Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009439

Physical Location & Seq

Genomic Coordinates Reverse (-)

85866 .. 87864

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAACACTGGCATACAGTGCAGCCTCAGACAACTACTTGAGTATGGATATTTTCATGCAGATCCTCATCCTGGTAATCTGTTGGCAACAACTGATGGAAAGCTTGCATTTCTTGATTTTGGAATGATGAGTGAGACGCCAGAAGAAGCTAGATTTGCTATCATCGGTCATGTTGTTCACTTGGTTAATCGGGATTATGAAGCTATGGCCCGTGACTACTATGCTCTAGATTTCTTGTCACCTGATGTAGACGTTTCTCCAATTGTACCGGCACTTCGTAACTTCTTTGATGATGTGCTTAATTTAACTGTGAGTGAACTTAATTTCAAGACACTGGTGGACGGTTTAGGTGCTGTCTTGTATCAATATCCATTCAATGTCCCAGCTTATTATGCATTGATATTAAGGTCACTTACTGTACTAGAAGGTCTAGCCCTTAATGCTGATCCTAATTTCAAGGTGCTGGCTGCTTCATACCCGTATTTCGCTAAAAGACTTCTCACGGATCCAAACCCATATCTCAGAGATGCTCTGATTGAGTTGCTTTTTAAGGATGGGAAGCTTAGGTGGAACCGACTTGAAAACCTGTTGGTTCAGGGAAGAAAAGATAAAGATTTCTCTGCAAAAGATGCTTTACAACCTGTATTGAAGTTAATATTGGGGTCAGATGGTGAAGAACTCCGAACTTTAGTTATTAAGGAGGCTGTTCGTGTCACTGAAGCTTTTGTTTGGGGTACGTTTATTGATACCTACAATTATATGCCCAATTTTATGAGAGCTGCAATTGCTAATGGCAATGCTAATGGACCACTTGTAATGAGCATTGCTGAACAAGAAAGCATGATTGAGCTCCGAGATCAAGTGCTCCGGATTTGGGGACTTCTACAGTCCTCAGAAAATTTTGATCCAGCGCTTTTGCAGCCCATTTTACAAGTCCTTCAACAACCTGAGGCACGGAACCTGGGGGGGCGTGTTGTAGGCGGAATCACCCAACGTCTTGCAGCACGGTTGCTGCAACAAGTACTTCGAGTGCCAACAACGGTTTCTGCTTTGACTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006995 GO:0006996 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009987 GO:0009991 GO:0010035 GO:0010114 GO:0010287 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031279 GO:0031647 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0036211 GO:0042221 GO:0042594 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043562 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050821 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0065009 GO:0071496 GO:0071704 GO:0071840 GO:0080177 GO:0080183 GO:0097472 GO:0140096 GO:1901564 GO:1901700 GO:1902171

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

354

Amino Acids

39.57

Weight (kDa)

5.16

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC1	PF03109	3 - 71	5.2e-18	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79600
fragaria_vesca	FvH4_5g27020 FvH4_5g27020 FvH4_5g27020 FvH4_5g27020 FvH4_5g27020 FvH4_5g27020
malus_domestica	MD00G1146800.v1.1
prunus_persica	Prupe.5G000100_v2.0.a1
pyrus_communis	pycom06g00090
rosa_chinensis	RchiOBHm_Chr7g0217991
rosa_laevigata	RLG00000002426
rosa_multiflora	Rmu_sc0000870.1_g000077 Rmu_sc0008242.1_g000006
rosa_roxburghii	Rroxscaffold_3G00241510
rosa_rugosa	Rorug07G0173000
rosa_samantha	Rh7AG315100 Rh7BG305500 Rh7CG332500 Rh7DG313500
rosa_wichuraiana	Rw7G026630 Rw7G026710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	867
AciI	CCGC	1 cut(s)	981
AclWI	GGATC	5 cut(s)	56, 440, 500, 513, 899
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	1 cut(s)	738
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	4 cut(s)	267, 420, 736, 1023
AfeI	AGCGCT	1 cut(s)	912
AfiI	CCNNNNNNNGG	2 cut(s)	71, 874
AgsI	TTSAA	6 cut(s)	328, 376, 457, 581, 649, 941
AjnI	CCWGG	2 cut(s)	70, 960
AjuI	GAANNNNNNNTTGG	4 cut(s)	641, 673, 1027, 1059
AluBI	AGCT	8 cut(s)	103, 149, 203, 386, 562, 722, 779, 850
AluI	AGCT	8 cut(s)	103, 149, 203, 386, 562, 722, 779, 850
Alw21I	GWGCWC	2 cut(s)	852, 867
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	5 cut(s)	56, 440, 500, 513, 899
Aor13HI	TCCGGA	1 cut(s)	867
Aor51HI	AGCGCT	1 cut(s)	912
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	6 cut(s)	21, 467, 779, 919, 1001, 1012
ApoI	RAATTY	1 cut(s)	898
AspLEI	GCGC	1 cut(s)	913
AspS9I	GGNCC	2 cut(s)	208, 806
AsuHPI	GGTGA	3 cut(s)	231, 683, 979
AvaII	GGWCC	1 cut(s)	806
AxyI	CCTNAGG	1 cut(s)	948
BamHI	GGATCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	852
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
Bbv12I	GWGCWC	2 cut(s)	852, 867
BbvI	GCAGC	6 cut(s)	33, 454, 766, 931, 999, 1013
BccI	CCATC	3 cut(s)	89, 548, 662
BciT130I	CCWGG	2 cut(s)	72, 962
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	4 cut(s)	150, 227, 422, 431
BfmI	CTRYAG	1 cut(s)	884
BfoI	RGCGCY	1 cut(s)	914
BisI	GCNGC	6 cut(s)	22, 468, 780, 920, 1002, 1013
BlsI	GCNGC	6 cut(s)	23, 469, 781, 921, 1003, 1014
BmcAI	AGTACT	1 cut(s)	1023
Bme1390I	CCNGG	2 cut(s)	72, 962
Bme18I	GGWCC	1 cut(s)	806
BmgT120I	GGNCC	2 cut(s)	208, 806
BmiI	GGNNCC	3 cut(s)	507, 572, 959
BmrFI	CCNGG	2 cut(s)	72, 962
BmsI	GCATC	2 cut(s)	517, 619
Bpu10I	CCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	961
BsaWI	WCCGGW	1 cut(s)	867
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 874
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	13, 339
Bse21I	CCTNAGG	1 cut(s)	948
Bse3DI	GCAATG	2 cut(s)	802, 822
Bse8I	GATNNNNATC	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	867
BseBI	CCWGG	2 cut(s)	72, 962
BseDI	CCNNGG	1 cut(s)	961
BseGI	GGATG	2 cut(s)	67, 559
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	71, 874
BseMI	GCAATG	2 cut(s)	802, 822
BseMII	CTCAG	4 cut(s)	40, 535, 906, 939
BseNI	ACTGG	2 cut(s)	13, 339
BseXI	GCAGC	6 cut(s)	33, 454, 766, 931, 999, 1013
BseYI	CCCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	852, 867
BsiSI	CCGG	2 cut(s)	269, 868
BslFI	GGGAC	2 cut(s)	365, 891
BslI	CCNNNNNNNGG	2 cut(s)	71, 874
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	365, 891
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	852, 867
Bsp13I	TCCGGA	1 cut(s)	867
Bsp143I	GATC	5 cut(s)	61, 445, 505, 856, 904
BspACI	CCGC	1 cut(s)	981
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	4 cut(s)	39, 534, 905, 940
BspEI	TCCGGA	1 cut(s)	867
BspLI	GGNNCC	3 cut(s)	507, 572, 959
BspPI	GGATC	5 cut(s)	56, 440, 500, 513, 899
BsrDI	GCAATG	2 cut(s)	802, 822
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	13, 339
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	961
BssMI	GATC	5 cut(s)	61, 445, 505, 856, 904
BssNI	GRCGYC	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	72, 962
Bst4CI	ACNGT	7 cut(s)	18, 310, 344, 418, 888, 1008, 1042
BstACI	GRCGYC	1 cut(s)	137
BstAPI	GCANNNNNTGC	2 cut(s)	18, 629
BstC8I	GCNNGC	2 cut(s)	105, 465
BstDEI	CTNAG	5 cut(s)	26, 521, 563, 892, 948
BstF5I	GGATG	2 cut(s)	67, 559
BstH2I	RGCGCY	1 cut(s)	914
BstHHI	GCGC	1 cut(s)	913
BstKTI	GATC	5 cut(s)	64, 448, 508, 859, 907
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	5 cut(s)	61, 445, 505, 856, 904
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 155, 392, 440, 629, 785, 919
BstNI	CCWGG	2 cut(s)	72, 962
BstSCI	CCNGG	2 cut(s)	70, 960
BstSFI	CTRYAG	1 cut(s)	884
BstV1I	GCAGC	6 cut(s)	33, 454, 766, 931, 999, 1013
BstX2I	RGATCY	2 cut(s)	61, 505
BstYI	RGATCY	2 cut(s)	61, 505
Bsu36I	CCTNAGG	1 cut(s)	948
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	67, 559
BtsIMutI	CAGTG	4 cut(s)	6, 23, 332, 714
Cac8I	GCNNGC	2 cut(s)	105, 465
CfoI	GCGC	1 cut(s)	913
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	208, 806
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	4 cut(s)	266, 419, 735, 1022
CviAII	CATG	3 cut(s)	56, 170, 841
CviQI	GTAC	4 cut(s)	266, 419, 735, 1022
DdeI	CTNAG	5 cut(s)	26, 521, 563, 892, 948
DpnI	GATC	5 cut(s)	63, 447, 507, 858, 906
DpnII	GATC	5 cut(s)	61, 445, 505, 856, 904
EciI	GGCGGA	1 cut(s)	996
Ecl136II	GAGCTC	1 cut(s)	850
Eco24I	GRGCYC	1 cut(s)	852
Eco47I	GGWCC	1 cut(s)	806
Eco47III	AGCGCT	1 cut(s)	912
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	1 cut(s)	738
Eco81I	CCTNAGG	1 cut(s)	948
EcoICRI	GAGCTC	1 cut(s)	850
EcoRII	CCWGG	2 cut(s)	70, 960
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	852
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	3 cut(s)	59, 173, 844
FaqI	GGGAC	2 cut(s)	365, 891
FatI	CATG	3 cut(s)	55, 169, 840
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	22, 468, 780, 920, 1002, 1013
FokI	GGATG	2 cut(s)	54, 566
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	6 cut(s)	22, 468, 780, 920, 1002, 1013
FspBI	CTAG	4 cut(s)	150, 227, 422, 431
GlaI	GCGC	1 cut(s)	912
GluI	GCNGC	6 cut(s)	22, 468, 780, 920, 1002, 1013
GsaI	CCCAGC	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	914
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	2 cut(s)	269, 868
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	913
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	59, 173, 844
Hin6I	GCGC	1 cut(s)	911
HinP1I	GCGC	1 cut(s)	911
HindIII	AAGCTT	3 cut(s)	101, 560, 720
HinfI	GANTC	1 cut(s)	984
HpaII	CCGG	2 cut(s)	269, 868
HphI	GGTGA	3 cut(s)	231, 683, 979
Hpy166II	GTNNAC	4 cut(s)	178, 250, 317, 340
Hpy188I	TCNGA	7 cut(s)	29, 524, 534, 667, 683, 854, 895
Hpy188III	TCNNGA	5 cut(s)	113, 191, 227, 328, 868
Hpy8I	GTNNAC	4 cut(s)	178, 250, 317, 340
HpyAV	CCTTC	2 cut(s)	419, 947
HpyCH4III	ACNGT	7 cut(s)	18, 310, 344, 418, 888, 1008, 1042
HpyCH4IV	ACGT	3 cut(s)	252, 737, 994
HpyCH4V	TGCA	9 cut(s)	21, 59, 107, 395, 623, 782, 919, 1001, 1015
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 155, 392, 440, 629, 785, 919
HpyF3I	CTNAG	5 cut(s)	26, 521, 563, 892, 948
HpySE526I	ACGT	3 cut(s)	252, 737, 994
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	59, 173, 844
HspAI	GCGC	1 cut(s)	911
Kpn2I	TCCGGA	1 cut(s)	867
Kzo9I	GATC	5 cut(s)	61, 445, 505, 856, 904
LmnI	GCTCC	2 cut(s)	855, 870
Lsp1109I	GCAGC	6 cut(s)	33, 454, 766, 931, 999, 1013
LweI	GCATC	2 cut(s)	517, 619
MaeI	CTAG	4 cut(s)	150, 227, 422, 431
MaeII	ACGT	3 cut(s)	252, 737, 994
MaeIII	GTNAC	5 cut(s)	212, 237, 278, 408, 712
MalI	GATC	5 cut(s)	63, 447, 507, 858, 906
MboI	GATC	5 cut(s)	61, 445, 505, 856, 904
MboII	GAAGA	3 cut(s)	155, 612, 686
MfeI	CAATTG	2 cut(s)	261, 783
MflI	RGATCY	2 cut(s)	61, 505
MhlI	GDGCHC	2 cut(s)	852, 867
MluCI	AATT	8 cut(s)	261, 301, 322, 451, 754, 766, 783, 898
MnlI	CCTC	5 cut(s)	35, 75, 694, 901, 943
Mph1103I	ATGCAT	1 cut(s)	397
MroI	TCCGGA	1 cut(s)	867
MseI	TTAA	9 cut(s)	186, 300, 305, 321, 404, 438, 549, 653, 696
MspI	CCGG	2 cut(s)	269, 868
MspR9I	CCNGG	2 cut(s)	72, 962
MunI	CAATTG	2 cut(s)	261, 783
MvaI	CCWGG	2 cut(s)	72, 962
MwoI	GCNNNNNNNGC	7 cut(s)	18, 155, 392, 440, 629, 785, 919
NdeII	GATC	5 cut(s)	61, 445, 505, 856, 904
NlaIII	CATG	3 cut(s)	59, 173, 844
NlaIV	GGNNCC	3 cut(s)	507, 572, 959
NmuCI	GTSAC	4 cut(s)	212, 237, 408, 712
NsiI	ATGCAT	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	984
PkrI	GCNGC	6 cut(s)	23, 469, 781, 921, 1003, 1014
Psp124BI	GAGCTC	1 cut(s)	852
Psp6I	CCWGG	2 cut(s)	70, 960
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	2 cut(s)	70, 960
PspN4I	GGNNCC	3 cut(s)	507, 572, 959
PspPI	GGNCC	2 cut(s)	208, 806
PsuI	RGATCY	2 cut(s)	61, 505
RsaI	GTAC	4 cut(s)	267, 420, 736, 1023
RsaNI	GTAC	4 cut(s)	266, 419, 735, 1022
SacI	GAGCTC	1 cut(s)	852
SaqAI	TTAA	9 cut(s)	186, 300, 305, 321, 404, 438, 549, 653, 696
SatI	GCNGC	6 cut(s)	22, 468, 780, 920, 1002, 1013
Sau3AI	GATC	5 cut(s)	61, 445, 505, 856, 904
Sau96I	GGNCC	2 cut(s)	208, 806
ScaI	AGTACT	1 cut(s)	1023
ScrFI	CCNGG	2 cut(s)	72, 962
SduI	GDGCHC	2 cut(s)	852, 867
SfaNI	GCATC	2 cut(s)	517, 619
SfcI	CTRYAG	1 cut(s)	884
SinI	GGWCC	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	8 cut(s)	261, 301, 322, 451, 754, 766, 783, 898
SsiI	CCGC	1 cut(s)	981
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	4 cut(s)	150, 227, 422, 431
SstI	GAGCTC	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	70, 960
TaaI	ACNGT	7 cut(s)	18, 310, 344, 418, 888, 1008, 1042
TaiI	ACGT	3 cut(s)	255, 740, 997
TaqI	TCGA	1 cut(s)	1027
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	8 cut(s)	261, 301, 322, 451, 754, 766, 783, 898
TatI	WGTACW	2 cut(s)	418, 1021
TfiI	GAWTC	1 cut(s)	984
Tru1I	TTAA	9 cut(s)	186, 300, 305, 321, 404, 438, 549, 653, 696
Tru9I	TTAA	9 cut(s)	186, 300, 305, 321, 404, 438, 549, 653, 696
TscAI	CASTG	4 cut(s)	13, 23, 339, 721
TseFI	GTSAC	4 cut(s)	212, 237, 408, 712
TseI	GCWGC	6 cut(s)	21, 467, 779, 919, 1001, 1012
Tsp45I	GTSAC	4 cut(s)	212, 237, 408, 712
TspDTI	ATGAA	4 cut(s)	17, 44, 213, 462
TspGWI	ACGGA	2 cut(s)	518, 970
TspRI	CASTG	4 cut(s)	13, 23, 339, 721
VpaK11BI	GGWCC	1 cut(s)	806
XapI	RAATTY	1 cut(s)	898
XbaI	TCTAGA	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	4 cut(s)	150, 227, 422, 431
ZrmI	AGTACT	1 cut(s)	1023
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.