pycom06g10010

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0019819
Physical Location & Seq
Forward (+)
15352890 .. 15355232
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
ATGGAGAAATTTGTGAGGGTAGTTTCCATGGCTCCTCTGCTTCTGCTGCTCTGTTTTCCTTTTGCTTTGGCCGGCCATGACTACGGGCAGGCTCTGAGCAACAGCATTCTGTTCTTTGTAGCTCAGAGATCTGGGTTTCTTCCCCCCAACCAGAGAGTCACTTGGAGATCCAATTCTGGCTTGTATGATGGCAAGGCCAATGGGGTGGATCTGGTGGGAGGGTACTATGATGCAGGTGACAATGTGAAGTTTGGGCTTCCCATGGCCTTCACAGTGACAATGATGTCCTGGAGTATAATCGAGTACGGCAGCCAAATGGCTGCAAGTGGCGAGCTCGGCCATGCCATGGATGCCGTCAAATGGGGCACTGACTACTTCATCAAAGCCCACCCTGAACCCAATGTCCTCTATGGCGAGGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGGCCGGAGGACATGACCACTAACCGCCAGGCTTACAAGATCGAGCCCCAGCAATCCCGGGATCGATCTTGCCGGGGAAACCGCCGCCGCCATGGCCGCTGCCTCCATTGTCTTCCGCCGCTCCAACCCCGCATACTCCCGCGAGCTCCTCAGCCACGCGTATCAGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
CBM49 Glyco_hydro_9

Protein Analysis

209

Amino Acids

23.31

Weight (kDa)

8.84

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 28 - 169 3.7e-62 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019819)

Species Orthologous Gene IDs
pyrus_communis pycom06g10010 pycom17g12680
rosa_chinensis RchiOBHm_Chr0c20g0500181 RchiOBHm_Chr1g0340171
rosa_multiflora Rmu_sc0003311.1_g000003 Rmu_sc0032132.1_g000001
rosa_samantha Rh1CG166700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 224
AasI GACNNNNNNGTC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 346
AccBSI CCGCTC 1 cut(s) 574
AccII CGCG 2 cut(s) 595, 612
AciI CCGC 9 cut(s) 478, 535, 538, 541, 550, 569, 572, 583, 593
AclWI GGATC 3 cut(s) 162, 216, 522
AcoI YGGCCR 4 cut(s) 69, 73, 337, 547
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 2 cut(s) 224, 305
AfiI CCNNNNNNNGG 2 cut(s) 346, 360
AflIII ACRYGT 1 cut(s) 610
AjnI CCWGG 2 cut(s) 287, 480
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 4 cut(s) 122, 334, 599, 620
AluI AGCT 4 cut(s) 122, 334, 599, 620
Alw21I GWGCWC 2 cut(s) 336, 601
AlwI GGATC 3 cut(s) 162, 216, 522
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 7 cut(s) 69, 73, 195, 264, 337, 455, 547
ApeKI GCWGC 4 cut(s) 46, 309, 320, 552
ApoI RAATTY 1 cut(s) 8
AsuC2I CCSGG 3 cut(s) 511, 512, 527
AsuHPI GGTGA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 368
BanII GRGCYC 3 cut(s) 336, 501, 601
BbsI GAAGAC 1 cut(s) 557
Bbv12I GWGCWC 2 cut(s) 336, 601
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 4 cut(s) 33, 307, 321, 539
BccI CCATC 2 cut(s) 182, 419
BceAI ACGGC 2 cut(s) 322, 338
BciT130I CCWGG 2 cut(s) 289, 482
BcnI CCSGG 3 cut(s) 511, 512, 527
BfuAI ACCTGC 1 cut(s) 224
BglI GCCNNNNNGGC 1 cut(s) 546
BglII AGATCT 1 cut(s) 128
BisI GCNGC 8 cut(s) 47, 310, 321, 538, 541, 550, 553, 572
BlsI GCNGC 8 cut(s) 48, 311, 322, 539, 542, 551, 554, 573
Bme1390I CCNGG 5 cut(s) 289, 482, 511, 512, 527
BmeT110I CYCGRG 1 cut(s) 510
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 5 cut(s) 289, 482, 511, 512, 527
BmsI GCATC 2 cut(s) 220, 340
BpiI GAAGAC 1 cut(s) 557
BpmI CTGGAG 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 603
BpuMI CCSGG 3 cut(s) 511, 512, 527
Bsa29I ATCGAT 1 cut(s) 517
BsaJI CCNNGG 6 cut(s) 27, 261, 345, 510, 526, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 360
Bse118I RCCGGY 1 cut(s) 71
BseBI CCWGG 2 cut(s) 289, 482
BseCI ATCGAT 1 cut(s) 517
BseDI CCNNGG 6 cut(s) 27, 261, 345, 510, 526, 544
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 2 cut(s) 346, 360
BseMII CTCAG 3 cut(s) 86, 137, 617
BseRI GAGGAG 2 cut(s) 24, 591
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 4 cut(s) 33, 307, 321, 539
BseYI CCCAGC 1 cut(s) 501
Bsh1236I CGCG 2 cut(s) 595, 612
BshFI GGCC 7 cut(s) 71, 75, 197, 266, 339, 457, 549
BshVI ATCGAT 1 cut(s) 517
BsiHKAI GWGCWC 2 cut(s) 336, 601
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 4 cut(s) 72, 458, 511, 526
BslI CCNNNNNNNGG 2 cut(s) 346, 360
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 7 cut(s) 71, 75, 197, 266, 339, 457, 549
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 4 cut(s) 336, 368, 501, 601
Bsp143I GATC 6 cut(s) 128, 167, 208, 492, 514, 518
Bsp19I CCATGG 4 cut(s) 27, 261, 345, 544
BspACI CCGC 9 cut(s) 478, 535, 538, 541, 550, 569, 572, 583, 593
BspANI GGCC 7 cut(s) 71, 75, 197, 266, 339, 457, 549
BspCNI CTCAG 3 cut(s) 87, 136, 616
BspDI ATCGAT 1 cut(s) 517
BspFNI CGCG 2 cut(s) 595, 612
BspLI GGNNCC 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 224
BspPI GGATC 3 cut(s) 162, 216, 522
BsrBI CCGCTC 1 cut(s) 574
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 6 cut(s) 27, 261, 345, 510, 526, 544
BssMI GATC 6 cut(s) 128, 167, 208, 492, 514, 518
BssT1I CCWWGG 4 cut(s) 27, 261, 345, 544
Bst2UI CCWGG 2 cut(s) 289, 482
Bst4CI ACNGT 2 cut(s) 274, 446
BstC8I GCNNGC 4 cut(s) 73, 90, 332, 597
BstDEI CTNAG 3 cut(s) 95, 123, 603
BstDSI CCRYGG 4 cut(s) 27, 261, 345, 544
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 2 cut(s) 595, 612
BstKTI GATC 6 cut(s) 131, 170, 211, 495, 517, 521
BstMBI GATC 6 cut(s) 128, 167, 208, 492, 514, 518
BstMWI GCNNNNNNNGC 5 cut(s) 46, 336, 350, 546, 549
BstNI CCWGG 2 cut(s) 289, 482
BstSCI CCNGG 5 cut(s) 287, 480, 509, 510, 525
BstSLI GKGCMC 1 cut(s) 368
BstUI CGCG 2 cut(s) 595, 612
BstV1I GCAGC 4 cut(s) 33, 307, 321, 539
BstV2I GAAGAC 1 cut(s) 557
BstX2I RGATCY 3 cut(s) 128, 167, 208
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 3 cut(s) 128, 167, 208
Bsu15I ATCGAT 1 cut(s) 517
BsuRI GGCC 7 cut(s) 71, 75, 197, 266, 339, 457, 549
BsuTUI ATCGAT 1 cut(s) 517
BtgI CCRYGG 4 cut(s) 27, 261, 345, 544
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 3 cut(s) 279, 366, 432
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 4 cut(s) 73, 90, 332, 597
CaiI CAGNNNCTG 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 71
Cfr9I CCCGGG 1 cut(s) 510
ClaI ATCGAT 1 cut(s) 517
Csp6I GTAC 2 cut(s) 223, 304
CviAII CATG 7 cut(s) 28, 77, 262, 341, 346, 466, 545
CviQI GTAC 2 cut(s) 223, 304
DdeI CTNAG 3 cut(s) 95, 123, 603
DpnI GATC 6 cut(s) 130, 169, 210, 494, 516, 520
DpnII GATC 6 cut(s) 128, 167, 208, 492, 514, 518
DrdI GACNNNNNNGTC 1 cut(s) 283
DseDI GACNNNNNNGTC 1 cut(s) 283
EaeI YGGCCR 4 cut(s) 69, 73, 337, 547
EciI GGCGGA 1 cut(s) 558
Ecl136II GAGCTC 2 cut(s) 334, 599
Eco130I CCWWGG 4 cut(s) 27, 261, 345, 544
Eco24I GRGCYC 3 cut(s) 336, 501, 601
Eco53kI GAGCTC 2 cut(s) 334, 599
Eco88I CYCGRG 1 cut(s) 510
EcoICRI GAGCTC 2 cut(s) 334, 599
EcoRII CCWGG 2 cut(s) 287, 480
EcoT14I CCWWGG 4 cut(s) 27, 261, 345, 544
EcoT38I GRGCYC 3 cut(s) 336, 501, 601
ErhI CCWWGG 4 cut(s) 27, 261, 345, 544
FaeI CATG 7 cut(s) 31, 80, 265, 344, 349, 469, 548
FatI CATG 7 cut(s) 27, 76, 261, 340, 345, 465, 544
FauI CCCGC 2 cut(s) 590, 600
Fnu4HI GCNGC 8 cut(s) 47, 310, 321, 538, 541, 550, 553, 572
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 3 cut(s) 336, 501, 601
FseI GGCCGGCC 1 cut(s) 75
Fsp4HI GCNGC 8 cut(s) 47, 310, 321, 538, 541, 550, 553, 572
GluI GCNGC 8 cut(s) 47, 310, 321, 538, 541, 550, 553, 572
GsaI CCCAGC 1 cut(s) 505
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 7 cut(s) 71, 75, 197, 266, 339, 457, 549
HapII CCGG 4 cut(s) 72, 458, 511, 526
Hin1II CATG 7 cut(s) 31, 80, 265, 344, 349, 469, 548
HinfI GANTC 1 cut(s) 156
HpaII CCGG 4 cut(s) 72, 458, 511, 526
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 96, 126
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 274, 446
HpyCH4V TGCA 2 cut(s) 233, 323
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 336, 350, 546, 549
HpyF3I CTNAG 3 cut(s) 95, 123, 603
Hsp92II CATG 7 cut(s) 31, 80, 265, 344, 349, 469, 548
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 6 cut(s) 128, 167, 208, 492, 514, 518
LmnI GCTCC 3 cut(s) 37, 579, 604
Lsp1109I GCAGC 4 cut(s) 33, 307, 321, 539
LweI GCATC 2 cut(s) 220, 340
MaeIII GTNAC 3 cut(s) 157, 236, 274
MalI GATC 6 cut(s) 130, 169, 210, 494, 516, 520
MbiI CCGCTC 1 cut(s) 574
MboI GATC 6 cut(s) 128, 167, 208, 492, 514, 518
MboII GAAGA 2 cut(s) 131, 557
MflI RGATCY 3 cut(s) 128, 167, 208
MhlI GDGCHC 4 cut(s) 336, 368, 501, 601
MluCI AATT 2 cut(s) 8, 172
MluI ACGCGT 1 cut(s) 610
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 601
MnlI CCTC 8 cut(s) 9, 45, 212, 409, 416, 454, 566, 612
MroNI GCCGGC 1 cut(s) 71
MspA1I CMGCKG 2 cut(s) 552, 620
MspI CCGG 4 cut(s) 72, 458, 511, 526
MspR9I CCNGG 5 cut(s) 289, 482, 511, 512, 527
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 2 cut(s) 289, 482
MvnI CGCG 2 cut(s) 595, 612
MwoI GCNNNNNNNGC 5 cut(s) 46, 336, 350, 546, 549
NaeI GCCGGC 1 cut(s) 73
NciI CCSGG 3 cut(s) 511, 512, 527
NcoI CCATGG 4 cut(s) 27, 261, 345, 544
NdeII GATC 6 cut(s) 128, 167, 208, 492, 514, 518
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 7 cut(s) 31, 80, 265, 344, 349, 469, 548
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 315
NmuCI GTSAC 3 cut(s) 157, 236, 274
PaqCI CACCTGC 1 cut(s) 224
PctI GAATGC 1 cut(s) 105
PdiI GCCGGC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 287
PkrI GCNGC 8 cut(s) 48, 311, 322, 539, 542, 551, 554, 573
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp124BI GAGCTC 2 cut(s) 336, 601
Psp6I CCWGG 2 cut(s) 287, 480
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 2 cut(s) 287, 480
PspN4I GGNNCC 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 3 cut(s) 128, 167, 208
PvuII CAGCTG 1 cut(s) 620
RigI GGCCGGCC 1 cut(s) 75
RsaI GTAC 2 cut(s) 224, 305
RsaNI GTAC 2 cut(s) 223, 304
SacI GAGCTC 2 cut(s) 336, 601
SatI GCNGC 8 cut(s) 47, 310, 321, 538, 541, 550, 553, 572
Sau3AI GATC 6 cut(s) 128, 167, 208, 492, 514, 518
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 5 cut(s) 289, 482, 511, 512, 527
SduI GDGCHC 4 cut(s) 336, 368, 501, 601
SetI ASST 6 cut(s) 124, 238, 336, 420, 601, 622
SfaNI GCATC 2 cut(s) 220, 340
SmaI CCCGGG 1 cut(s) 512
Sse9I AATT 2 cut(s) 8, 172
SsiI CCGC 9 cut(s) 478, 535, 538, 541, 550, 569, 572, 583, 593
SstI GAGCTC 2 cut(s) 336, 601
StyD4I CCNGG 5 cut(s) 287, 480, 509, 510, 525
StyI CCWWGG 4 cut(s) 27, 261, 345, 544
TaaI ACNGT 2 cut(s) 274, 446
TaqI TCGA 3 cut(s) 300, 495, 517
TasI AATT 2 cut(s) 8, 172
TauI GCSGC 4 cut(s) 540, 543, 552, 574
TscAI CASTG 3 cut(s) 279, 373, 439
TseFI GTSAC 3 cut(s) 157, 236, 274
TseI GCWGC 4 cut(s) 46, 309, 320, 552
Tsp45I GTSAC 3 cut(s) 157, 236, 274
TspDTI ATGAA 1 cut(s) 367
TspMI CCCGGG 1 cut(s) 510
TspRI CASTG 3 cut(s) 279, 373, 439
Van91I CCANNNNNTGG 1 cut(s) 346
XapI RAATTY 1 cut(s) 8
XmaI CCCGGG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.