Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011697

Physical Location & Seq

Genomic Coordinates Reverse (-)

9062196 .. 9064449

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g05920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCCTTCCCTGAGCTTTTTGACTGTGCTTCTCATCCACATTGGCTTGTTTGTGAGCTTTTCTTCTGCTGAGGATCCAAATATTTTCTATAACTTTGAGGTCTCATATATTACTGCTTCTCCTCTCGGTGTCCCTCAACAGGTTATTGCCATTAATGGCAAGTTCCCAGGTCCAACTATTAATGTGACAACTAACAACAATGTCATTGTCAATGTTCGGAACAAATTGGACGAGAATCTCCTCATGACCTGGGCCGGAATTCAGCAACGGCATAGTTCATGGCAAGATGGGGTTCTCGGAACCAACTGTCCAATTCTGCCAAAGTGGAATTGGACTTATAATTTTCAGGTTAAGGATCAGGTTGGGAGCTTCTTTTACTTCCCGTCCCTTAATATGCAGAGAGCGTCTGGAGGATTTGGCGGATTTATTATTAATAACCGGGCTGTAATTCCAATTCCTTTTGCAAACCCGGATGGGGATATTACTATCTTGATTGGTGACTGGTACACAAAGAACCATACGGCTTTGAGGAAGATGCTTGATGAGGGGAAAGACCTTGGGATGCCCGATGGCGTTCTTATCAATGGGAAAGGGCCTTACCAGTACAACACTACACTTGTTCCTGATGGCATTGAATATGAAACACTTGAAGTACATCCAGGGAAAACTTACCGTCTTCGCATACACAATGTTGGGATCTCAACTACTCTAAATTTCAGGATCCAGAACCATAATCTGCTTCTAGCAGAGTCAGAGGGCTCATATACAGTGCAACAGAATTATACAAGCTTAGACATACACGTTGGACAATCTTATTCTTTTCTAGTAACCATGGATCAGAATGCAAGTTCTGATTATTACATTGTAGCGAGTGCTAGATTTGTCAATGAGTCAAATTGGAAAAGAGTAACTGGAGTTGGGATCCTGCACTATACTAATTCCAAAGGAAAGGCAGCTGGCCCCCTTCCAGTGGGACCACAAGATGAATTTGATAAAACATACTCAATGAACCAGGCAACTGATCGATCTATCAGATGGAATGTATCAGCTAGTGGTGCACGTCCTAATCCACAGGGGTCTTTCAGATATGGATCAATCAATGTAACTGATGTTTATGTGTTGAAAAATAAGCCACCTTTGATCGATCAATGGGAAACGGCGAGCAACACTCAGTGGAATCTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

396

Amino Acids

44.13

Weight (kDa)

6.45

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12420 AT4G12420
fragaria_vesca	FvH4_5g00300
malus_domestica	MD04G1083900.v1.1 MD06G1066000.v1.1
prunus_persica	Prupe.5G075700_v2.0.a1
pyrus_communis	pycom04g07510 pycom06g05920
rosa_chinensis	RchiOBHm_Chr7g0202271
rosa_laevigata	RLG00000003613
rosa_multiflora	Rmu_co8242337.1_g000001 Rmu_sc0001394.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254690
rosa_rugosa	Rorug07G0069700
rosa_samantha	Rh7AG196800 Rh7BG198000 Rh7CG208000 Rh7DG203400
rosa_wichuraiana	Rw7G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AciI	CCGC	1 cut(s)	420
AcsI	RAATTY	3 cut(s)	258, 712, 986
AdeI	CACNNNGTG	1 cut(s)	1173
AfaI	GTAC	3 cut(s)	506, 605, 654
AfiI	CCNNNNNNNGG	3 cut(s)	139, 475, 970
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	3 cut(s)	635, 650, 1123
AjiI	CACGTC	1 cut(s)	1061
AjnI	CCWGG	4 cut(s)	166, 248, 658, 1011
AloI	GAACNNNNNNTCC	2 cut(s)	292, 324
AluBI	AGCT	6 cut(s)	15, 57, 369, 789, 956, 1049
AluI	AGCT	6 cut(s)	15, 57, 369, 789, 956, 1049
Alw21I	GWGCWC	1 cut(s)	1060
Alw26I	GTCTC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	1056
AoxI	GGCC	3 cut(s)	252, 593, 958
ApaLI	GTGCAC	1 cut(s)	1056
ApeKI	GCWGC	1 cut(s)	953
ApoI	RAATTY	3 cut(s)	258, 712, 986
AseI	ATTAAT	3 cut(s)	153, 180, 432
AspS9I	GGNCC	5 cut(s)	170, 252, 593, 959, 974
AsuC2I	CCSGG	2 cut(s)	440, 470
AsuHPI	GGTGA	1 cut(s)	509
AvaII	GGWCC	2 cut(s)	170, 974
BaeGI	GKGCMC	1 cut(s)	1060
BamHI	GGATCC	3 cut(s)	73, 720, 921
BanII	GRGCYC	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	1060
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	965
BccI	CCATC	5 cut(s)	281, 467, 563, 620, 1029
BceAI	ACGGC	3 cut(s)	284, 537, 1173
BciT130I	CCWGG	4 cut(s)	168, 250, 660, 1013
BcnI	CCSGG	2 cut(s)	440, 470
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	4 cut(s)	743, 824, 876, 1050
BisI	GCNGC	1 cut(s)	954
BlsI	GCNGC	1 cut(s)	955
Bme1390I	CCNGG	6 cut(s)	168, 250, 440, 470, 660, 1013
Bme18I	GGWCC	2 cut(s)	170, 974
BmgBI	CACGTC	1 cut(s)	1061
BmgT120I	GGNCC	5 cut(s)	170, 252, 593, 959, 974
BmiI	GGNNCC	6 cut(s)	75, 301, 722, 923, 961, 975
BmrFI	CCNGG	6 cut(s)	168, 250, 440, 470, 660, 1013
BmsI	GCATC	2 cut(s)	525, 552
BpiI	GAAGAC	1 cut(s)	668
BplI	GAGNNNNNCTC	2 cut(s)	1153, 1185
BpmI	CTGGAG	2 cut(s)	429, 933
Bpu10I	CCTNAGC	2 cut(s)	11, 69
BpuMI	CCSGG	2 cut(s)	440, 470
Bsa29I	ATCGAT	2 cut(s)	1024, 1143
BsaBI	GATNNNNATC	1 cut(s)	1090
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	5 cut(s)	166, 249, 556, 659, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 475, 970
Bse1I	ACTGG	4 cut(s)	506, 601, 916, 968
Bse8I	GATNNNNATC	1 cut(s)	1090
BseBI	CCWGG	4 cut(s)	168, 250, 660, 1013
BseCI	ATCGAT	2 cut(s)	1024, 1143
BseDI	CCNNGG	5 cut(s)	166, 249, 556, 659, 831
BseGI	GGATG	4 cut(s)	33, 478, 567, 655
BseJI	GATNNNNATC	1 cut(s)	1090
BseLI	CCNNNNNNNGG	3 cut(s)	139, 475, 970
BseMII	CTCAG	2 cut(s)	60, 1184
BseNI	ACTGG	4 cut(s)	506, 601, 916, 968
BseRI	GAGGAG	2 cut(s)	111, 230
BseSI	GKGCMC	1 cut(s)	1060
BseXI	GCAGC	1 cut(s)	965
BsgI	GTGCAG	1 cut(s)	911
BshFI	GGCC	3 cut(s)	254, 595, 960
BshVI	ATCGAT	2 cut(s)	1024, 1143
BsiHKAI	GWGCWC	1 cut(s)	1060
BsiSI	CCGG	3 cut(s)	255, 439, 470
BslFI	GGGAC	3 cut(s)	116, 370, 987
BslI	CCNNNNNNNGG	3 cut(s)	139, 475, 970
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	3 cut(s)	116, 370, 987
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	3 cut(s)	254, 595, 960
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	761, 1060
Bsp19I	CCATGG	1 cut(s)	831
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	3 cut(s)	254, 595, 960
BspCNI	CTCAG	2 cut(s)	61, 1183
BspDI	ATCGAT	2 cut(s)	1024, 1143
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	6 cut(s)	75, 301, 722, 923, 961, 975
BspTNI	GGTCTC	1 cut(s)	106
BsrI	ACTGG	4 cut(s)	506, 601, 916, 968
BssECI	CCNNGG	5 cut(s)	166, 249, 556, 659, 831
BssT1I	CCWWGG	2 cut(s)	556, 831
Bst2UI	CCWGG	4 cut(s)	168, 250, 660, 1013
Bst4CI	ACNGT	4 cut(s)	25, 308, 674, 769
BstC8I	GCNNGC	2 cut(s)	958, 1162
BstDEI	CTNAG	4 cut(s)	11, 69, 790, 1170
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	4 cut(s)	33, 478, 567, 655
BstMAI	GTCTC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	1055
BstNI	CCWGG	4 cut(s)	168, 250, 660, 1013
BstSCI	CCNGG	6 cut(s)	166, 248, 438, 468, 658, 1011
BstSLI	GKGCMC	1 cut(s)	1060
BstV1I	GCAGC	1 cut(s)	965
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	4 cut(s)	73, 696, 720, 921
BstYI	RGATCY	4 cut(s)	73, 696, 720, 921
Bsu15I	ATCGAT	2 cut(s)	1024, 1143
BsuRI	GGCC	3 cut(s)	254, 595, 960
BsuTUI	ATCGAT	2 cut(s)	1024, 1143
BtgI	CCRYGG	1 cut(s)	831
BtrI	CACGTC	1 cut(s)	1061
BtsCI	GGATG	4 cut(s)	33, 478, 567, 655
BtsIMutI	CAGTG	3 cut(s)	774, 975, 1178
Cac8I	GCNNGC	2 cut(s)	958, 1162
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	5 cut(s)	170, 252, 593, 959, 974
ClaI	ATCGAT	2 cut(s)	1024, 1143
CseI	GACGC	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	505, 604, 653
CviAII	CATG	3 cut(s)	244, 279, 832
CviQI	GTAC	3 cut(s)	505, 604, 653
DdeI	CTNAG	4 cut(s)	11, 69, 790, 1170
DraIII	CACNNNGTG	1 cut(s)	1173
EciI	GGCGGA	1 cut(s)	435
Eco130I	CCWWGG	2 cut(s)	556, 831
Eco24I	GRGCYC	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	170, 974
EcoO109I	RGGNCCY	1 cut(s)	593
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	4 cut(s)	166, 248, 658, 1011
EcoT14I	CCWWGG	2 cut(s)	556, 831
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	2 cut(s)	556, 831
FaeI	CATG	3 cut(s)	247, 282, 835
FaqI	GGGAC	3 cut(s)	116, 370, 987
FatI	CATG	3 cut(s)	243, 278, 831
Fnu4HI	GCNGC	1 cut(s)	954
FokI	GGATG	4 cut(s)	20, 485, 574, 642
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	1 cut(s)	954
FspBI	CTAG	4 cut(s)	743, 824, 876, 1050
GluI	GCNGC	1 cut(s)	954
GsuI	CTGGAG	2 cut(s)	429, 933
HaeIII	GGCC	3 cut(s)	254, 595, 960
HapII	CCGG	3 cut(s)	255, 439, 470
HgaI	GACGC	1 cut(s)	393
Hin1II	CATG	3 cut(s)	247, 282, 835
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	4 cut(s)	235, 749, 890, 1177
HpaII	CCGG	3 cut(s)	255, 439, 470
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	2 cut(s)	507, 1058
Hpy188I	TCNGA	7 cut(s)	219, 299, 754, 840, 853, 1034, 1085
Hpy188III	TCNNGA	6 cut(s)	244, 408, 490, 623, 718, 724
Hpy8I	GTNNAC	2 cut(s)	507, 1058
HpyAV	CCTTC	2 cut(s)	15, 974
HpyCH4III	ACNGT	4 cut(s)	25, 308, 674, 769
HpyCH4IV	ACGT	2 cut(s)	801, 1060
HpyCH4V	TGCA	6 cut(s)	397, 464, 772, 845, 928, 1058
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1055
HpyF3I	CTNAG	4 cut(s)	11, 69, 790, 1170
HpySE526I	ACGT	2 cut(s)	801, 1060
Hsp92II	CATG	3 cut(s)	247, 282, 835
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	1 cut(s)	965
LweI	GCATC	2 cut(s)	525, 552
MaeI	CTAG	4 cut(s)	743, 824, 876, 1050
MaeII	ACGT	2 cut(s)	801, 1060
MaeIII	GTNAC	5 cut(s)	184, 497, 826, 907, 1102
MboII	GAAGA	3 cut(s)	54, 544, 668
MflI	RGATCY	4 cut(s)	73, 696, 720, 921
MhlI	GDGCHC	2 cut(s)	761, 1060
MlyI	GAGTC	2 cut(s)	758, 899
MmeI	TCCRAC	2 cut(s)	197, 784
MnlI	CCTC	9 cut(s)	64, 91, 132, 144, 251, 404, 522, 538, 748
MseI	TTAA	6 cut(s)	153, 180, 351, 390, 432, 1186
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	3 cut(s)	255, 439, 470
MspR9I	CCNGG	6 cut(s)	168, 250, 440, 470, 660, 1013
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	4 cut(s)	168, 250, 660, 1013
MwoI	GCNNNNNNNGC	1 cut(s)	1055
NciI	CCSGG	2 cut(s)	440, 470
NcoI	CCATGG	1 cut(s)	831
NlaIII	CATG	3 cut(s)	247, 282, 835
NlaIV	GGNNCC	6 cut(s)	75, 301, 722, 923, 961, 975
NmuCI	GTSAC	2 cut(s)	184, 497
PagI	TCATGA	1 cut(s)	243
PctI	GAATGC	1 cut(s)	847
PfeI	GAWTC	2 cut(s)	235, 1177
PkrI	GCNGC	1 cut(s)	955
PleI	GAGTC	2 cut(s)	757, 898
PpsI	GAGTC	2 cut(s)	757, 898
PshBI	ATTAAT	3 cut(s)	153, 180, 432
PsiI	TTATAA	1 cut(s)	339
Psp6I	CCWGG	4 cut(s)	166, 248, 658, 1011
PspGI	CCWGG	4 cut(s)	166, 248, 658, 1011
PspN4I	GGNNCC	6 cut(s)	75, 301, 722, 923, 961, 975
PspPI	GGNCC	5 cut(s)	170, 252, 593, 959, 974
PsuI	RGATCY	4 cut(s)	73, 696, 720, 921
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	3 cut(s)	506, 605, 654
RsaNI	GTAC	3 cut(s)	505, 604, 653
SaqAI	TTAA	6 cut(s)	153, 180, 351, 390, 432, 1186
SatI	GCNGC	1 cut(s)	954
Sau96I	GGNCC	5 cut(s)	170, 252, 593, 959, 974
SchI	GAGTC	2 cut(s)	758, 899
ScrFI	CCNGG	6 cut(s)	168, 250, 440, 470, 660, 1013
SduI	GDGCHC	2 cut(s)	761, 1060
SfaNI	GCATC	2 cut(s)	525, 552
SinI	GGWCC	2 cut(s)	170, 974
SsiI	CCGC	1 cut(s)	420
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	4 cut(s)	743, 824, 876, 1050
StyD4I	CCNGG	6 cut(s)	166, 248, 438, 468, 658, 1011
StyI	CCWWGG	2 cut(s)	556, 831
TaaI	ACNGT	4 cut(s)	25, 308, 674, 769
TaiI	ACGT	2 cut(s)	804, 1063
TaqI	TCGA	2 cut(s)	1024, 1143
TatI	WGTACW	2 cut(s)	603, 652
TfiI	GAWTC	2 cut(s)	235, 1177
Tru1I	TTAA	6 cut(s)	153, 180, 351, 390, 432, 1186
Tru9I	TTAA	6 cut(s)	153, 180, 351, 390, 432, 1186
TscAI	CASTG	3 cut(s)	774, 975, 1178
TseFI	GTSAC	2 cut(s)	184, 497
TseI	GCWGC	1 cut(s)	953
Tsp45I	GTSAC	2 cut(s)	184, 497
TspDTI	ATGAA	4 cut(s)	267, 654, 999, 1022
TspRI	CASTG	3 cut(s)	774, 975, 1178
VneI	GTGCAC	1 cut(s)	1056
VpaK11BI	GGWCC	2 cut(s)	170, 974
VspI	ATTAAT	3 cut(s)	153, 180, 432
XapI	RAATTY	3 cut(s)	258, 712, 986
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327
XspI	CTAG	4 cut(s)	743, 824, 876, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.