pycom06g10470

Protein of unknown function (DUF2439)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
15784159 .. 15787861
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10470.9

Sequence Viewer

Length: 1611 bp
ATGGCGGAGGTGAAGCGGTGGAGCGTGACCTACACGAAGCACATGAAGCAGAAGCGCAAGGTCTACCAGGACGGCTCCTTAGAGCTCAACTCCTCCACCAATAAGATGTTGCTGTTTGACGACTGCGAGAAGCTCCTGGAGTGCAGGATCTTGAAGAAAGACGAACAAGTCAGCAGCGGCGAAACTCTCACGTTCAATTCTTTTCTCGTTGACGTGAACGAAGCCTTATCGGCTGACGGAGATCTAAAACCTGTACCTGGTTTCAATTCTCGGGCAAAAGATGAGAAGCGCGCAAAGCCGTTTGTGATTTCCAGGAATAAGCCACAGATAAGTATGAGTCCGTCGCAAAAGATTATCAGAGAGTTTAAGAGTAGGGGACTACACAAGTATGGCGCAGGACAGAGTAGTCCAGAAACGACGAATACTACCAAAACAGAGTGGCAGGTTTTGTACACCACCCAACTAACTCAAAAGGCCAAGAAGTATCATGATGGTTTCTTACAGTTTTCGACTTCTGGGTCTTACGGAAAGCAGATAATACTGTTAGATGCAAGCAGGAATCAAATAGACTGCAGGTTCCTTAAGAAAGATGAAGTGGTAGCTTCCGGTGAATCAATAAGATTTGATGCTCATTTAGTTGAAATTGGAGAACGTGAAGGAGATCGTAAACCTGTAGCAGATTTGCCTATAAGAGAAAACAAACATAATGTTGTCGCTGAGGCAGGAATAAACCTTGAACAGGGTAATGGTGTTATCACCAATAAAGGTGCTGGAAAAGAATGGAAGGTCCTCTACACTACACAAATAACTCAAAAGGCCAAAAAGTACCATGATGGTTTTTTAAAGCTCGCATTGTGTGGCTCCCAAAGGAGGCAGGTTAGTTTATTTAGTGAAGATAAAACCATGCTGAGTAGTAAGCACATCAGTTTGTCTGAAGATATAAGACAAGGTTGTATGTTTGAGCTACCAAAATATCTGGTGGAGGTCGGTGAAACTTATGCTAGTTCTGGAGAGGATGAAGGAAAGTCCGATGACAAAGATTGTTTGAAGAAAGCTTCAAACTCAAATCATAGCATCTCCAGAGTTGAGGAAACAAAACCAGGGAGGGCAGTCCCTACAAACAAGCCTTTGCGTGACGCCCGTCAGATTTTGTCCATTCTCCAAAAACCTATGGCTCAGGAGAGCAAAATTTCCAGTCATGATAACAACAGCACGGCTAGGCCAGTTACCACCGCTAAGGGGTCACATGTTTCAGATGCTATAATATTGGATTCCTCTGAACCTGATCAACTGTCACAACCACATAGAATAGCTGTGAAAATAGAACCGAGTGAAAAGATGGACACTGGAAAACCCCCTAGATTTCCGAAATTAGGCAAATCCGGCGGTAGTGGCAGGCGAGTTGCTGAGGGAGCTGACATCAGAAAAGACCAGCAATATTCAGGCAATGTGGAAGCTGACACTAAACAGCGTGACAGAACATACGCTTCTGAGAAATCAAGTCTCAGTTCTTATGCTTCTCATGATGCTGCTGATGAGGAAAGACCTCGTTTTGAGGAGCCTGTTTTGGAGCAAATCGAAGTATGCCCAAGTTTTGATCTTGGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

59.92

Weight (kDa)

8.75

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 167, 405, 517
Acc36I ACCTGC 3 cut(s) 433, 564, 865
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 291
AciI CCGC 5 cut(s) 5, 16, 177, 1233, 1386
AclWI GGATC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 1188
AcuI CTGAAG 1 cut(s) 954
AcyI GRCGYC 1 cut(s) 1137
AfaI GTAC 3 cut(s) 255, 452, 827
AfiI CCNNNNNNNGG 5 cut(s) 257, 739, 870, 1239, 1373
AflII CTTAAG 1 cut(s) 581
AflIII ACRYGT 1 cut(s) 1246
AgsI TTSAA 7 cut(s) 154, 196, 265, 641, 737, 1048, 1059
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 5 cut(s) 66, 135, 256, 311, 1099
AluBI AGCT 9 cut(s) 85, 133, 602, 847, 964, 1055, 1313, 1415, 1457
AluI AGCT 9 cut(s) 85, 133, 602, 847, 964, 1055, 1313, 1415, 1457
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 1508
AlwI GGATC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 3 cut(s) 474, 816, 1220
ApeKI GCWGC 2 cut(s) 174, 1529
ApoI RAATTY 1 cut(s) 1188
AspLEI GCGC 4 cut(s) 57, 291, 293, 395
AspS9I GGNCC 1 cut(s) 787
AsuHPI GGTGA 4 cut(s) 22, 620, 748, 1001
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 776, 808
Bbv12I GWGCWC 1 cut(s) 87
BbvCI CCTCAGC 2 cut(s) 717, 1407
BbvI GCAGC 2 cut(s) 186, 1516
BccI CCATC 3 cut(s) 485, 827, 1333
BceAI ACGGC 3 cut(s) 88, 283, 1230
BciT130I CCWGG 5 cut(s) 68, 137, 258, 313, 1101
BclI TGATCA 1 cut(s) 1285
BcoDI GTCTC 1 cut(s) 1508
BfaI CTAG 3 cut(s) 1002, 1218, 1359
BfmI CTRYAG 2 cut(s) 571, 672
BfrI CTTAAG 1 cut(s) 581
BfuAI ACCTGC 3 cut(s) 433, 564, 865
BglI GCCNNNNNGGC 1 cut(s) 230
BglII AGATCT 1 cut(s) 241
BisI GCNGC 3 cut(s) 175, 178, 1530
BlsI GCNGC 3 cut(s) 176, 179, 1531
Bme1390I CCNGG 5 cut(s) 68, 137, 258, 313, 1101
Bme18I GGWCC 1 cut(s) 787
BmeT110I CYCGRG 1 cut(s) 270
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 787
BmiI GGNNCC 4 cut(s) 76, 578, 862, 1560
BmrFI CCNGG 5 cut(s) 68, 137, 258, 313, 1101
BmsI GCATC 5 cut(s) 538, 616, 1083, 1246, 1516
BoxI GACNNNNGTC 1 cut(s) 1140
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 3 cut(s) 158, 1029, 1063
Bpu10I CCTNAGC 4 cut(s) 717, 1176, 1236, 1407
BsaHI GRCGYC 1 cut(s) 1137
BsaJI CCNNGG 1 cut(s) 1100
BsaWI WCCGGW 1 cut(s) 605
Bsc4I CCNNNNNNNGG 5 cut(s) 257, 739, 870, 1239, 1373
Bse1I ACTGG 3 cut(s) 1194, 1223, 1351
Bse3DI GCAATG 1 cut(s) 1453
BseBI CCWGG 5 cut(s) 68, 137, 258, 313, 1101
BseDI CCNNGG 1 cut(s) 1100
BseGI GGATG 1 cut(s) 1021
BseLI CCNNNNNNNGG 5 cut(s) 257, 739, 870, 1239, 1373
BseMI GCAATG 1 cut(s) 1453
BseMII CTCAG 6 cut(s) 708, 899, 1190, 1398, 1482, 1519
BseNI ACTGG 3 cut(s) 1194, 1223, 1351
BsePI GCGCGC 1 cut(s) 289
BseRI GAGGAG 2 cut(s) 82, 1571
BseXI GCAGC 2 cut(s) 186, 1516
BsgI GTGCAG 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 3 cut(s) 476, 818, 1222
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 2 cut(s) 606, 1383
BslFI GGGAC 2 cut(s) 390, 1097
BslI CCNNNNNNNGG 5 cut(s) 257, 739, 870, 1239, 1373
BsmAI GTCTC 1 cut(s) 1508
BsmFI GGGAC 2 cut(s) 390, 1097
BsnI GGCC 3 cut(s) 476, 818, 1222
BsoBI CYCGRG 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 5 cut(s) 147, 241, 661, 1285, 1597
BspACI CCGC 5 cut(s) 5, 16, 177, 1233, 1386
BspANI GGCC 3 cut(s) 476, 818, 1222
BspCNI CTCAG 6 cut(s) 709, 900, 1189, 1399, 1483, 1518
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 3 cut(s) 487, 1198, 1522
BspLI GGNNCC 4 cut(s) 76, 578, 862, 1560
BspMAI CTGCAG 1 cut(s) 575
BspMI ACCTGC 3 cut(s) 433, 564, 865
BspPI GGATC 1 cut(s) 155
BspTI CTTAAG 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 1453
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 3 cut(s) 1194, 1223, 1351
BssECI CCNNGG 1 cut(s) 1100
BssHII GCGCGC 1 cut(s) 289
BssMI GATC 5 cut(s) 147, 241, 661, 1285, 1597
BssNI GRCGYC 1 cut(s) 1137
Bst2UI CCWGG 5 cut(s) 68, 137, 258, 313, 1101
Bst4CI ACNGT 3 cut(s) 504, 543, 1293
BstACI GRCGYC 1 cut(s) 1137
BstAFI CTTAAG 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 4 cut(s) 291, 553, 849, 1397
BstDEI CTNAG 8 cut(s) 79, 717, 908, 1176, 1236, 1407, 1491, 1505
BstENI CCTNNNNNAGG 1 cut(s) 737
BstF5I GGATG 1 cut(s) 1021
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 4 cut(s) 57, 291, 293, 395
BstKTI GATC 5 cut(s) 150, 244, 664, 1288, 1600
BstMAI GTCTC 1 cut(s) 1508
BstMBI GATC 5 cut(s) 147, 241, 661, 1285, 1597
BstMWI GCNNNNNNNGC 6 cut(s) 46, 230, 295, 1383, 1392, 1412
BstNI CCWGG 5 cut(s) 68, 137, 258, 313, 1101
BstNSI RCATGY 1 cut(s) 1250
BstPAI GACNNNNGTC 1 cut(s) 1140
BstSCI CCNGG 5 cut(s) 66, 135, 256, 311, 1099
BstSFI CTRYAG 2 cut(s) 571, 672
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 186, 1516
BstX2I RGATCY 2 cut(s) 147, 241
BstYI RGATCY 2 cut(s) 147, 241
BsuRI GGCC 3 cut(s) 476, 818, 1222
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 1021
BtsIMutI CAGTG 1 cut(s) 1344
BveI ACCTGC 3 cut(s) 433, 564, 865
Cac8I GCNNGC 4 cut(s) 291, 553, 849, 1397
CciI TCATGA 3 cut(s) 487, 1198, 1522
CfoI GCGC 4 cut(s) 57, 291, 293, 395
Cfr13I GGNCC 1 cut(s) 787
CseI GACGC 1 cut(s) 1145
CsiI ACCWGGT 1 cut(s) 256
Csp6I GTAC 3 cut(s) 254, 451, 826
CviAII CATG 7 cut(s) 43, 488, 830, 904, 1199, 1247, 1523
CviQI GTAC 3 cut(s) 254, 451, 826
DdeI CTNAG 8 cut(s) 79, 717, 908, 1176, 1236, 1407, 1491, 1505
DpnI GATC 5 cut(s) 149, 243, 663, 1287, 1599
DpnII GATC 5 cut(s) 147, 241, 661, 1285, 1597
DraI TTTAAA 1 cut(s) 843
DrdI GACNNNNNNGTC 3 cut(s) 167, 405, 517
DseDI GACNNNNNNGTC 3 cut(s) 167, 405, 517
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 787
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 954
Eco88I CYCGRG 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 737
EcoO109I RGGNCCY 1 cut(s) 787
EcoRII CCWGG 5 cut(s) 66, 135, 256, 311, 1099
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 7 cut(s) 46, 491, 833, 907, 1202, 1250, 1526
FaqI GGGAC 2 cut(s) 390, 1097
FatI CATG 7 cut(s) 42, 487, 829, 903, 1198, 1246, 1522
FbaI TGATCA 1 cut(s) 1285
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 175, 178, 1530
FokI GGATG 1 cut(s) 1028
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 3 cut(s) 175, 178, 1530
FspBI CTAG 3 cut(s) 1002, 1218, 1359
GlaI GCGC 4 cut(s) 56, 290, 292, 394
GluI GCNGC 3 cut(s) 175, 178, 1530
GsuI CTGGAG 3 cut(s) 158, 1029, 1063
HaeIII GGCC 3 cut(s) 476, 818, 1222
HapII CCGG 2 cut(s) 606, 1383
HgaI GACGC 1 cut(s) 1145
HhaI GCGC 4 cut(s) 57, 291, 293, 395
Hin1I GRCGYC 1 cut(s) 1137
Hin1II CATG 7 cut(s) 46, 491, 833, 907, 1202, 1250, 1526
Hin6I GCGC 4 cut(s) 55, 289, 291, 393
HinP1I GCGC 4 cut(s) 55, 289, 291, 393
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 1053
HinfI GANTC 4 cut(s) 337, 559, 611, 1271
HpaII CCGG 2 cut(s) 606, 1383
HphI GGTGA 4 cut(s) 22, 620, 748, 1001
Hpy166II GTNNAC 5 cut(s) 64, 211, 217, 453, 668
Hpy188I TCNGA 9 cut(s) 359, 934, 1030, 1146, 1255, 1279, 1368, 1424, 1492
Hpy188III TCNNGA 8 cut(s) 151, 410, 488, 1008, 1080, 1178, 1199, 1523
Hpy8I GTNNAC 5 cut(s) 64, 211, 217, 453, 668
Hpy99I CGWCG 2 cut(s) 346, 421
HpyAV CCTTC 3 cut(s) 650, 778, 1013
HpyCH4III ACNGT 3 cut(s) 504, 543, 1293
HpyCH4IV ACGT 3 cut(s) 191, 213, 652
HpyCH4V TGCA 3 cut(s) 144, 551, 573
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 230, 295, 1383, 1392, 1412
HpyF3I CTNAG 8 cut(s) 79, 717, 908, 1176, 1236, 1407, 1491, 1505
HpySE526I ACGT 3 cut(s) 191, 213, 652
Hsp92I GRCGYC 1 cut(s) 1137
Hsp92II CATG 7 cut(s) 46, 491, 833, 907, 1202, 1250, 1526
HspAI GCGC 4 cut(s) 55, 289, 291, 393
Ksp22I TGATCA 1 cut(s) 1285
Kzo9I GATC 5 cut(s) 147, 241, 661, 1285, 1597
LmnI GCTCC 7 cut(s) 21, 80, 138, 866, 1412, 1558, 1570
Lsp1109I GCAGC 2 cut(s) 186, 1516
LweI GCATC 5 cut(s) 538, 616, 1083, 1246, 1516
MabI ACCWGGT 1 cut(s) 256
MaeI CTAG 3 cut(s) 1002, 1218, 1359
MaeII ACGT 3 cut(s) 191, 213, 652
MaeIII GTNAC 6 cut(s) 25, 1133, 1225, 1242, 1293, 1472
MalI GATC 5 cut(s) 149, 243, 663, 1287, 1599
MboI GATC 5 cut(s) 147, 241, 661, 1285, 1597
MboII GAAGA 4 cut(s) 166, 905, 947, 1060
MflI RGATCY 2 cut(s) 147, 241
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 5 cut(s) 196, 265, 642, 1188, 1370
MlyI GAGTC 1 cut(s) 346
MseI TTAA 4 cut(s) 366, 582, 842, 1609
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 177
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 2 cut(s) 606, 1383
MspR9I CCNGG 5 cut(s) 68, 137, 258, 313, 1101
MvaI CCWGG 5 cut(s) 68, 137, 258, 313, 1101
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 6 cut(s) 46, 230, 295, 1383, 1392, 1412
NdeII GATC 5 cut(s) 147, 241, 661, 1285, 1597
NlaIII CATG 7 cut(s) 46, 491, 833, 907, 1202, 1250, 1526
NlaIV GGNNCC 4 cut(s) 76, 578, 862, 1560
NmuCI GTSAC 5 cut(s) 25, 1133, 1242, 1293, 1472
NspI RCATGY 1 cut(s) 1250
PagI TCATGA 3 cut(s) 487, 1198, 1522
PauI GCGCGC 1 cut(s) 289
PciI ACATGT 1 cut(s) 1246
PfeI GAWTC 3 cut(s) 559, 611, 1271
PfoI TCCNGGA 2 cut(s) 135, 311
PkrI GCNGC 3 cut(s) 176, 179, 1531
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PpuMI RGGWCCY 1 cut(s) 787
PscI ACATGT 1 cut(s) 1246
PshAI GACNNNNGTC 1 cut(s) 1140
Psp124BI GAGCTC 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 5 cut(s) 66, 135, 256, 311, 1099
PspGI CCWGG 5 cut(s) 66, 135, 256, 311, 1099
PspN4I GGNNCC 4 cut(s) 76, 578, 862, 1560
PspPI GGNCC 1 cut(s) 787
PspPPI RGGWCCY 1 cut(s) 787
PstI CTGCAG 1 cut(s) 575
PsuI RGATCY 2 cut(s) 147, 241
PteI GCGCGC 1 cut(s) 289
RsaI GTAC 3 cut(s) 255, 452, 827
RsaNI GTAC 3 cut(s) 254, 451, 826
RseI CAYNNNNRTG 1 cut(s) 387
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 4 cut(s) 366, 582, 842, 1609
SatI GCNGC 3 cut(s) 175, 178, 1530
Sau3AI GATC 5 cut(s) 147, 241, 661, 1285, 1597
Sau96I GGNCC 1 cut(s) 787
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 5 cut(s) 68, 137, 258, 313, 1101
SduI GDGCHC 1 cut(s) 87
SexAI ACCWGGT 1 cut(s) 256
SfaNI GCATC 5 cut(s) 538, 616, 1083, 1246, 1516
SfcI CTRYAG 2 cut(s) 571, 672
SinI GGWCC 1 cut(s) 787
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 5 cut(s) 196, 265, 642, 1188, 1370
SsiI CCGC 5 cut(s) 5, 16, 177, 1233, 1386
SspI AATATT 2 cut(s) 1266, 1439
SspMI CTAG 3 cut(s) 1002, 1218, 1359
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 5 cut(s) 66, 135, 256, 311, 1099
TaaI ACNGT 3 cut(s) 504, 543, 1293
TaiI ACGT 3 cut(s) 194, 216, 655
TaqI TCGA 2 cut(s) 509, 1578
TasI AATT 5 cut(s) 196, 265, 642, 1188, 1370
TatI WGTACW 1 cut(s) 450
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 3 cut(s) 559, 611, 1271
Tru1I TTAA 4 cut(s) 366, 582, 842, 1609
Tru9I TTAA 4 cut(s) 366, 582, 842, 1609
TscAI CASTG 1 cut(s) 1351
TseFI GTSAC 5 cut(s) 25, 1133, 1242, 1293, 1472
TseI GCWGC 2 cut(s) 174, 1529
Tsp45I GTSAC 5 cut(s) 25, 1133, 1242, 1293, 1472
TspDTI ATGAA 3 cut(s) 59, 606, 1032
TspGWI ACGGA 3 cut(s) 252, 330, 540
TspRI CASTG 1 cut(s) 1351
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 787
XagI CCTNNNNNAGG 1 cut(s) 737
XapI RAATTY 1 cut(s) 1188
XceI RCATGY 1 cut(s) 1250
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 3 cut(s) 1002, 1218, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.