Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006706

Physical Location & Seq

Genomic Coordinates Forward (+)

32076467 .. 32079106

Gene Structure 2640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCATCATCAACTCCTCAGCCAACCTTAGTGACCGGTTACCTGGTATTCCCGCTTCCGCTGGCTGTCCAAGTGGAGAGCGGGAGAGCGGGAGGAGGAGAGGGCCATAAAATCCAGTTCCATAGGATCAATTCAATATTAATTCTTGTTCATAAATCCTTAAAAACAAATCTCTACTGCCACTGCCTGTGCCTGCCTCTGTGCAGAAGTTGGCAAATTTCTGGAAAGTGGAAAGGAAGTATGGGAGATTCATTGGGTTTGATAAAAGTTACAGTCGTGCAAGGGAAAAGACTGGTAATCCGGGATTTCAAGAGCAGCGACCCTTATGTTGTTGTCAAGTTGGGCAATCAGGGGGCTAAAACCAAGGTTATCAACAGTTGCCTCAATCCAGTTTGGAATGAAGAGCTAAGCTTCTTCCTTAAGGAGCCGATTGAAGTTCTAAGTTTGGAAGTGTTCGACAAAGACTTTCTGAAGACGGATGATAAGATGGGACATGCTCACCTCAGCCTTCAGCCAATAGTCTCCGCAGCTAGATTGAGACAGATTTTGAGTGTTTCATCCGGTGAGACAACATTAAGGAAGGTTGTCCCAGATGGTGAAAATTGCCTAGTTAGGGAAAGCTCCATCGCTTGTGTAGACGGTGAGGTGGTGCAGAGTGTTTGGTTGAGGCTTTGTGACGTCGAGTCAGGGGAAATAGAACTGAAAATCAAGTTACCTAAAGCGCTCGGCTTAGGTGTAGACCTCTTAACAGTGGGGAGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0007275 GO:0008047 GO:0008150 GO:0008289 GO:0009555 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

255

Amino Acids

27.88

Weight (kDa)

8.75

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	87 - 181	5.5e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47710 AT5G47710 AT5G47710 AT5G47710
fragaria_vesca	FvH4_3g00301 FvH4_3g00301 FvH4_3g00301
malus_domestica	MD05G1361900.v1.1 MD10G1339400.v1.1
prunus_persica	Prupe.4G003500_v2.0.a1 Prupe.4G003500_v2.0.a1
pyrus_communis	pycom05g32840
rosa_chinensis	RchiOBHm_Chr5g0000471
rosa_laevigata	RLG00000030870
rosa_multiflora	Rmu_sc0003949.1_g000007
rosa_rugosa	Rorug04G0383900 Rorug04G0384000 Rorug04G0384100 Rorug04G0384200 Rorug04G0384200 Rorug04G0384200
rosa_samantha	Rh5AG003900 Rh5BG005100 Rh5CG004200 Rh5DG004100
rosa_wichuraiana	Rw5G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	681
AccBSI	CCGCTC	2 cut(s)	81, 89
AccI	GTMKAC	2 cut(s)	636, 738
AciI	CCGC	5 cut(s)	53, 59, 81, 89, 525
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	2 cut(s)	491, 494
AcyI	GRCGYC	1 cut(s)	678
AfeI	AGCGCT	1 cut(s)	723
AfiI	CCNNNNNNNGG	1 cut(s)	613
AflII	CTTAAG	1 cut(s)	419
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	135, 310, 434
AhdI	GACNNNNNGTC	1 cut(s)	682
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	4 cut(s)	406, 411, 530, 621
AluI	AGCT	4 cut(s)	406, 411, 530, 621
Alw26I	GTCTC	3 cut(s)	526, 532, 560
AlwI	GGATC	1 cut(s)	134
Aor51HI	AGCGCT	1 cut(s)	723
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	315, 527
ApoI	RAATTY	1 cut(s)	216
AseI	ATTAAT	1 cut(s)	140
AsiGI	ACCGGT	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	724
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	4 cut(s)	491, 575, 608, 653
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BbsI	GAAGAC	1 cut(s)	479
BbvCI	CCTCAGC	2 cut(s)	18, 503
BbvI	GCAGC	2 cut(s)	327, 539
BccI	CCATC	4 cut(s)	13, 481, 587, 632
BciT130I	CCWGG	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	3 cut(s)	526, 532, 560
BfaI	CTAG	2 cut(s)	531, 608
BfoI	RGCGCY	1 cut(s)	725
BfrI	CTTAAG	1 cut(s)	419
BisI	GCNGC	2 cut(s)	316, 528
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	2 cut(s)	317, 529
Bme1390I	CCNGG	2 cut(s)	44, 302
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	2 cut(s)	44, 302
BpiI	GAAGAC	1 cut(s)	479
Bpu10I	CCTNAGC	3 cut(s)	18, 503, 730
Bpu1102I	GCTNAGC	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	678
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	2 cut(s)	35, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	3 cut(s)	115, 297, 389
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	484, 557
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMII	CTCAG	2 cut(s)	32, 517
BseNI	ACTGG	3 cut(s)	115, 297, 389
BseRI	GAGGAG	3 cut(s)	6, 108, 111
BseXI	GCAGC	2 cut(s)	327, 539
BsgI	GTGCAG	2 cut(s)	223, 671
BshFI	GGCC	1 cut(s)	105
BshTI	ACCGGT	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	36, 301, 561
BslFI	GGGAC	2 cut(s)	504, 572
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmAI	GTCTC	3 cut(s)	526, 532, 560
BsmFI	GGGAC	2 cut(s)	504, 572
BsnI	GGCC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	126
Bsp1720I	GCTNAGC	1 cut(s)	407
BspACI	CCGC	5 cut(s)	53, 59, 81, 89, 525
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	31, 516
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	419
BsrBI	CCGCTC	2 cut(s)	81, 89
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	115, 297, 389
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	4 cut(s)	274, 377, 641, 751
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	678
BstAFI	CTTAAG	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	63, 194
BstDEI	CTNAG	6 cut(s)	18, 28, 407, 440, 503, 730
BstEII	GGTNACC	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	484, 557
BstH2I	RGCGCY	1 cut(s)	725
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	3 cut(s)	526, 532, 560
BstMBI	GATC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	497
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	42, 300
BstV1I	GCAGC	2 cut(s)	327, 539
BstV2I	GAAGAC	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	610
BtsCI	GGATG	2 cut(s)	484, 557
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 756
Cac8I	GCNNGC	2 cut(s)	63, 194
CfoI	GCGC	1 cut(s)	724
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	103
CsiI	ACCWGGT	1 cut(s)	42
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	1 cut(s)	494
DdeI	CTNAG	6 cut(s)	18, 28, 407, 440, 503, 730
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DriI	GACNNNNNGTC	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	396
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	363
Eco47III	AGCGCT	1 cut(s)	723
Eco57I	CTGAAG	2 cut(s)	491, 494
Eco91I	GGTNACC	1 cut(s)	38
EcoO65I	GGTNACC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	497
FaiI	YATR	7 cut(s)	108, 123, 153, 242, 327, 495, 763
FaqI	GGGAC	2 cut(s)	504, 572
FatI	CATG	1 cut(s)	493
FauI	CCCGC	3 cut(s)	60, 74, 82
FblI	GTMKAC	2 cut(s)	636, 738
Fnu4HI	GCNGC	2 cut(s)	316, 528
FokI	GGATG	2 cut(s)	491, 544
Fsp4HI	GCNGC	2 cut(s)	316, 528
FspBI	CTAG	2 cut(s)	531, 608
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	2 cut(s)	316, 528
HaeII	RGCGCY	1 cut(s)	725
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	3 cut(s)	36, 301, 561
HhaI	GCGC	1 cut(s)	724
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	1 cut(s)	497
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	2 cut(s)	248, 683
HpaII	CCGG	3 cut(s)	36, 301, 561
HphI	GGTGA	4 cut(s)	491, 575, 608, 653
Hpy166II	GTNNAC	2 cut(s)	637, 739
Hpy188I	TCNGA	1 cut(s)	471
Hpy188III	TCNNGA	2 cut(s)	222, 310
Hpy8I	GTNNAC	2 cut(s)	637, 739
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	2 cut(s)	518, 574
HpyCH4III	ACNGT	4 cut(s)	274, 377, 641, 751
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	3 cut(s)	204, 280, 652
HpyF3I	CTNAG	6 cut(s)	18, 28, 407, 440, 503, 730
HpySE526I	ACGT	1 cut(s)	678
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	1 cut(s)	497
HspAI	GCGC	1 cut(s)	722
Kzo9I	GATC	1 cut(s)	126
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	424, 626
Lsp1109I	GCAGC	2 cut(s)	327, 539
MabI	ACCWGGT	1 cut(s)	42
MaeI	CTAG	2 cut(s)	531, 608
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	5 cut(s)	31, 38, 268, 674, 711
MalI	GATC	1 cut(s)	128
MbiI	CCGCTC	2 cut(s)	81, 89
MboI	GATC	1 cut(s)	126
MboII	GAAGA	3 cut(s)	406, 413, 484
MluCI	AATT	4 cut(s)	130, 141, 216, 601
MlyI	GAGTC	1 cut(s)	692
MseI	TTAA	5 cut(s)	140, 161, 420, 575, 746
MspA1I	CMGCKG	1 cut(s)	61
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	3 cut(s)	36, 301, 561
MspR9I	CCNGG	2 cut(s)	44, 302
MvaI	CCWGG	1 cut(s)	44
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	1 cut(s)	426
NmeAIII	GCCGAG	1 cut(s)	705
NmuCI	GTSAC	2 cut(s)	31, 674
NspI	RCATGY	1 cut(s)	497
PciSI	GCTCTTC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	300
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	317, 529
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PshBI	ATTAAT	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	42
PspEI	GGTNACC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	103
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	5 cut(s)	140, 161, 420, 575, 746
SatI	GCNGC	2 cut(s)	316, 528
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	2 cut(s)	44, 302
SexAI	ACCWGGT	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	130, 141, 216, 601
SsiI	CCGC	5 cut(s)	53, 59, 81, 89, 525
SspI	AATATT	1 cut(s)	138
SspMI	CTAG	2 cut(s)	531, 608
StyD4I	CCNGG	2 cut(s)	42, 300
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	4 cut(s)	274, 377, 641, 751
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	2 cut(s)	456, 681
TasI	AATT	4 cut(s)	130, 141, 216, 601
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	5 cut(s)	140, 161, 420, 575, 746
Tru9I	TTAA	5 cut(s)	140, 161, 420, 575, 746
TscAI	CASTG	2 cut(s)	188, 756
TseFI	GTSAC	2 cut(s)	31, 674
TseI	GCWGC	2 cut(s)	315, 527
Tsp45I	GTSAC	2 cut(s)	31, 674
TspDTI	ATGAA	4 cut(s)	140, 240, 414, 546
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	188, 756
Vha464I	CTTAAG	1 cut(s)	419
VspI	ATTAAT	1 cut(s)	140
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	1 cut(s)	497
XmiI	GTMKAC	2 cut(s)	636, 738
XspI	CTAG	2 cut(s)	531, 608
ZraI	GACGTC	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.