Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8242337.1

Orthogroup ID

OG0011697

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 741

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8242337.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 407 bp

atggctttcaagagctttttcactctgtttctcatccacatttgcttgtttgcgagcttgagttacgctgaagatccaagcttttaccacgaatttgaggtctcttacatcactgcctctcctcttggtgttcctcaacaggttattgccattaatggaaagtttccgggtcctgttattaatgtgactactaacaacaatgtcattgtcaatgttcggaacaaattggatgagaatctactctttacttgggctggaattcagcagcggcggagttcgtggcaagatggagttcttggaaccaattgtccaattcccccaaagtggaattggacttacaattttcaggttaaggatcagattgggagcttcttttacttcccatctcttaatctccagagagcatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

136

Amino Acids

15.54

Weight (kDa)

7.78

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12420 AT4G12420
fragaria_vesca	FvH4_5g00300
malus_domestica	MD04G1083900.v1.1 MD06G1066000.v1.1
prunus_persica	Prupe.5G075700_v2.0.a1
pyrus_communis	pycom04g07510 pycom06g05920
rosa_chinensis	RchiOBHm_Chr7g0202271
rosa_laevigata	RLG00000003613
rosa_multiflora	Rmu_co8242337.1_g000001 Rmu_sc0001394.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254690
rosa_rugosa	Rorug07G0069700
rosa_samantha	Rh7AG196800 Rh7BG198000 Rh7CG208000 Rh7DG203400
rosa_wichuraiana	Rw7G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	268, 271
AclWI	GGATC	2 cut(s)	68, 363
AcsI	RAATTY	2 cut(s)	92, 258
AcuI	CTGAAG	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	10
AloI	GAACNNNNNNTCC	2 cut(s)	292, 324
AluBI	AGCT	4 cut(s)	15, 57, 81, 369
AluI	AGCT	4 cut(s)	15, 57, 81, 369
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	68, 363
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	92, 258
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AseI	ATTAAT	2 cut(s)	153, 180
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	281, 391
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	266, 269
BlsI	GCNGC	2 cut(s)	267, 270
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	171, 301
BmrFI	CCNGG	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	234
BseGI	GGATG	2 cut(s)	33, 235
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	73, 355
BspACI	CCGC	2 cut(s)	268, 271
BspLI	GGNNCC	2 cut(s)	171, 301
BspPI	GGATC	2 cut(s)	68, 363
BspTNI	GGTCTC	1 cut(s)	106
BssMI	GATC	2 cut(s)	73, 355
BstC8I	GCNNGC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	33, 235
BstKTI	GATC	2 cut(s)	76, 358
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	73, 355
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	33, 235
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	170
CviJI	RGCY	6 cut(s)	5, 15, 57, 81, 254, 369
CviKI_1	RGCY	6 cut(s)	5, 15, 57, 81, 254, 369
DpnI	GATC	2 cut(s)	75, 357
DpnII	GATC	2 cut(s)	73, 355
EciI	GGCGGA	1 cut(s)	286
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	266, 269
FokI	GGATG	2 cut(s)	20, 242
Fsp4HI	GCNGC	2 cut(s)	266, 269
GluI	GCNGC	2 cut(s)	266, 269
GsuI	CTGGAG	1 cut(s)	380
HapII	CCGG	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	219, 360
Hpy188III	TCNNGA	2 cut(s)	10, 397
Kzo9I	GATC	2 cut(s)	73, 355
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	5 cut(s)	125, 180, 186, 240, 332
Lsp1109I	GCAGC	1 cut(s)	277
MaeIII	GTNAC	2 cut(s)	62, 184
MalI	GATC	2 cut(s)	75, 357
MboI	GATC	2 cut(s)	73, 355
MboII	GAAGA	1 cut(s)	83
MfeI	CAATTG	1 cut(s)	304
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	7 cut(s)	92, 224, 258, 304, 312, 328, 340
MnlI	CCTC	4 cut(s)	91, 127, 132, 144
MseI	TTAA	4 cut(s)	153, 180, 351, 390
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	304
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	2 cut(s)	73, 355
NlaIV	GGNNCC	2 cut(s)	171, 301
NmuCI	GTSAC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	267, 270
PpuMI	RGGWCCY	1 cut(s)	170
PshBI	ATTAAT	2 cut(s)	153, 180
Psp5II	RGGWCCY	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	171, 301
PspPI	GGNCC	1 cut(s)	170
PspPPI	RGGWCCY	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	73
SaqAI	TTAA	4 cut(s)	153, 180, 351, 390
SatI	GCNGC	2 cut(s)	266, 269
Sau3AI	GATC	2 cut(s)	73, 355
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	7 cut(s)	17, 59, 83, 102, 144, 351, 371
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	7 cut(s)	92, 224, 258, 304, 312, 328, 340
SsiI	CCGC	2 cut(s)	268, 271
StyD4I	CCNGG	1 cut(s)	166
TasI	AATT	7 cut(s)	92, 224, 258, 304, 312, 328, 340
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	4 cut(s)	153, 180, 351, 390
Tru9I	TTAA	4 cut(s)	153, 180, 351, 390
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	184
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	170
VspI	ATTAAT	2 cut(s)	153, 180
XapI	RAATTY	2 cut(s)	92, 258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.