Rmu_sc0001626.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001626.1
Physical Location & Seq
Reverse (-)
4471 .. 7539
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001626.1_g000002.1.cds

Sequence Viewer

Length: 2001 bp
atgaaaaccctaatttcccaattcttcatcacctattccaagcctcaaccttttctcttccactttccaaatcaaaaaaaccagagctttcttcacatttccagaactaaatggccggacggtcccagaaccaataggttctcctccgtcagagctcattggggttcggaatcggcgagctacggcggctgggaggacctgaaacccgtcgttggcggcgagtcggatcagtttcgtaagtttctgagttctactggaattgatgatagaaggcatgtctttgtttttgtattaggtcttgtgtgtgctttcgcgatttctagggttagggtttcgtcgtttattgtggttccggcttcggttttgatttttggtcttgggttttcggttgggtttgttcgtagtggaggtgttggtgaagtgagcttaagtgggaataagagaaggagtaaagaagatgataacttagttgtttatattgagaaattgaggagtttggtggaggtttttgatgggtttagagttaaagttgatgatttgaagtgtgatatacagagggctattgattccagagggattacagttagtgatttggagaattatgttgaggaaatggggactgttagtttagtggcctcggatggcaggaagattgttgaggagtgtgttgaagatttggctaggtccaatgttgggtttgcggagaatcaaaagccaagtaagagaaagaaagaggctgttgaaatcggatatgcattgtggcagtacattggggatttatttaaggagaaattggctgatcctaagcctagtaaagtgaaaagcaatgctaagcgagagagtgtggagaaagtggggggtgatcagcttagaggcaatggttcgattcctaataaagtgggaaataatgagaaagagatggtttttgattctgttgatgacagtgtggggattgcaaattttggtcattctgaggattcgtttgataggtctgctttgaaggaaactggaaatagaagaatcaaacttgcttcatcaaatcaaaatatgggttcagaggaggtgagttggggtcctaacagaattacagagggcaaagagtataattatcagaataacagactgcagttcacgagcaatgaaaattttcctttggatgatcagttgtctggaaatgagagtgaactcccctccctttcatcttcatcaatttcagaggatgtattgtttgataggtacgttacagaagcaaatgatcttctaaaacaagccaaggacttcataaaggctacacataatgaagagcatgcagagattgtattgtacaggtcggccaaattactgtctaaagccatcactatgaagcccatgagtttgttggcggtgggccaattaggcaatacttaccttcttcacggagaaatgaagttaaggattagtcgacagttgagaatgcaccttacaagaagtgatccctcatcggttgagaaatggattagaatgcaagataaaatcactagtaaagatgatattgcatccgtcctcatcactgtgtgtgaagagtgcgaagaacttcttctggaagcaggcagaaagtatagactggcattatcaattgatgggaatgatgtaagagccctatataattggggtcttgcccttaccttccgtgcacagttgattgcagacattggacctggagcagcttttgatgctgatgaactgtttttggctgcaattgacaagtttgatgccatgatgtctaaaggaaatgcttatgcacctgatgctctgtttagatggggcatggcactacagcaaagatcgcgcctacggcctagcaatggtaaagagaaggtgaagttgctgcaacaagcaaagaggctgtatgaagatgcacttaatatggattcaaacaatgtccaagtaagacgagccttatcatcatgtatgtctgagcttagcagaggcacctttacttttaacaataccctaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

666

Amino Acids

74.68

Weight (kDa)

7.59

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1970
AccI GTMKAC 1 cut(s) 1441
AccII CGCG 2 cut(s) 314, 1828
AciI CCGC 4 cut(s) 186, 216, 701, 1382
AclWI GGATC 3 cut(s) 234, 794, 1466
AcoI YGGCCR 2 cut(s) 113, 1332
AcsI RAATTY 2 cut(s) 958, 1144
AdeI CACNNNGTG 1 cut(s) 1554
AfaI GTAC 3 cut(s) 767, 1238, 1325
AfiI CCNNNNNNNGG 3 cut(s) 212, 693, 1844
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 5 cut(s) 541, 671, 743, 1000, 1914
AhlI ACTAGT 1 cut(s) 1517
AjnI CCWGG 1 cut(s) 1696
AluBI AGCT 7 cut(s) 87, 155, 180, 426, 868, 1706, 1960
AluI AGCT 7 cut(s) 87, 155, 180, 426, 868, 1706, 1960
Alw21I GWGCWC 2 cut(s) 157, 1675
Alw44I GTGCAC 1 cut(s) 1671
AlwI GGATC 3 cut(s) 234, 794, 1466
AoxI GGCC 5 cut(s) 113, 633, 1332, 1387, 1835
ApaLI GTGCAC 1 cut(s) 1671
ApeKI GCWGC 3 cut(s) 1703, 1733, 1867
ApoI RAATTY 2 cut(s) 958, 1144
Asp700I GAANNNNTTC 3 cut(s) 1146, 1572, 1575
AspLEI GCGC 1 cut(s) 1830
AspS9I GGNCC 6 cut(s) 122, 196, 684, 1073, 1387, 1694
AsuHPI GGTGA 5 cut(s) 22, 428, 872, 1075, 1870
AvaII GGWCC 5 cut(s) 122, 196, 684, 1073, 1694
BaeGI GKGCMC 1 cut(s) 1675
BanI GGYRCC 1 cut(s) 1970
BanII GRGCYC 2 cut(s) 157, 1639
BauI CACGAG 1 cut(s) 1132
Bbv12I GWGCWC 2 cut(s) 157, 1675
BbvI GCAGC 3 cut(s) 1715, 1720, 1854
BccI CCATC 6 cut(s) 506, 635, 913, 1361, 1613, 1794
BceAI ACGGC 2 cut(s) 199, 1850
BciT130I CCWGG 1 cut(s) 1698
BclI TGATCA 2 cut(s) 862, 1159
BcuI ACTAGT 1 cut(s) 1517
BfaI CTAG 5 cut(s) 321, 681, 810, 1518, 1839
BfmI CTRYAG 2 cut(s) 1124, 1814
BfrI CTTAAG 1 cut(s) 427
BglI GCCNNNNNGGC 1 cut(s) 1395
BisI GCNGC 5 cut(s) 187, 217, 1704, 1734, 1868
BlpI GCTNAGC 2 cut(s) 831, 1961
BlsI GCNGC 5 cut(s) 188, 218, 1705, 1735, 1869
Bme1390I CCNGG 1 cut(s) 1698
Bme18I GGWCC 5 cut(s) 122, 196, 684, 1073, 1694
BmgT120I GGNCC 6 cut(s) 122, 196, 684, 1073, 1387, 1694
BmiI GGNNCC 4 cut(s) 124, 351, 1074, 1972
BmrFI CCNGG 1 cut(s) 1698
BmsI GCATC 5 cut(s) 1544, 1702, 1741, 1777, 1885
BpmI CTGGAG 1 cut(s) 1719
Bpu10I CCTNAGC 1 cut(s) 804
Bpu1102I GCTNAGC 2 cut(s) 831, 1961
BsaJI CCNNGG 2 cut(s) 636, 1272
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 693, 1844
Bse1I ACTGG 3 cut(s) 259, 1012, 1608
Bse3DI GCAATG 4 cut(s) 832, 883, 1144, 1849
BseBI CCWGG 1 cut(s) 1698
BseDI CCNNGG 2 cut(s) 636, 1272
BseGI GGATG 4 cut(s) 646, 1162, 1225, 1535
BseLI CCNNNNNNNGG 3 cut(s) 212, 693, 1844
BseMI GCAATG 4 cut(s) 832, 883, 1144, 1849
BseMII CTCAG 3 cut(s) 236, 963, 1947
BseNI ACTGG 3 cut(s) 259, 1012, 1608
BseRI GAGGAG 4 cut(s) 133, 505, 674, 1073
BseSI GKGCMC 1 cut(s) 1675
BseXI GCAGC 3 cut(s) 1715, 1720, 1854
BseYI CCCAGC 1 cut(s) 189
Bsh1236I CGCG 2 cut(s) 314, 1828
BshFI GGCC 5 cut(s) 115, 635, 1334, 1389, 1837
BshNI GGYRCC 1 cut(s) 1970
BsiHKAI GWGCWC 2 cut(s) 157, 1675
BsiSI CCGG 2 cut(s) 116, 353
BslFI GGGAC 2 cut(s) 108, 631
BslI CCNNNNNNNGG 3 cut(s) 212, 693, 1844
BsmFI GGGAC 2 cut(s) 108, 631
BsmI GAATGC 2 cut(s) 1458, 1506
BsnI GGCC 5 cut(s) 115, 635, 1334, 1389, 1837
Bsp1286I GDGCHC 3 cut(s) 157, 1639, 1675
Bsp1407I TGTACA 1 cut(s) 1323
Bsp143I GATC 7 cut(s) 226, 799, 862, 1159, 1255, 1471, 1823
Bsp1720I GCTNAGC 2 cut(s) 831, 1961
Bsp68I TCGCGA 1 cut(s) 314
BspACI CCGC 4 cut(s) 186, 216, 701, 1382
BspANI GGCC 5 cut(s) 115, 635, 1334, 1389, 1837
BspCNI CTCAG 3 cut(s) 237, 964, 1948
BspFNI CGCG 2 cut(s) 314, 1828
BspLI GGNNCC 4 cut(s) 124, 351, 1074, 1972
BspMAI CTGCAG 1 cut(s) 1128
BspPI GGATC 3 cut(s) 234, 794, 1466
BspQI GCTCTTC 1 cut(s) 1296
BspT107I GGYRCC 1 cut(s) 1970
BspTI CTTAAG 1 cut(s) 427
BsrDI GCAATG 4 cut(s) 832, 883, 1144, 1849
BsrGI TGTACA 1 cut(s) 1323
BsrI ACTGG 3 cut(s) 259, 1012, 1608
BssECI CCNNGG 2 cut(s) 636, 1272
BssMI GATC 7 cut(s) 226, 799, 862, 1159, 1255, 1471, 1823
BssSI CACGAG 1 cut(s) 1132
BssT1I CCWWGG 1 cut(s) 1272
Bst2BI CACGAG 1 cut(s) 1132
Bst2UI CCWGG 1 cut(s) 1698
Bst4CI ACNGT 9 cut(s) 122, 583, 622, 944, 1344, 1446, 1552, 1677, 1725
Bst6I CTCTTC 3 cut(s) 62, 1296, 1554
BstAFI CTTAAG 1 cut(s) 427
BstAPI GCANNNNNTGC 1 cut(s) 1787
BstAUI TGTACA 1 cut(s) 1323
BstC8I GCNNGC 3 cut(s) 178, 1308, 1588
BstDEI CTNAG 8 cut(s) 245, 466, 804, 831, 869, 972, 1956, 1961
BstF5I GGATG 4 cut(s) 646, 1162, 1225, 1535
BstFNI CGCG 2 cut(s) 314, 1828
BstHHI GCGC 1 cut(s) 1830
BstKTI GATC 7 cut(s) 229, 802, 865, 1162, 1258, 1474, 1826
BstMBI GATC 7 cut(s) 226, 799, 862, 1159, 1255, 1471, 1823
BstMWI GCNNNNNNNGC 6 cut(s) 186, 1395, 1712, 1787, 1825, 1834
BstNI CCWGG 1 cut(s) 1698
BstNSI RCATGY 2 cut(s) 278, 1310
BstSCI CCNGG 1 cut(s) 1696
BstSFI CTRYAG 2 cut(s) 1124, 1814
BstSLI GKGCMC 1 cut(s) 1675
BstUI CGCG 2 cut(s) 314, 1828
BstV1I GCAGC 3 cut(s) 1715, 1720, 1854
BsuRI GGCC 5 cut(s) 115, 635, 1334, 1389, 1837
BtsCI GGATG 4 cut(s) 646, 1162, 1225, 1535
BtsIMutI CAGTG 2 cut(s) 949, 1548
BtuMI TCGCGA 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 178, 1308, 1588
CfoI GCGC 1 cut(s) 1830
Cfr13I GGNCC 6 cut(s) 122, 196, 684, 1073, 1387, 1694
Csp6I GTAC 3 cut(s) 766, 1237, 1324
CviAII CATG 6 cut(s) 275, 1307, 1369, 1756, 1807, 1947
CviQI GTAC 3 cut(s) 766, 1237, 1324
DdeI CTNAG 8 cut(s) 245, 466, 804, 831, 869, 972, 1956, 1961
DpnI GATC 7 cut(s) 228, 801, 864, 1161, 1257, 1473, 1825
DpnII GATC 7 cut(s) 226, 799, 862, 1159, 1255, 1471, 1823
DraIII CACNNNGTG 1 cut(s) 1554
EaeI YGGCCR 2 cut(s) 113, 1332
Eam1104I CTCTTC 3 cut(s) 62, 1296, 1554
EarI CTCTTC 3 cut(s) 62, 1296, 1554
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 1272
Eco24I GRGCYC 2 cut(s) 157, 1639
Eco47I GGWCC 5 cut(s) 122, 196, 684, 1073, 1694
Eco53kI GAGCTC 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 155
EcoO109I RGGNCCY 2 cut(s) 196, 1073
EcoRII CCWGG 1 cut(s) 1696
EcoT14I CCWWGG 1 cut(s) 1272
EcoT22I ATGCAT 1 cut(s) 757
EcoT38I GRGCYC 2 cut(s) 157, 1639
ErhI CCWWGG 1 cut(s) 1272
FaeI CATG 6 cut(s) 278, 1310, 1372, 1759, 1810, 1950
FalI AAGNNNNNCTT 4 cut(s) 1560, 1592, 1884, 1916
FaqI GGGAC 2 cut(s) 108, 631
FatI CATG 6 cut(s) 274, 1306, 1368, 1755, 1806, 1946
FbaI TGATCA 2 cut(s) 862, 1159
FblI GTMKAC 1 cut(s) 1441
Fnu4HI GCNGC 5 cut(s) 187, 217, 1704, 1734, 1868
FokI GGATG 4 cut(s) 653, 1169, 1232, 1522
FriOI GRGCYC 2 cut(s) 157, 1639
Fsp4HI GCNGC 5 cut(s) 187, 217, 1704, 1734, 1868
FspBI CTAG 5 cut(s) 321, 681, 810, 1518, 1839
GlaI GCGC 1 cut(s) 1829
GluI GCNGC 5 cut(s) 187, 217, 1704, 1734, 1868
GsaI CCCAGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 1719
HaeIII GGCC 5 cut(s) 115, 635, 1334, 1389, 1837
HapII CCGG 2 cut(s) 116, 353
HhaI GCGC 1 cut(s) 1830
Hin1II CATG 6 cut(s) 278, 1310, 1372, 1759, 1810, 1950
Hin6I GCGC 1 cut(s) 1828
HinP1I GCGC 1 cut(s) 1828
HincII GTYRAC 1 cut(s) 1442
HindII GTYRAC 1 cut(s) 1442
HinfI GANTC 9 cut(s) 170, 221, 566, 706, 886, 929, 977, 1020, 1910
HpaII CCGG 2 cut(s) 116, 353
HphI GGTGA 5 cut(s) 22, 428, 872, 1075, 1870
Hpy166II GTNNAC 4 cut(s) 1131, 1184, 1442, 1673
Hpy188III TCNNGA 6 cut(s) 102, 313, 570, 1132, 1170, 1580
Hpy8I GTNNAC 4 cut(s) 1131, 1184, 1442, 1673
Hpy99I CGWCG 2 cut(s) 212, 340
HpyAV CCTTC 6 cut(s) 264, 438, 994, 1418, 1675, 1849
HpyCH4III ACNGT 9 cut(s) 122, 583, 622, 944, 1344, 1446, 1552, 1677, 1725
HpyCH4IV ACGT 1 cut(s) 1239
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 1395, 1712, 1787, 1825, 1834
HpyF3I CTNAG 8 cut(s) 245, 466, 804, 831, 869, 972, 1956, 1961
HpySE526I ACGT 1 cut(s) 1239
Hsp92II CATG 6 cut(s) 278, 1310, 1372, 1759, 1810, 1950
HspAI GCGC 1 cut(s) 1828
Ksp22I TGATCA 2 cut(s) 862, 1159
Kzo9I GATC 7 cut(s) 226, 799, 862, 1159, 1255, 1471, 1823
LguI GCTCTTC 1 cut(s) 1296
LmnI GCTCC 1 cut(s) 1700
Lsp1109I GCAGC 3 cut(s) 1715, 1720, 1854
LweI GCATC 5 cut(s) 1544, 1702, 1741, 1777, 1885
MaeI CTAG 5 cut(s) 321, 681, 810, 1518, 1839
MaeII ACGT 1 cut(s) 1239
MaeIII GTNAC 1 cut(s) 1240
MalI GATC 7 cut(s) 228, 801, 864, 1161, 1257, 1473, 1825
MboI GATC 7 cut(s) 226, 799, 862, 1159, 1255, 1471, 1823
MfeI CAATTG 2 cut(s) 1614, 1737
MhlI GDGCHC 3 cut(s) 157, 1639, 1675
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 757
MroXI GAANNNNTTC 3 cut(s) 1146, 1572, 1575
MseI TTAA 6 cut(s) 428, 525, 783, 1430, 1902, 1983
MslI CAYNNNNRTG 2 cut(s) 1358, 1550
MspCI CTTAAG 1 cut(s) 427
MspI CCGG 2 cut(s) 116, 353
MspR9I CCNGG 1 cut(s) 1698
MunI CAATTG 2 cut(s) 1614, 1737
Mva1269I GAATGC 2 cut(s) 1458, 1506
MvaI CCWGG 1 cut(s) 1698
MvnI CGCG 2 cut(s) 314, 1828
MwoI GCNNNNNNNGC 6 cut(s) 186, 1395, 1712, 1787, 1825, 1834
NdeII GATC 7 cut(s) 226, 799, 862, 1159, 1255, 1471, 1823
NlaIII CATG 6 cut(s) 278, 1310, 1372, 1759, 1810, 1950
NlaIV GGNNCC 4 cut(s) 124, 351, 1074, 1972
NruI TCGCGA 1 cut(s) 314
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 2 cut(s) 278, 1310
PaeI GCATGC 1 cut(s) 1310
PciSI GCTCTTC 1 cut(s) 1296
PcsI WCGNNNNNNNCGW 2 cut(s) 173, 216
PctI GAATGC 2 cut(s) 1458, 1506
PdmI GAANNNNTTC 3 cut(s) 1146, 1572, 1575
PfeI GAWTC 8 cut(s) 170, 566, 706, 886, 929, 977, 1020, 1910
PkrI GCNGC 5 cut(s) 188, 218, 1705, 1735, 1869
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PpuMI RGGWCCY 2 cut(s) 196, 1073
Psp124BI GAGCTC 1 cut(s) 157
Psp5II RGGWCCY 2 cut(s) 196, 1073
Psp6I CCWGG 1 cut(s) 1696
PspFI CCCAGC 1 cut(s) 189
PspGI CCWGG 1 cut(s) 1696
PspN4I GGNNCC 4 cut(s) 124, 351, 1074, 1972
PspPI GGNCC 6 cut(s) 122, 196, 684, 1073, 1387, 1694
PspPPI RGGWCCY 2 cut(s) 196, 1073
PstI CTGCAG 1 cut(s) 1128
RruI TCGCGA 1 cut(s) 314
RsaI GTAC 3 cut(s) 767, 1238, 1325
RsaNI GTAC 3 cut(s) 766, 1237, 1324
RseI CAYNNNNRTG 2 cut(s) 1358, 1550
SacI GAGCTC 1 cut(s) 157
SalI GTCGAC 1 cut(s) 1440
SapI GCTCTTC 1 cut(s) 1296
SaqAI TTAA 6 cut(s) 428, 525, 783, 1430, 1902, 1983
SatI GCNGC 5 cut(s) 187, 217, 1704, 1734, 1868
Sau3AI GATC 7 cut(s) 226, 799, 862, 1159, 1255, 1471, 1823
Sau96I GGNCC 6 cut(s) 122, 196, 684, 1073, 1387, 1694
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 1698
SduI GDGCHC 3 cut(s) 157, 1639, 1675
SfaNI GCATC 5 cut(s) 1544, 1702, 1741, 1777, 1885
SfcI CTRYAG 2 cut(s) 1124, 1814
SinI GGWCC 5 cut(s) 122, 196, 684, 1073, 1694
SmiMI CAYNNNNRTG 2 cut(s) 1358, 1550
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
SpeI ACTAGT 1 cut(s) 1517
SphI GCATGC 1 cut(s) 1310
SsiI CCGC 4 cut(s) 186, 216, 701, 1382
SspMI CTAG 5 cut(s) 321, 681, 810, 1518, 1839
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 1696
StyI CCWWGG 1 cut(s) 1272
TaaI ACNGT 9 cut(s) 122, 583, 622, 944, 1344, 1446, 1552, 1677, 1725
TaiI ACGT 1 cut(s) 1242
TaqI TCGA 2 cut(s) 884, 1441
TatI WGTACW 2 cut(s) 765, 1323
TauI GCSGC 2 cut(s) 189, 219
TfiI GAWTC 8 cut(s) 170, 566, 706, 886, 929, 977, 1020, 1910
Tru1I TTAA 6 cut(s) 428, 525, 783, 1430, 1902, 1983
Tru9I TTAA 6 cut(s) 428, 525, 783, 1430, 1902, 1983
TscAI CASTG 2 cut(s) 949, 1555
TseI GCWGC 3 cut(s) 1703, 1733, 1867
TspGWI ACGGA 4 cut(s) 136, 1431, 1528, 1658
TspRI CASTG 2 cut(s) 949, 1555
Vha464I CTTAAG 1 cut(s) 427
VneI GTGCAC 1 cut(s) 1671
VpaK11BI GGWCC 5 cut(s) 122, 196, 684, 1073, 1694
XapI RAATTY 2 cut(s) 958, 1144
XceI RCATGY 2 cut(s) 278, 1310
XcmI CCANNNNNNNNNTGG 1 cut(s) 1375
XmiI GTMKAC 1 cut(s) 1441
XmnI GAANNNNTTC 3 cut(s) 1146, 1572, 1575
XspI CTAG 5 cut(s) 321, 681, 810, 1518, 1839
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.