Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007351

Physical Location & Seq

Genomic Coordinates Reverse (-)

59524375 .. 59527565

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0472600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGAATTTGAGAGTAAAAGAGTTGCAGATTTCTGGGTTAAGGGGTGGTGAGAGACCACATGAAGTGGACCCTCCTTCGGAATTGGGTACTCCGGCCGCAACAGAAACTATGTCTATTGAATGGACAGATGAGAAACACAGTATGTACCTAAAATCTATGGAAGCATCGTTTGTTAACCAGTTGTATAACTCCATGGATACACGTGGTCGGCACAAGGGGAACTTGTCACATATAAAATCATCCAAGCAACCCCAATTCAATTCTCGTGCTGCTTCTGGCCAGTTTAAGGTACTTCGAGGTGGCTGCTGGCAGAAAATCAATTTTGGAAGAGGTGAAGCTGAAGTAAATAAGTCAGATCAACCTTGTGGTGATCTTCTGGCAAATCCGTGGATCCTGCACTTCAGATCCACCTGCAAGCCAAAAGATGTTGAATCTCCTATTCTCCAAGAACAGGCTGCGGCTATATGTGAAGAAGTTGATTCAAGTTTGAAGAAAGAAATTACTTCTGCACCAGCTACTTGTTCGAAGCAGTTTAATGTATCTCACTCTCATTTGATGCATCAGGATATGGTTGGCGGCAACACAGAGGTGTCAGACCAAAACTTCGCTGATGAAGATATCAAAGAGAAAAAGGCCATTACTTCATGCAATTCTAAGAGGATGAAAGCTCTTATACTTCAAGCCTCAAGTAACGATCAGCTTCATGAAGGGAGAGTCTGTAAAAGAAAGCAGATGGATTGTCTGGTCACCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009507 GO:0009536 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

252

Amino Acids

28.18

Weight (kDa)

7.1

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64530 AT1G64530 AT4G24020 AT4G24020
fragaria_vesca	FvH4_5g11570 FvH4_5g11570
malus_domestica	MD06G1111900.v1.1 MD14G1133200.v1.1 MD14G1133300.v1.1
prunus_persica	Prupe.5G124900_v2.0.a1 Prupe.5G124900_v2.0.a1 Prupe.5G125000_v2.0.a1
pyrus_communis	pycom06g10490
rosa_chinensis	RchiOBHm_Chr7g0186181
rosa_laevigata	RLG00000004858
rosa_multiflora	Rmu_sc0009528.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268340
rosa_rugosa	Rorug06G0472600 Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068900 Rh7BG084800 Rh7CG079200 Rh7DG079400
rosa_wichuraiana	Rw7G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	422
AciI	CCGC	3 cut(s)	99, 461, 579
AclWI	GGATC	3 cut(s)	388, 401, 402
AcoI	YGGCCR	2 cut(s)	96, 280
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	363, 388
AcvI	CACGTG	1 cut(s)	206
AfaI	GTAC	3 cut(s)	91, 149, 294
AfiI	CCNNNNNNNGG	3 cut(s)	79, 289, 454
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	6 cut(s)	122, 262, 434, 486, 493, 683
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	4 cut(s)	341, 518, 671, 703
AluI	AGCT	4 cut(s)	341, 518, 671, 703
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	388, 401, 402
AoxI	GGCC	3 cut(s)	96, 280, 636
ApeKI	GCWGC	3 cut(s)	272, 306, 458
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	4 cut(s)	62, 347, 383, 742
AsuII	TTCGAA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	259, 293, 445
BccI	CCATC	1 cut(s)	730
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	6 cut(s)	99, 273, 307, 459, 462, 580
BlsI	GCNGC	6 cut(s)	100, 274, 308, 460, 463, 581
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	72, 395
BmsI	GCATC	3 cut(s)	176, 549, 571
Bpu14I	TTCGAA	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	673
BsaAI	YACGTR	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	195, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 289, 454
Bse1I	ACTGG	2 cut(s)	181, 283
BseDI	CCNNGG	2 cut(s)	195, 389
BseGI	GGATG	2 cut(s)	242, 669
BseLI	CCNNNNNNNGG	3 cut(s)	79, 289, 454
BseNI	ACTGG	2 cut(s)	181, 283
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	3 cut(s)	259, 293, 445
BsgI	GTGCAG	2 cut(s)	383, 495
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	98, 282, 638
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	79, 289, 454
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	98, 282, 638
Bso31I	GGTCTC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	527
Bsp143I	GATC	5 cut(s)	358, 373, 393, 407, 697
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	99, 461, 579
BspANI	GGCC	3 cut(s)	98, 282, 638
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	72, 395
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	388, 401, 402
BspT104I	TTCGAA	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	181, 283
BssECI	CCNNGG	2 cut(s)	195, 389
BssMI	GATC	5 cut(s)	358, 373, 393, 407, 697
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	325
BstBAI	YACGTR	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	311, 419
BstDEI	CTNAG	1 cut(s)	657
BstDSI	CCRYGG	2 cut(s)	195, 389
BstEII	GGTNACC	1 cut(s)	748
BstF5I	GGATG	2 cut(s)	242, 669
BstKTI	GATC	5 cut(s)	361, 376, 396, 410, 700
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	358, 373, 393, 407, 697
BstMCI	CGRYCG	1 cut(s)	99
BstPI	GGTNACC	1 cut(s)	748
BstV1I	GCAGC	3 cut(s)	259, 293, 445
BstX2I	RGATCY	2 cut(s)	393, 407
BstYI	RGATCY	2 cut(s)	393, 407
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	98, 282, 638
BtgI	CCRYGG	2 cut(s)	195, 389
BtsCI	GGATG	2 cut(s)	242, 669
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	311, 419
CciI	TCATGA	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	90, 148, 293
CviAII	CATG	4 cut(s)	62, 196, 648, 707
CviQI	GTAC	3 cut(s)	90, 148, 293
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	5 cut(s)	360, 375, 395, 409, 699
DpnII	GATC	5 cut(s)	358, 373, 393, 407, 697
EaeI	YGGCCR	2 cut(s)	96, 280
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	49
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	70
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	363, 388
Eco72I	CACGTG	1 cut(s)	206
Eco91I	GGTNACC	1 cut(s)	748
EcoO65I	GGTNACC	1 cut(s)	748
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	4 cut(s)	65, 199, 651, 710
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	4 cut(s)	61, 195, 647, 706
Fnu4HI	GCNGC	6 cut(s)	99, 273, 307, 459, 462, 580
FokI	GGATG	2 cut(s)	229, 676
Fsp4HI	GCNGC	6 cut(s)	99, 273, 307, 459, 462, 580
GluI	GCNGC	6 cut(s)	99, 273, 307, 459, 462, 580
HaeIII	GGCC	3 cut(s)	98, 282, 638
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	4 cut(s)	65, 199, 651, 710
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	434, 482, 717
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	4 cut(s)	62, 347, 383, 742
Hpy166II	GTNNAC	2 cut(s)	70, 178
Hpy188I	TCNGA	4 cut(s)	82, 358, 407, 598
Hpy188III	TCNNGA	2 cut(s)	566, 707
Hpy8I	GTNNAC	2 cut(s)	70, 178
HpyAV	CCTTC	2 cut(s)	87, 704
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	6 cut(s)	28, 400, 417, 512, 562, 651
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	4 cut(s)	65, 199, 651, 710
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	5 cut(s)	358, 373, 393, 407, 697
Lsp1109I	GCAGC	3 cut(s)	259, 293, 445
LweI	GCATC	3 cut(s)	176, 549, 571
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	228, 692, 748
MalI	GATC	5 cut(s)	360, 375, 395, 409, 699
MboI	GATC	5 cut(s)	358, 373, 393, 407, 697
MboII	GAAGA	5 cut(s)	342, 368, 485, 505, 629
MflI	RGATCY	2 cut(s)	393, 407
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	7 cut(s)	7, 83, 257, 262, 322, 501, 652
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	726
MnlI	CCTC	6 cut(s)	84, 293, 326, 583, 654, 697
Mox20I	TGGCCA	1 cut(s)	282
Mph1103I	ATGCAT	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	4 cut(s)	41, 177, 288, 537
MslI	CAYNNNNRTG	1 cut(s)	590
Msp20I	TGGCCA	1 cut(s)	282
MspI	CCGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	5 cut(s)	358, 373, 393, 407, 697
NlaIII	CATG	4 cut(s)	65, 199, 651, 710
NlaIV	GGNNCC	2 cut(s)	72, 395
NmuCI	GTSAC	2 cut(s)	228, 748
NsiI	ATGCAT	1 cut(s)	564
NspV	TTCGAA	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	590
PagI	TCATGA	1 cut(s)	706
PaqCI	CACCTGC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	434, 482
PkrI	GCNGC	6 cut(s)	100, 274, 308, 460, 463, 581
PleI	GAGTC	1 cut(s)	725
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	725
Ppu21I	YACGTR	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	206
PspEI	GGTNACC	1 cut(s)	748
PspN4I	GGNNCC	2 cut(s)	72, 395
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	393, 407
RsaI	GTAC	3 cut(s)	91, 149, 294
RsaNI	GTAC	3 cut(s)	90, 148, 293
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	4 cut(s)	41, 177, 288, 537
SatI	GCNGC	6 cut(s)	99, 273, 307, 459, 462, 580
Sau3AI	GATC	5 cut(s)	358, 373, 393, 407, 697
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	726
SfaNI	GCATC	3 cut(s)	176, 549, 571
SfuI	TTCGAA	1 cut(s)	527
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
Sse9I	AATT	7 cut(s)	7, 83, 257, 262, 322, 501, 652
SsiI	CCGC	3 cut(s)	99, 461, 579
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	298, 527
TasI	AATT	7 cut(s)	7, 83, 257, 262, 322, 501, 652
TauI	GCSGC	3 cut(s)	101, 464, 582
TfiI	GAWTC	2 cut(s)	434, 482
Tru1I	TTAA	4 cut(s)	41, 177, 288, 537
Tru9I	TTAA	4 cut(s)	41, 177, 288, 537
TseFI	GTSAC	2 cut(s)	228, 748
TseI	GCWGC	3 cut(s)	272, 306, 458
Tsp45I	GTSAC	2 cut(s)	228, 748
TspDTI	ATGAA	6 cut(s)	78, 630, 636, 680, 695, 723
TspGWI	ACGGA	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	7
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.