Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011697

Physical Location & Seq

Genomic Coordinates Reverse (-)

18611484 .. 18614111

Gene Structure 2628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG208000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTTTCAAGAGCTTTTTCACTCTGTTTCTCATCCACATTTGCTTATTTGCGAGCTTGAGTTACGCTGAAGATCCAAGCTTTTACCACGAATTTGAGGTCTCTTACATCACTGCCTCTCCTCTTGGTGTTCCTCAACAGGCTTTGAGGAAGACCCTTGATGCAGGGAAAGGCCTTGGCATACCAGATGGTGTTCTCATCAATGGGAAAGGCCCTTACCAATACAACACTACACTTGTCCCGGATGGCATTGATTACGAAACAATTGATGTACACCCAGCCAGTGGTGCACGTCCTAATCCACAGGGATCTTTTAGATATGGCTCCATCAATGTAACTGATGTTTATGTGTTGAAAAACAAGCCACCAGTAATGATCAATGGGAAACGCCGAGCAACACTAAGTGGAAACTCATTTGTAAATCCTGCCACACCAATCCGGCTAGCTGACCAGTACAAATTGAAGGGTGTTTATAAGCTTGACTTCCCAAAAAGGCCACTTACTGGAGCACCCAGGATGGAGACATCTGTGATTAATGGAACATTTAGAGGATTTATTGAAATCATACTTCAGAACAATGACACCAAGATGCAGAGTTACCACGTGGATGGATATGCATTTTTTGTTGTTGGGTGGGAATTCCTTGATATTGCATCGAATATGTTTGTGAAGTATTTTCTATACCTCTCAGTGCCTTTAACATGCAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

237

Amino Acids

26.46

Weight (kDa)

8.4

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_2	PF07731	144 - 214	2.5e-08	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011697)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12420 AT4G12420
fragaria_vesca	FvH4_5g00300
malus_domestica	MD04G1083900.v1.1 MD06G1066000.v1.1
prunus_persica	Prupe.5G075700_v2.0.a1
pyrus_communis	pycom04g07510 pycom06g05920
rosa_chinensis	RchiOBHm_Chr7g0202271
rosa_laevigata	RLG00000003613
rosa_multiflora	Rmu_co8242337.1_g000001 Rmu_sc0001394.1_g000006
rosa_roxburghii	Rroxscaffold_3G00254690
rosa_rugosa	Rorug07G0069700
rosa_samantha	Rh7AG196800 Rh7BG198000 Rh7CG208000 Rh7DG203400
rosa_wichuraiana	Rw7G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AccB7I	CCANNNNNTGG	2 cut(s)	284, 503
AclWI	GGATC	2 cut(s)	68, 316
AcsI	RAATTY	2 cut(s)	92, 638
AcuI	CTGAAG	2 cut(s)	90, 554
AcvI	CACGTG	1 cut(s)	604
AdeI	CACNNNGTG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	273, 455
AfiI	CCNNNNNNNGG	2 cut(s)	284, 503
AgsI	TTSAA	4 cut(s)	10, 355, 463, 560
AjiI	CACGTC	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	5 cut(s)	15, 57, 81, 446, 478
AluI	AGCT	5 cut(s)	15, 57, 81, 446, 478
Alw21I	GWGCWC	2 cut(s)	292, 511
Alw26I	GTCTC	2 cut(s)	106, 515
Alw44I	GTGCAC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	68, 316
AoxI	GGCC	3 cut(s)	172, 211, 494
ApaLI	GTGCAC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	92, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AseI	ATTAAT	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	242
AsuNHI	GCTAGC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	292
BbrPI	CACGTG	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	292, 511
BccI	CCATC	5 cut(s)	182, 239, 335, 511, 602
BciT130I	CCWGG	1 cut(s)	514
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	106, 515
BfaI	CTAG	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	242, 514
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	2 cut(s)	242, 514
BmsI	GCATC	3 cut(s)	151, 579, 662
BmtI	GCTAGC	1 cut(s)	446
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	604
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	175, 512
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 503
Bse1I	ACTGG	4 cut(s)	282, 368, 451, 508
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	175, 512
BseGI	GGATG	4 cut(s)	33, 250, 522, 613
BseLI	CCNNNNNNNGG	2 cut(s)	284, 503
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	4 cut(s)	282, 368, 451, 508
BseRI	GAGGAG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	277
BshFI	GGCC	3 cut(s)	174, 213, 496
BsiHKAI	GWGCWC	2 cut(s)	292, 511
BsiSI	CCGG	2 cut(s)	242, 439
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	284, 503
BsmAI	GTCTC	2 cut(s)	106, 515
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	174, 213, 496
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	292, 511
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	73, 308, 375
BspANI	GGCC	3 cut(s)	174, 213, 496
BspCNI	CTCAG	1 cut(s)	701
BspLI	GGNNCC	1 cut(s)	325
BspOI	GCTAGC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	68, 316
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	712
BsrGI	TGTACA	1 cut(s)	271
BsrI	ACTGG	4 cut(s)	282, 368, 451, 508
BssECI	CCNNGG	2 cut(s)	175, 512
BssMI	GATC	3 cut(s)	73, 308, 375
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	514
BstAUI	TGTACA	1 cut(s)	271
BstBAI	YACGTR	1 cut(s)	604
BstC8I	GCNNGC	2 cut(s)	55, 444
BstDEI	CTNAG	2 cut(s)	401, 688
BstF5I	GGATG	4 cut(s)	33, 250, 522, 613
BstKTI	GATC	3 cut(s)	76, 311, 378
BstMAI	GTCTC	2 cut(s)	106, 515
BstMBI	GATC	3 cut(s)	73, 308, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	705
BstSCI	CCNGG	2 cut(s)	240, 512
BstSLI	GKGCMC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	73, 308
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	2 cut(s)	73, 308
BsuRI	GGCC	3 cut(s)	174, 213, 496
BtrI	CACGTC	1 cut(s)	293
BtsCI	GGATG	4 cut(s)	33, 250, 522, 613
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	3 cut(s)	111, 289, 696
Cac8I	GCNNGC	2 cut(s)	55, 444
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	272, 454
CviAII	CATG	1 cut(s)	702
CviQI	GTAC	2 cut(s)	272, 454
DdeI	CTNAG	2 cut(s)	401, 688
DpnI	GATC	3 cut(s)	75, 310, 377
DpnII	GATC	3 cut(s)	73, 308, 375
DraIII	CACNNNGTG	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	90, 554
Eco72I	CACGTG	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	705
FaiI	YATR	9 cut(s)	182, 321, 348, 474, 566, 615, 662, 682, 703
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	701
FbaI	TGATCA	1 cut(s)	375
FokI	GGATG	4 cut(s)	20, 257, 529, 620
FspBI	CTAG	1 cut(s)	443
GsaI	CCCAGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	3 cut(s)	174, 213, 496
HapII	CCGG	2 cut(s)	242, 439
Hin1II	CATG	1 cut(s)	705
HindIII	AAGCTT	2 cut(s)	79, 476
HpaII	CCGG	2 cut(s)	242, 439
Hpy166II	GTNNAC	2 cut(s)	274, 290
Hpy188I	TCNGA	1 cut(s)	573
Hpy188III	TCNNGA	1 cut(s)	10
Hpy8I	GTNNAC	2 cut(s)	274, 290
HpyAV	CCTTC	1 cut(s)	457
HpyCH4IV	ACGT	2 cut(s)	292, 603
HpyCH4V	TGCA	6 cut(s)	164, 290, 592, 617, 653, 705
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	401, 688
HpySE526I	ACGT	2 cut(s)	292, 603
Hsp92II	CATG	1 cut(s)	705
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	73, 308, 375
LmnI	GCTCC	2 cut(s)	329, 506
LweI	GCATC	3 cut(s)	151, 579, 662
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	2 cut(s)	292, 603
MaeIII	GTNAC	3 cut(s)	62, 334, 596
MalI	GATC	3 cut(s)	75, 310, 377
MboI	GATC	3 cut(s)	73, 308, 375
MboII	GAAGA	2 cut(s)	83, 163
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	2 cut(s)	73, 308
MhlI	GDGCHC	2 cut(s)	292, 511
MluCI	AATT	4 cut(s)	92, 264, 458, 638
MnlI	CCTC	7 cut(s)	91, 127, 132, 141, 144, 542, 695
Mph1103I	ATGCAT	1 cut(s)	619
MseI	TTAA	3 cut(s)	534, 698, 712
MslI	CAYNNNNRTG	2 cut(s)	587, 606
MspI	CCGG	2 cut(s)	242, 439
MspR9I	CCNGG	2 cut(s)	242, 514
MunI	CAATTG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	73, 308, 375
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	1 cut(s)	705
NlaIV	GGNNCC	1 cut(s)	325
NmeAIII	GCCGAG	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	1 cut(s)	705
PceI	AGGCCT	1 cut(s)	174
PflMI	CCANNNNNTGG	2 cut(s)	284, 503
PfoI	TCCNGGA	1 cut(s)	240
PmaCI	CACGTG	1 cut(s)	604
PmlI	CACGTG	1 cut(s)	604
Ppu21I	YACGTR	1 cut(s)	604
PshBI	ATTAAT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	512
PspCI	CACGTG	1 cut(s)	604
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	73, 308
RsaI	GTAC	2 cut(s)	273, 455
RsaNI	GTAC	2 cut(s)	272, 454
RseI	CAYNNNNRTG	2 cut(s)	587, 606
SaqAI	TTAA	3 cut(s)	534, 698, 712
Sau3AI	GATC	3 cut(s)	73, 308, 375
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	242, 514
SduI	GDGCHC	2 cut(s)	292, 511
SetI	ASST	9 cut(s)	17, 59, 83, 102, 295, 448, 480, 606, 687
SfaNI	GCATC	3 cut(s)	151, 579, 662
SmiMI	CAYNNNNRTG	2 cut(s)	587, 606
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	4 cut(s)	92, 264, 458, 638
SseBI	AGGCCT	1 cut(s)	174
SspMI	CTAG	1 cut(s)	443
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	240, 512
StyI	CCWWGG	1 cut(s)	175
TaiI	ACGT	2 cut(s)	295, 606
TaqI	TCGA	1 cut(s)	656
TasI	AATT	4 cut(s)	92, 264, 458, 638
TatI	WGTACW	2 cut(s)	271, 453
Tru1I	TTAA	3 cut(s)	534, 698, 712
Tru9I	TTAA	3 cut(s)	534, 698, 712
TscAI	CASTG	3 cut(s)	118, 289, 696
TspRI	CASTG	3 cut(s)	118, 289, 696
Van91I	CCANNNNNTGG	2 cut(s)	284, 503
VneI	GTGCAC	1 cut(s)	288
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	2 cut(s)	92, 638
XceI	RCATGY	1 cut(s)	705
XspI	CTAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.