 |
| BmgT120I | GGNCC | 5 cut(s) | 239, 1052, 1567, 1720, 1874 |
| BmiI | GGNNCC | 4 cut(s) | 148, 240, 241, 1053 |
| BmrFI | CCNGG | 3 cut(s) | 144, 1350, 1964 |
| BmrI | ACTGGG | 2 cut(s) | 1324, 2013 |
| BmsI | GCATC | 6 cut(s) | 1126, 1724, 1882, 1921, 1957, 2065 |
| BmuI | ACTGGG | 2 cut(s) | 1324, 2013 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1050 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 918, 950 |
| Bpu14I | TTCGAA | 3 cut(s) | 38, 827, 2093 |
| BpuEI | CTTGAG | 1 cut(s) | 936 |
| BpuMI | CCSGG | 2 cut(s) | 144, 1964 |
| BsaAI | YACGTR | 2 cut(s) | 1120, 1700 |
| BsaJI | CCNNGG | 2 cut(s) | 1452, 1962 |
| BsaWI | WCCGGW | 1 cut(s) | 1876 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 923, 1660, 2024 |
| Bse118I | RCCGGY | 1 cut(s) | 227 |
| Bse1I | ACTGG | 4 cut(s) | 787, 1330, 1570, 2019 |
| Bse3DI | GCAATG | 4 cut(s) | 1117, 1324, 1710, 1941 |
| BseBI | CCWGG | 1 cut(s) | 1350 |
| BseDI | CCNNGG | 2 cut(s) | 1452, 1962 |
| BseGI | GGATG | 4 cut(s) | 889, 1141, 1402, 1972 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 923, 1660, 2024 |
| BseMI | GCAATG | 4 cut(s) | 1117, 1324, 1710, 1941 |
| BseMII | CTCAG | 2 cut(s) | 717, 756 |
| BseNI | ACTGG | 4 cut(s) | 787, 1330, 1570, 2019 |
| BseRI | GAGGAG | 1 cut(s) | 1052 |
| BseSI | GKGCMC | 1 cut(s) | 1855 |
| BseXI | GCAGC | 3 cut(s) | 1895, 1900, 2157 |
| BsgI | GTGCAG | 1 cut(s) | 1509 |
| Bsh1236I | CGCG | 1 cut(s) | 1623 |
| BshFI | GGCC | 3 cut(s) | 327, 1246, 1569 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1819, 1855 |
| BsiHKCI | CYCGRG | 2 cut(s) | 235, 894 |
| BsiSI | CCGG | 4 cut(s) | 144, 228, 1877, 1964 |
| BslFI | GGGAC | 3 cut(s) | 224, 225, 2001 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 923, 1660, 2024 |
| BsmAI | GTCTC | 1 cut(s) | 857 |
| BsmFI | GGGAC | 3 cut(s) | 224, 225, 2001 |
| BsmI | GAATGC | 3 cut(s) | 670, 1638, 1686 |
| BsnI | GGCC | 3 cut(s) | 327, 1246, 1569 |
| BsoBI | CYCGRG | 2 cut(s) | 235, 894 |
| Bsp119I | TTCGAA | 3 cut(s) | 38, 827, 2093 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1819, 1855 |
| Bsp143I | GATC | 8 cut(s) | 256, 463, 886, 1061, 1339, 1435, 1494, 2003 |
| Bsp68I | TCGCGA | 1 cut(s) | 1623 |
| BspACI | CCGC | 3 cut(s) | 204, 231, 1043 |
| BspANI | GGCC | 3 cut(s) | 327, 1246, 1569 |
| BspCNI | CTCAG | 2 cut(s) | 718, 757 |
| BspFNI | CGCG | 1 cut(s) | 1623 |
| BspLI | GGNNCC | 4 cut(s) | 148, 240, 241, 1053 |
| BspPI | GGATC | 1 cut(s) | 1998 |
| BspQI | GCTCTTC | 1 cut(s) | 1476 |
| BspT104I | TTCGAA | 3 cut(s) | 38, 827, 2093 |
| BsrDI | GCAATG | 4 cut(s) | 1117, 1324, 1710, 1941 |
| BsrFI | RCCGGY | 1 cut(s) | 227 |
| BsrI | ACTGG | 4 cut(s) | 787, 1330, 1570, 2019 |
| BssAI | RCCGGY | 1 cut(s) | 227 |
| BssECI | CCNNGG | 2 cut(s) | 1452, 1962 |
| BssMI | GATC | 8 cut(s) | 256, 463, 886, 1061, 1339, 1435, 1494, 2003 |
| BssT1I | CCWWGG | 1 cut(s) | 1452 |
| Bst2UI | CCWGG | 1 cut(s) | 1350 |
| Bst4CI | ACNGT | 5 cut(s) | 607, 905, 1524, 1857, 1905 |
| Bst6I | CTCTTC | 4 cut(s) | 166, 1296, 1476, 1734 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1584 |
| BstBAI | YACGTR | 2 cut(s) | 1120, 1700 |
| BstBI | TTCGAA | 3 cut(s) | 38, 827, 2093 |
| BstC8I | GCNNGC | 7 cut(s) | 229, 762, 1488, 1768, 1851, 2055, 2150 |
| BstDEI | CTNAG | 3 cut(s) | 174, 726, 765 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 921 |
| BstF5I | GGATG | 4 cut(s) | 889, 1141, 1402, 1972 |
| BstFNI | CGCG | 1 cut(s) | 1623 |
| BstKTI | GATC | 8 cut(s) | 259, 466, 889, 1064, 1342, 1438, 1497, 2006 |
| BstMAI | GTCTC | 1 cut(s) | 857 |
| BstMBI | GATC | 8 cut(s) | 256, 463, 886, 1061, 1339, 1435, 1494, 2003 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 179, 1575, 1584, 1892, 1967 |
| BstNI | CCWGG | 1 cut(s) | 1350 |
| BstNSI | RCATGY | 2 cut(s) | 308, 2134 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1050 |
| BstSCI | CCNGG | 3 cut(s) | 142, 1348, 1962 |
| BstSFI | CTRYAG | 4 cut(s) | 282, 1065, 1188, 1994 |
| BstSLI | GKGCMC | 1 cut(s) | 1855 |
| BstUI | CGCG | 1 cut(s) | 1623 |
| BstV1I | GCAGC | 3 cut(s) | 1895, 1900, 2157 |
| BstX2I | RGATCY | 2 cut(s) | 1061, 2003 |
| BstYI | RGATCY | 2 cut(s) | 1061, 2003 |
| BsuI | GTATCC | 1 cut(s) | 767 |
| BsuRI | GGCC | 3 cut(s) | 327, 1246, 1569 |
| BtsCI | GGATG | 4 cut(s) | 889, 1141, 1402, 1972 |
| BtsIMutI | CAGTG | 1 cut(s) | 718 |
| BtuMI | TCGCGA | 1 cut(s) | 1623 |
| Cac8I | GCNNGC | 7 cut(s) | 229, 762, 1488, 1768, 1851, 2055, 2150 |
| CaiI | CAGNNNCTG | 2 cut(s) | 274, 611 |
| Cfr10I | RCCGGY | 1 cut(s) | 227 |
| Cfr13I | GGNCC | 5 cut(s) | 239, 1052, 1567, 1720, 1874 |
| CseI | GACGC | 1 cut(s) | 375 |
| Csp6I | GTAC | 1 cut(s) | 790 |
| CviAII | CATG | 8 cut(s) | 305, 545, 992, 1158, 1355, 1549, 1595, 2131 |
| CviQI | GTAC | 1 cut(s) | 790 |
| DdeI | CTNAG | 3 cut(s) | 174, 726, 765 |
| DpnI | GATC | 8 cut(s) | 258, 465, 888, 1063, 1341, 1437, 1496, 2005 |
| DpnII | GATC | 8 cut(s) | 256, 463, 886, 1061, 1339, 1435, 1494, 2003 |
| Eam1104I | CTCTTC | 4 cut(s) | 166, 1296, 1476, 1734 |
| EarI | CTCTTC | 4 cut(s) | 166, 1296, 1476, 1734 |
| EciI | GGCGGA | 1 cut(s) | 1058 |
| Eco130I | CCWWGG | 1 cut(s) | 1452 |
| Eco147I | AGGCCT | 2 cut(s) | 327, 1246 |
| Eco47I | GGWCC | 4 cut(s) | 239, 1052, 1720, 1874 |
| Eco57I | CTGAAG | 1 cut(s) | 202 |
| Eco72I | CACGTG | 1 cut(s) | 1120 |
| Eco88I | CYCGRG | 2 cut(s) | 235, 894 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 921 |
| EcoO109I | RGGNCCY | 2 cut(s) | 239, 1052 |
| EcoRI | GAATTC | 2 cut(s) | 277, 539 |
| EcoRII | CCWGG | 1 cut(s) | 1348 |
| EcoT14I | CCWWGG | 1 cut(s) | 1452 |
| ErhI | CCWWGG | 1 cut(s) | 1452 |
| FaeI | CATG | 8 cut(s) | 308, 548, 995, 1161, 1358, 1552, 1598, 2134 |
| FaqI | GGGAC | 3 cut(s) | 224, 225, 2001 |
| FatI | CATG | 8 cut(s) | 304, 544, 991, 1157, 1354, 1548, 1594, 2130 |
| FauI | CCCGC | 1 cut(s) | 197 |
| FbaI | TGATCA | 2 cut(s) | 886, 1339 |
| FblI | GTMKAC | 1 cut(s) | 1177 |
| Fnu4HI | GCNGC | 4 cut(s) | 232, 1884, 1914, 2146 |
| FokI | GGATG | 4 cut(s) | 896, 1148, 1409, 1979 |
| Fsp4HI | GCNGC | 4 cut(s) | 232, 1884, 1914, 2146 |
| FspBI | CTAG | 5 cut(s) | 351, 669, 1071, 1140, 2048 |
| GluI | GCNGC | 4 cut(s) | 232, 1884, 1914, 2146 |
| HaeIII | GGCC | 3 cut(s) | 327, 1246, 1569 |
| HapII | CCGG | 4 cut(s) | 144, 228, 1877, 1964 |
| HgaI | GACGC | 1 cut(s) | 375 |
| Hin1II | CATG | 8 cut(s) | 308, 548, 995, 1161, 1358, 1552, 1598, 2134 |
| HpaII | CCGG | 4 cut(s) | 144, 228, 1877, 1964 |
| HphI | GGTGA | 4 cut(s) | 260, 455, 1349, 2050 |
| Hpy166II | GTNNAC | 3 cut(s) | 1178, 1240, 1853 |
| Hpy188III | TCNNGA | 6 cut(s) | 351, 894, 953, 1622, 1644, 2007 |
| Hpy8I | GTNNAC | 3 cut(s) | 1178, 1240, 1853 |
| Hpy99I | CGWCG | 6 cut(s) | 170, 296, 391, 539, 658, 1901 |
| HpyAV | CCTTC | 6 cut(s) | 465, 1257, 1380, 1598, 1767, 2029 |
| HpyCH4III | ACNGT | 5 cut(s) | 607, 905, 1524, 1857, 1905 |
| HpyCH4IV | ACGT | 3 cut(s) | 1119, 1699, 2014 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 179, 1575, 1584, 1892, 1967 |
| HpyF3I | CTNAG | 3 cut(s) | 174, 726, 765 |
| HpySE526I | ACGT | 3 cut(s) | 1119, 1699, 2014 |
| Hsp92II | CATG | 8 cut(s) | 308, 548, 995, 1161, 1358, 1552, 1598, 2134 |
| KflI | GGGWCCC | 1 cut(s) | 239 |
| KroI | GCCGGC | 1 cut(s) | 227 |
| KroNI | GCCGGC | 1 cut(s) | 229 |
| Ksp22I | TGATCA | 2 cut(s) | 886, 1339 |
| Kzo9I | GATC | 8 cut(s) | 256, 463, 886, 1061, 1339, 1435, 1494, 2003 |
| LguI | GCTCTTC | 1 cut(s) | 1476 |
| LmnI | GCTCC | 2 cut(s) | 170, 2137 |
| Lsp1109I | GCAGC | 3 cut(s) | 1895, 1900, 2157 |
| LweI | GCATC | 6 cut(s) | 1126, 1724, 1882, 1921, 1957, 2065 |
| MaeI | CTAG | 5 cut(s) | 351, 669, 1071, 1140, 2048 |
| MaeII | ACGT | 3 cut(s) | 1119, 1699, 2014 |
| MaeIII | GTNAC | 8 cut(s) | 81, 197, 607, 1115, 1420, 1649, 1693, 2043 |
| MalI | GATC | 8 cut(s) | 258, 465, 888, 1063, 1341, 1437, 1496, 2005 |
| MboI | GATC | 8 cut(s) | 256, 463, 886, 1061, 1339, 1435, 1494, 2003 |
| MfeI | CAATTG | 5 cut(s) | 31, 405, 1794, 1825, 1917 |
| MflI | RGATCY | 2 cut(s) | 1061, 2003 |
| MhlI | GDGCHC | 2 cut(s) | 1819, 1855 |
| MlyI | GAGTC | 1 cut(s) | 260 |
| MmeI | TCCRAC | 2 cut(s) | 148, 2115 |
| MroNI | GCCGGC | 1 cut(s) | 227 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1359, 1538 |
| MspI | CCGG | 4 cut(s) | 144, 228, 1877, 1964 |
| MspR9I | CCNGG | 3 cut(s) | 144, 1350, 1964 |
| MunI | CAATTG | 5 cut(s) | 31, 405, 1794, 1825, 1917 |
| Mva1269I | GAATGC | 3 cut(s) | 670, 1638, 1686 |
| MvaI | CCWGG | 1 cut(s) | 1350 |
| MvnI | CGCG | 1 cut(s) | 1623 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 179, 1575, 1584, 1892, 1967 |
| NaeI | GCCGGC | 1 cut(s) | 229 |
| NciI | CCSGG | 2 cut(s) | 144, 1964 |
| NdeII | GATC | 8 cut(s) | 256, 463, 886, 1061, 1339, 1435, 1494, 2003 |
| NgoMIV | GCCGGC | 1 cut(s) | 227 |
| NlaIII | CATG | 8 cut(s) | 308, 548, 995, 1161, 1358, 1552, 1598, 2134 |
| NlaIV | GGNNCC | 4 cut(s) | 148, 240, 241, 1053 |
| NmuCI | GTSAC | 4 cut(s) | 81, 1115, 1649, 1693 |
| NruI | TCGCGA | 1 cut(s) | 1623 |
| NspI | RCATGY | 2 cut(s) | 308, 2134 |
| NspV | TTCGAA | 3 cut(s) | 38, 827, 2093 |
| PaeR7I | CTCGAG | 1 cut(s) | 894 |
| PceI | AGGCCT | 2 cut(s) | 327, 1246 |
| PciI | ACATGT | 1 cut(s) | 304 |
| PciSI | GCTCTTC | 1 cut(s) | 1476 |
| PctI | GAATGC | 3 cut(s) | 670, 1638, 1686 |
| PdiI | GCCGGC | 1 cut(s) | 229 |
| PfeI | GAWTC | 9 cut(s) | 40, 156, 188, 288, 824, 1163, 1184, 1325, 2090 |
| PflFI | GACNNNGTC | 1 cut(s) | 2013 |
| PfoI | TCCNGGA | 1 cut(s) | 142 |
| PkrI | GCNGC | 4 cut(s) | 233, 1885, 1915, 2147 |
| PleI | GAGTC | 1 cut(s) | 259 |
| PmaCI | CACGTG | 1 cut(s) | 1120 |
| PmlI | CACGTG | 1 cut(s) | 1120 |
| PpsI | GAGTC | 1 cut(s) | 259 |
| Ppu21I | YACGTR | 2 cut(s) | 1120, 1700 |
| PpuMI | RGGWCCY | 2 cut(s) | 239, 1052 |
| PscI | ACATGT | 1 cut(s) | 304 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1050 |
| PshBI | ATTAAT | 1 cut(s) | 1728 |
| PsiI | TTATAA | 1 cut(s) | 1463 |
| Psp5II | RGGWCCY | 2 cut(s) | 239, 1052 |
| Psp6I | CCWGG | 1 cut(s) | 1348 |
| PspCI | CACGTG | 1 cut(s) | 1120 |
| PspGI | CCWGG | 1 cut(s) | 1348 |
| PspN4I | GGNNCC | 4 cut(s) | 148, 240, 241, 1053 |
| PspPI | GGNCC | 5 cut(s) | 239, 1052, 1567, 1720, 1874 |
| PspPPI | RGGWCCY | 2 cut(s) | 239, 1052 |
| PstNI | CAGNNNCTG | 2 cut(s) | 274, 611 |
| PsuI | RGATCY | 2 cut(s) | 1061, 2003 |
| PsyI | GACNNNGTC | 1 cut(s) | 2013 |
| RruI | TCGCGA | 1 cut(s) | 1623 |
| RsaI | GTAC | 1 cut(s) | 791 |
| RsaNI | GTAC | 1 cut(s) | 790 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1359, 1538 |
| SapI | GCTCTTC | 1 cut(s) | 1476 |
| SatI | GCNGC | 4 cut(s) | 232, 1884, 1914, 2146 |
| Sau3AI | GATC | 8 cut(s) | 256, 463, 886, 1061, 1339, 1435, 1494, 2003 |
| Sau96I | GGNCC | 5 cut(s) | 239, 1052, 1567, 1720, 1874 |
| SchI | GAGTC | 1 cut(s) | 260 |
| ScrFI | CCNGG | 3 cut(s) | 144, 1350, 1964 |
| SduI | GDGCHC | 2 cut(s) | 1819, 1855 |
| SfaNI | GCATC | 6 cut(s) | 1126, 1724, 1882, 1921, 1957, 2065 |
| SfcI | CTRYAG | 4 cut(s) | 282, 1065, 1188, 1994 |
| Sfr274I | CTCGAG | 1 cut(s) | 894 |
| SfuI | TTCGAA | 3 cut(s) | 38, 827, 2093 |
| SinI | GGWCC | 4 cut(s) | 239, 1052, 1720, 1874 |
| SlaI | CTCGAG | 1 cut(s) | 894 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1359, 1538 |
| SmlI | CTYRAG | 2 cut(s) | 894, 951 |
| SmoI | CTYRAG | 2 cut(s) | 894, 951 |
| SseBI | AGGCCT | 2 cut(s) | 327, 1246 |
| SsiI | CCGC | 3 cut(s) | 204, 231, 1043 |
| SspMI | CTAG | 5 cut(s) | 351, 669, 1071, 1140, 2048 |
| StuI | AGGCCT | 2 cut(s) | 327, 1246 |
| StyD4I | CCNGG | 3 cut(s) | 142, 1348, 1962 |
| StyI | CCWWGG | 1 cut(s) | 1452 |
| TaaI | ACNGT | 5 cut(s) | 607, 905, 1524, 1857, 1905 |
| TaiI | ACGT | 3 cut(s) | 1122, 1702, 2017 |
| TaqII | GACCGA | 1 cut(s) | 1708 |
| TatI | WGTACW | 1 cut(s) | 789 |
| TauI | GCSGC | 1 cut(s) | 234 |
| TfiI | GAWTC | 9 cut(s) | 40, 156, 188, 288, 824, 1163, 1184, 1325, 2090 |
| TscAI | CASTG | 1 cut(s) | 718 |
| TseFI | GTSAC | 4 cut(s) | 81, 1115, 1649, 1693 |
| TseI | GCWGC | 3 cut(s) | 1883, 1913, 2145 |
| Tsp45I | GTSAC | 4 cut(s) | 81, 1115, 1649, 1693 |
| TspGWI | ACGGA | 3 cut(s) | 69, 154, 884 |
| TspRI | CASTG | 1 cut(s) | 718 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2013 |
| VneI | GTGCAC | 1 cut(s) | 1851 |
| VpaK11BI | GGWCC | 4 cut(s) | 239, 1052, 1720, 1874 |
| VspI | ATTAAT | 1 cut(s) | 1728 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 921 |
| XapI | RAATTY | 5 cut(s) | 277, 487, 528, 539, 1457 |
| XbaI | TCTAGA | 1 cut(s) | 350 |
| XceI | RCATGY | 2 cut(s) | 308, 2134 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 551, 1009, 1555 |
| XhoI | CTCGAG | 1 cut(s) | 894 |
| XmiI | GTMKAC | 1 cut(s) | 1177 |
| XspI | CTAG | 5 cut(s) | 351, 669, 1071, 1140, 2048 |