Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017465.1

Orthogroup ID

OG0010537

Physical Location & Seq

Genomic Coordinates Reverse (-)

12138 .. 13030

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017465.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgaagcccatgagtttgttggcggtgggccaattaggcaatacttaccttcttcatggagaaatgaagttaaggattagtcgacagttgagaatgcaccttacaagaagtgatccctcatcggttgagaaatggattagaatgcaagataaaatcactagtaaagatgatattgcatccgtcctcatcactgtgtgtgaagagtgcgaagaacttcttctggaagcaggcagaaagtatagactggcattatcaattgatgggaatgatgtaagagccctatataattggggtcttgcccttaccttccgtgcacagttgattgcagacattggacctggagcagcttttgatgctgatgaactgtttttggctgcaattgacaagtttgatgccatgatgtctaaaggaaatgcttatgcacccgatgctctgtttagatggggcatggcactacagcaaagatcgcgcctacggcctagcaatggtaaagagaaggtgaagttgctgcaacaagcaaagaggctgtatgaagatgcacttaatatggattcaaacaatgtccaagtaagacgagccttatcatcatgcatgtctgagcttagcagtaggcacctttacttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.56

Weight (kDa)

8.97

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04910 FvH4_3g04910 FvH4_3g04910 FvH4_3g04910
malus_domestica	MD05G1314800.v1.1 MD10G1296200.v1.1
prunus_persica	Prupe.4G044400_v2.0.a1 Prupe.4G044400_v2.0.a1
pyrus_communis	pycom05g29260 pycom10g24870
rosa_chinensis	RchiOBHm_Chr5g0008071
rosa_laevigata	RLG00000031533
rosa_multiflora	Rmu_sc0001626.1_g000002 Rmu_sc0017465.1_g000003
rosa_roxburghii	Rroxscaffold_1G00068410
rosa_rugosa	Rorug04G0433200
rosa_samantha	Rh5AG061200 Rh5BG058000 Rh5CG068100 Rh5DG057200
rosa_wichuraiana	Rw5G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	612
AccI	GTMKAC	1 cut(s)	82
AccII	CGCG	1 cut(s)	469
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	555
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	347, 601
AluI	AGCT	2 cut(s)	347, 601
Alw21I	GWGCWC	1 cut(s)	316
Alw44I	GTGCAC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	2 cut(s)	28, 476
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	3 cut(s)	344, 374, 508
Asp700I	GAANNNNTTC	2 cut(s)	213, 216
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	28, 335
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	3 cut(s)	356, 361, 495
BccI	CCATC	2 cut(s)	254, 435
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	339
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	2 cut(s)	159, 480
BfmI	CTRYAG	1 cut(s)	455
BglI	GCCNNNNNGGC	1 cut(s)	36
BisI	GCNGC	3 cut(s)	345, 375, 509
BlpI	GCTNAGC	1 cut(s)	602
BlsI	GCNGC	3 cut(s)	346, 376, 510
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	28, 335
BmiI	GGNNCC	1 cut(s)	614
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	5 cut(s)	185, 343, 382, 418, 526
BpmI	CTGGAG	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	3 cut(s)	356, 361, 495
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	2 cut(s)	30, 478
BshNI	GGYRCC	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmI	GAATGC	2 cut(s)	99, 147
BsnI	GGCC	2 cut(s)	30, 478
Bsp1286I	GDGCHC	2 cut(s)	280, 316
Bsp143I	GATC	2 cut(s)	112, 464
Bsp1720I	GCTNAGC	1 cut(s)	602
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	30, 478
BspCNI	CTCAG	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	614
BspPI	GGATC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	112, 464
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	87, 193, 318, 366
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	597, 602
BstF5I	GGATG	1 cut(s)	176
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	2 cut(s)	115, 467
BstMBI	GATC	2 cut(s)	112, 464
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 353, 428, 466, 475
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	455
BstSLI	GKGCMC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	3 cut(s)	356, 361, 495
BsuRI	GGCC	2 cut(s)	30, 478
BtsCI	GGATG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	28, 335
CviAII	CATG	6 cut(s)	10, 56, 397, 448, 588, 592
CviJI	RGCY	9 cut(s)	7, 30, 278, 347, 374, 478, 526, 578, 601
CviKI_1	RGCY	9 cut(s)	7, 30, 278, 347, 374, 478, 526, 578, 601
DdeI	CTNAG	2 cut(s)	597, 602
DpnI	GATC	2 cut(s)	114, 466
DpnII	GATC	2 cut(s)	112, 464
DraIII	CACNNNGTG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	280
FaeI	CATG	6 cut(s)	13, 59, 400, 451, 591, 595
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 525, 557
FatI	CATG	6 cut(s)	9, 55, 396, 447, 587, 591
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	3 cut(s)	345, 375, 509
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	3 cut(s)	345, 375, 509
FspBI	CTAG	2 cut(s)	159, 480
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	3 cut(s)	345, 375, 509
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	30, 478
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	6 cut(s)	13, 59, 400, 451, 591, 595
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	551
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	2 cut(s)	83, 314
Hpy188I	TCNGA	1 cut(s)	598
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	83, 314
HpyAV	CCTTC	3 cut(s)	59, 316, 490
HpyCH4III	ACNGT	4 cut(s)	87, 193, 318, 366
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 353, 428, 466, 475
HpyF3I	CTNAG	2 cut(s)	597, 602
Hsp92II	CATG	6 cut(s)	13, 59, 400, 451, 591, 595
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	112, 464
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	5 cut(s)	206, 213, 230, 324, 351
Lsp1109I	GCAGC	3 cut(s)	356, 361, 495
LweI	GCATC	5 cut(s)	185, 343, 382, 418, 526
MaeI	CTAG	2 cut(s)	159, 480
MalI	GATC	2 cut(s)	114, 466
MboI	GATC	2 cut(s)	112, 464
MboII	GAAGA	5 cut(s)	44, 209, 212, 221, 545
MfeI	CAATTG	2 cut(s)	255, 378
MhlI	GDGCHC	2 cut(s)	280, 316
MluCI	AATT	4 cut(s)	32, 255, 286, 378
MnlI	CCTC	3 cut(s)	127, 194, 516
Mph1103I	ATGCAT	1 cut(s)	593
MroXI	GAANNNNTTC	2 cut(s)	213, 216
MseI	TTAA	3 cut(s)	71, 543, 625
MslI	CAYNNNNRTG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	2 cut(s)	255, 378
Mva1269I	GAATGC	2 cut(s)	99, 147
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	5 cut(s)	36, 353, 428, 466, 475
NdeII	GATC	2 cut(s)	112, 464
NlaIII	CATG	6 cut(s)	13, 59, 400, 451, 591, 595
NlaIV	GGNNCC	1 cut(s)	614
NsiI	ATGCAT	1 cut(s)	593
NspI	RCATGY	1 cut(s)	595
PctI	GAATGC	2 cut(s)	99, 147
PdmI	GAANNNNTTC	2 cut(s)	213, 216
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	3 cut(s)	346, 376, 510
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	614
PspPI	GGNCC	2 cut(s)	28, 335
RseI	CAYNNNNRTG	1 cut(s)	191
SalI	GTCGAC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	71, 543, 625
SatI	GCNGC	3 cut(s)	345, 375, 509
Sau3AI	GATC	2 cut(s)	112, 464
Sau96I	GGNCC	2 cut(s)	28, 335
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	280, 316
SetI	ASST	8 cut(s)	51, 102, 308, 340, 349, 501, 603, 618
SfaNI	GCATC	5 cut(s)	185, 343, 382, 418, 526
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	4 cut(s)	32, 255, 286, 378
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	159, 480
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	4 cut(s)	87, 193, 318, 366
TaqI	TCGA	1 cut(s)	82
TasI	AATT	4 cut(s)	32, 255, 286, 378
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	3 cut(s)	71, 543, 625
Tru9I	TTAA	3 cut(s)	71, 543, 625
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	3 cut(s)	344, 374, 508
TspDTI	ATGAA	5 cut(s)	17, 44, 80, 375, 546
TspGWI	ACGGA	2 cut(s)	169, 299
TspRI	CASTG	1 cut(s)	196
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	335
XceI	RCATGY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	82
XmnI	GAANNNNTTC	2 cut(s)	213, 216
XspI	CTAG	2 cut(s)	159, 480
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.