Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007351

Physical Location & Seq

Genomic Coordinates Forward (+)

21119842 .. 21123238

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1133200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGTTGCCATCCACTCCGCCGAACCTAAAGAACGAAAGAGAAGATGCGCTCATGGACTTTGATTTTGACCTCGACGTTTTGTGGCCGTTGGATCCGATTCACTTTCTCTCCTACCCCACGTCGCCGCTTTTGTTGCCGCCCAATGACCAGCCTTGTACCCCTTTGTGGGCTTTTTCCGACGGCGATGTCGAAAGTGACTATAAGCTCGCCGGGCATGTTGGTCAAGCTCTTTCTGACTGTTCTCAGTTTGTTTCATGTAATTCTAATTCCGTAACGGAAGGGTCAACAGAGACTGAGAGTAACAGAATGCTTCCATCACCATTTTCAGGACTGGAACCTCTTGAAAGTTCAGATGGTTATAGTTTATTTAACGAGAAGATCACTCAAGCACTCAGGTACCTCAAGGAATTGACTGACCAACCTGTTCTAGCCCAGTTTTGGGCACCAGTGAAGGATGGGAATCGGTATGTACTCACAACTTTAGGGCAGCCCTTTGTCCTTGATCCACAGTGTATCAGACTTCATCAGTATAGGATGGCCTGTTTGATGTATATGTTTTCCGTGGATGGGGAGAGTGATGGAGTTCTTGGGCTTCCTGGCCGCGTTTTCCAGCATAAATTGCCAGAATGGACTCCAAATGTTCAGTACTACTCCATTAAAGAGTATGCACGGCTTCGCCATGCTCAGCAATACAATGTTCAGGGAACCTTAGCTTTGCCCGTGTTTGAGCCCTCTGGAAGGTCTTGTGTTGGTGTACTTGAGCTCATAATGATTTCTCCTTTGATCAACTATGGTCCCGAGGTTGATAAGGTTTGCAAAGCACTTGAGGCAGTAGGCTTGAAAAGTTCAGAGATACTGGATCATCCAAGTAGGCAGATTCAAATATGCAATGAAGGTCGCCAAACTGCATTGGCTGAAATCTTGAAGATACTGATAGTGGTAAGTGAAACTCACAAATTACCACTTGCTCAGACGTGGGTTCCCTGTATGCATCGAAATGTTTTGGCTTATGACGGTGGCCTGAAGAAGAGCTGTACTAGCTTTGATGGCAGTTCCATGGAACAGGTCTGCATGTCCACAACTGATGTTGCATTCTACATTGTAGATGCTCATATGTGGCATTTTCGAGATGCCTGCGTTGAACATCACTTACACAAGGGTCAAGGAGTTGCTGGGAGGGCATTTTTGTCCCATAACGCATGCTTCTGCGAAGACATTACCCAATTCTGCAAATCTGAATACCCTGTAGCACACTACGCACGCATGTTTGGGCTAGCCGGCTCTTTTGCTATCTGCTTACAGAGCACTCATACTGGAAATGATGATTACATTCTAGAATTTTTTCTGCCCCCAAGCATCACAGACAGTCATGAACAACAAACTTTGTTGGGCTCTATATTGGCGATAATGAAGAACCATTTCCGGAGTCTCAGTGTTGCTTCTGGAATTGTACTTGAAGAGGAGGGAATAGTTGAAATTGTTCAAGCTTCTAAAAATAATGGGCTTGCCACAAGACTTCAATGTATACTGATACCCCGTTCAGTGGAATCACCACCAGGGCCTGCCTTACCTTACAGAGAAGAGATGGTGCAACTAGATTCATCAAAACCACAGTTAGTGGTGGGATATGATGTTGCAAATGATGGGAGAAATTATGTTCACGAGGGTGGAGAAAACAATATTTCTTTCCCAGAGAATAAAGACATAAAAAAGAAACCGGAGAAGAAGCGTGGAAAAGCAGAGAAATCAATTAGTCTAGACGTTCTCCAACAATATTTTGCAGGGAGTCTTAAGGATGCTGCAAAGAGTCTTGGAGTTTGTCCCACTACAATGAAGCGCATTTGCAGGCATCATGGAATCTCCCGCTGGCCATCTCGCAAGATCAAGAAGATCAACCATTCTCTCACTAAGCTACAGCGCGTAATTGAATCAGTTCACGGTGCTGAAGGAGCATTTGGTTTAACTCCTCTTACTGCAAGTGGCTCCATTTCTCGGCCTTGGATTTTAAATGGTTCTAATCAACAAGGCTCACCAAGCTCTAAACTTTGTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010118 GO:0010167 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042126 GO:0042128 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071941 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001057 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

686

Amino Acids

76.06

Weight (kDa)

5.98

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	294 - 477	1.6e-75	NLP protein GAF domain
RWP-RK	PF02042	583 - 631	1.8e-23	RWP-RK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64530 AT1G64530 AT4G24020 AT4G24020
fragaria_vesca	FvH4_5g11570 FvH4_5g11570
malus_domestica	MD06G1111900.v1.1 MD14G1133200.v1.1 MD14G1133300.v1.1
prunus_persica	Prupe.5G124900_v2.0.a1 Prupe.5G124900_v2.0.a1 Prupe.5G125000_v2.0.a1
pyrus_communis	pycom06g10490
rosa_chinensis	RchiOBHm_Chr7g0186181
rosa_laevigata	RLG00000004858
rosa_multiflora	Rmu_sc0009528.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268340
rosa_rugosa	Rorug06G0472600 Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068900 Rh7BG084800 Rh7CG079200 Rh7DG079400
rosa_wichuraiana	Rw7G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
Acc65I	GGTACC	1 cut(s)	396
AccB1I	GGYRCC	2 cut(s)	396, 442
AccI	GTMKAC	1 cut(s)	1525
AccII	CGCG	2 cut(s)	603, 1920
AccIII	TCCGGA	1 cut(s)	1422
AciI	CCGC	5 cut(s)	17, 125, 137, 601, 1864
AclWI	GGATC	4 cut(s)	86, 99, 497, 867
AcoI	YGGCCR	3 cut(s)	83, 598, 1868
AcsI	RAATTY	1 cut(s)	1337
AcuI	CTGAAG	2 cut(s)	1043, 1965
AfaI	GTAC	7 cut(s)	157, 398, 471, 647, 756, 1036, 1452
AfiI	CCNNNNNNNGG	9 cut(s)	165, 166, 326, 438, 439, 567, 738, 1543, 1992
AflII	CTTAAG	1 cut(s)	1790
AjiI	CACGTC	2 cut(s)	120, 975
AjnI	CCWGG	2 cut(s)	595, 1555
AjuI	GAANNNNNNNTTGG	2 cut(s)	1938, 1970
AleI	CACNNNNGTG	1 cut(s)	1665
AluBI	AGCT	9 cut(s)	205, 227, 713, 763, 1032, 1041, 1487, 1912, 2037
AluI	AGCT	9 cut(s)	205, 227, 713, 763, 1032, 1041, 1487, 1912, 2037
Alw21I	GWGCWC	2 cut(s)	765, 1307
Alw26I	GTCTC	2 cut(s)	284, 1433
AlwI	GGATC	4 cut(s)	86, 99, 497, 867
AlwNI	CAGNNNCTG	2 cut(s)	293, 1562
Ama87I	CYCGRG	1 cut(s)	797
Aor13HI	TCCGGA	1 cut(s)	1422
AoxI	GGCC	7 cut(s)	83, 537, 598, 1018, 1559, 1868, 1994
ApeKI	GCWGC	2 cut(s)	487, 1799
ApoI	RAATTY	1 cut(s)	1337
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	4 cut(s)	1341, 1418, 1479, 1932
Asp718I	GGTACC	1 cut(s)	396
AspLEI	GCGC	3 cut(s)	49, 1839, 1920
AspS9I	GGNCC	2 cut(s)	794, 1559
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	3 cut(s)	309, 1542, 2022
AsuNHI	GCTAGC	1 cut(s)	1273
AvaI	CYCGRG	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	794
BaeGI	GKGCMC	1 cut(s)	445
BaeI	ACNNNNGTAYC	2 cut(s)	380, 413
BalI	TGGCCA	1 cut(s)	1870
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	2 cut(s)	396, 442
BanII	GRGCYC	3 cut(s)	732, 765, 1394
BauI	CACGAG	1 cut(s)	1661
BbsI	GAAGAC	1 cut(s)	1218
Bbv12I	GWGCWC	2 cut(s)	765, 1307
BbvI	GCAGC	2 cut(s)	499, 1786
BceAI	ACGGC	3 cut(s)	70, 196, 686
BcgI	CGANNNNNNTGC	2 cut(s)	1116, 1150
BciT130I	CCWGG	2 cut(s)	597, 1557
BclI	TGATCA	1 cut(s)	783
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	284, 1433
BfaI	CTAG	6 cut(s)	428, 1038, 1274, 1334, 1595, 1757
BfmI	CTRYAG	2 cut(s)	1245, 1913
BfrI	CTTAAG	1 cut(s)	1790
BisI	GCNGC	5 cut(s)	125, 137, 488, 601, 1800
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	5 cut(s)	126, 138, 489, 602, 1801
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	3 cut(s)	211, 597, 1557
Bme18I	GGWCC	1 cut(s)	794
BmeT110I	CYCGRG	1 cut(s)	797
BmgBI	CACGTC	2 cut(s)	120, 975
BmgT120I	GGNCC	2 cut(s)	794, 1559
BmiI	GGNNCC	8 cut(s)	93, 336, 398, 444, 706, 796, 981, 1984
BmrFI	CCNGG	3 cut(s)	211, 597, 1557
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	7 cut(s)	34, 1000, 1096, 1120, 1365, 1786, 1858
BmtI	GCTAGC	1 cut(s)	1277
BmuI	ACTGGG	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	1218
Bpu10I	CCTNAGC	1 cut(s)	709
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	4 cut(s)	369, 386, 779, 845
BpuMI	CCSGG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	5 cut(s)	561, 798, 1056, 1556, 1997
BsaWI	WCCGGW	2 cut(s)	1422, 1717
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 1417, 1447
Bsc4I	CCNNNNNNNGG	9 cut(s)	165, 166, 326, 438, 439, 567, 738, 1543, 1992
Bse118I	RCCGGY	1 cut(s)	1277
Bse1I	ACTGG	5 cut(s)	336, 433, 446, 861, 1318
Bse3DI	GCAATG	1 cut(s)	895
Bse8I	GATNNNNATC	1 cut(s)	459
BseAI	TCCGGA	1 cut(s)	1422
BseBI	CCWGG	2 cut(s)	597, 1557
BseDI	CCNNGG	5 cut(s)	561, 798, 1056, 1556, 1997
BseGI	GGATG	6 cut(s)	8, 460, 540, 571, 862, 1801
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	9 cut(s)	165, 166, 326, 438, 439, 567, 738, 1543, 1992
BseMI	GCAATG	1 cut(s)	895
BseMII	CTCAG	6 cut(s)	257, 285, 406, 698, 983, 1444
BseNI	ACTGG	5 cut(s)	336, 433, 446, 861, 1318
BseRI	GAGGAG	2 cut(s)	1475, 1956
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	499, 1786
BseYI	CCCAGC	1 cut(s)	1172
Bsh1236I	CGCG	2 cut(s)	603, 1920
BshFI	GGCC	7 cut(s)	85, 539, 600, 1020, 1561, 1870, 1996
BshNI	GGYRCC	2 cut(s)	396, 442
BsiHKAI	GWGCWC	2 cut(s)	765, 1307
BsiHKCI	CYCGRG	1 cut(s)	797
BsiSI	CCGG	4 cut(s)	210, 1278, 1423, 1718
BslFI	GGGAC	3 cut(s)	780, 1174, 1806
BslI	CCNNNNNNNGG	9 cut(s)	165, 166, 326, 438, 439, 567, 738, 1543, 1992
BsmAI	GTCTC	2 cut(s)	284, 1433
BsmFI	GGGAC	3 cut(s)	780, 1174, 1806
BsmI	GAATGC	2 cut(s)	312, 1091
BsnI	GGCC	7 cut(s)	85, 539, 600, 1020, 1561, 1870, 1996
BsoBI	CYCGRG	1 cut(s)	797
Bsp1286I	GDGCHC	5 cut(s)	445, 732, 765, 1307, 1394
Bsp13I	TCCGGA	1 cut(s)	1422
Bsp143I	GATC	7 cut(s)	91, 378, 502, 783, 859, 1881, 1890
Bsp1720I	GCTNAGC	1 cut(s)	684
Bsp19I	CCATGG	1 cut(s)	1056
BspACI	CCGC	5 cut(s)	17, 125, 137, 601, 1864
BspANI	GGCC	7 cut(s)	85, 539, 600, 1020, 1561, 1870, 1996
BspCNI	CTCAG	6 cut(s)	256, 286, 405, 697, 982, 1443
BspEI	TCCGGA	1 cut(s)	1422
BspFNI	CGCG	2 cut(s)	603, 1920
BspHI	TCATGA	1 cut(s)	1369
BspLI	GGNNCC	8 cut(s)	93, 336, 398, 444, 706, 796, 981, 1984
BspOI	GCTAGC	1 cut(s)	1277
BspPI	GGATC	4 cut(s)	86, 99, 497, 867
BspQI	GCTCTTC	1 cut(s)	1022
BspT107I	GGYRCC	2 cut(s)	396, 442
BspTI	CTTAAG	1 cut(s)	1790
BsrDI	GCAATG	1 cut(s)	895
BsrFI	RCCGGY	1 cut(s)	1277
BsrI	ACTGG	5 cut(s)	336, 433, 446, 861, 1318
BssAI	RCCGGY	1 cut(s)	1277
BssECI	CCNNGG	5 cut(s)	561, 798, 1056, 1556, 1997
BssMI	GATC	7 cut(s)	91, 378, 502, 783, 859, 1881, 1890
BssNAI	GTATAC	1 cut(s)	1526
BssSI	CACGAG	1 cut(s)	1661
BssT1I	CCWWGG	2 cut(s)	1056, 1997
Bst1107I	GTATAC	1 cut(s)	1526
Bst2BI	CACGAG	1 cut(s)	1661
Bst2UI	CCWGG	2 cut(s)	597, 1557
Bst4CI	ACNGT	6 cut(s)	239, 510, 1016, 1367, 1614, 1940
Bst6I	CTCTTC	3 cut(s)	1022, 1452, 1575
BstAFI	CTTAAG	1 cut(s)	1790
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstDEI	CTNAG	8 cut(s)	243, 294, 392, 684, 709, 969, 1430, 1908
BstDSI	CCRYGG	2 cut(s)	561, 1056
BstENI	CCTNNNNNAGG	1 cut(s)	736
BstF5I	GGATG	6 cut(s)	8, 460, 540, 571, 862, 1801
BstFNI	CGCG	2 cut(s)	603, 1920
BstHHI	GCGC	3 cut(s)	49, 1839, 1920
BstKTI	GATC	7 cut(s)	94, 381, 505, 786, 862, 1884, 1893
BstMAI	GTCTC	2 cut(s)	284, 1433
BstMBI	GATC	7 cut(s)	91, 378, 502, 783, 859, 1881, 1890
BstNI	CCWGG	2 cut(s)	597, 1557
BstNSI	RCATGY	4 cut(s)	218, 1075, 1203, 1267
BstSCI	CCNGG	3 cut(s)	209, 595, 1555
BstSFI	CTRYAG	2 cut(s)	1245, 1913
BstSLI	GKGCMC	1 cut(s)	445
BstUI	CGCG	2 cut(s)	603, 1920
BstV1I	GCAGC	2 cut(s)	499, 1786
BstV2I	GAAGAC	1 cut(s)	1218
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BstZ17I	GTATAC	1 cut(s)	1526
BsuRI	GGCC	7 cut(s)	85, 539, 600, 1020, 1561, 1870, 1996
BtgI	CCRYGG	2 cut(s)	561, 1056
BtgZI	GCGATG	1 cut(s)	198
BtrI	CACGTC	2 cut(s)	120, 975
BtsCI	GGATG	6 cut(s)	8, 460, 540, 571, 862, 1801
BtsIMutI	CAGTG	4 cut(s)	453, 515, 1438, 1548
CaiI	CAGNNNCTG	2 cut(s)	293, 1562
CciI	TCATGA	1 cut(s)	1369
CfoI	GCGC	3 cut(s)	49, 1839, 1920
Cfr10I	RCCGGY	1 cut(s)	1277
Cfr13I	GGNCC	2 cut(s)	794, 1559
Csp6I	GTAC	7 cut(s)	156, 397, 470, 646, 755, 1035, 1451
CviQI	GTAC	7 cut(s)	156, 397, 470, 646, 755, 1035, 1451
DdeI	CTNAG	8 cut(s)	243, 294, 392, 684, 709, 969, 1430, 1908
DpnI	GATC	7 cut(s)	93, 380, 504, 785, 861, 1883, 1892
DpnII	GATC	7 cut(s)	91, 378, 502, 783, 859, 1881, 1890
DraI	TTTAAA	1 cut(s)	2007
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	3 cut(s)	83, 598, 1868
Eam1104I	CTCTTC	3 cut(s)	1022, 1452, 1575
EarI	CTCTTC	3 cut(s)	1022, 1452, 1575
EciI	GGCGGA	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	763
Eco130I	CCWWGG	2 cut(s)	1056, 1997
Eco24I	GRGCYC	3 cut(s)	732, 765, 1394
Eco47I	GGWCC	1 cut(s)	794
Eco53kI	GAGCTC	1 cut(s)	763
Eco57I	CTGAAG	2 cut(s)	1043, 1965
Eco88I	CYCGRG	1 cut(s)	797
EcoICRI	GAGCTC	1 cut(s)	763
EcoNI	CCTNNNNNAGG	1 cut(s)	736
EcoO109I	RGGNCCY	1 cut(s)	1559
EcoRII	CCWGG	2 cut(s)	595, 1555
EcoT14I	CCWWGG	2 cut(s)	1056, 1997
EcoT22I	ATGCAT	1 cut(s)	993
EcoT38I	GRGCYC	3 cut(s)	732, 765, 1394
ErhI	CCWWGG	2 cut(s)	1056, 1997
FaqI	GGGAC	3 cut(s)	780, 1174, 1806
FauI	CCCGC	1 cut(s)	1871
FauNDI	CATATG	1 cut(s)	1113
FbaI	TGATCA	1 cut(s)	783
FblI	GTMKAC	1 cut(s)	1525
Fnu4HI	GCNGC	5 cut(s)	125, 137, 488, 601, 1800
FokI	GGATG	5 cut(s)	467, 547, 578, 849, 1808
FriOI	GRGCYC	3 cut(s)	732, 765, 1394
Fsp4HI	GCNGC	5 cut(s)	125, 137, 488, 601, 1800
FspBI	CTAG	6 cut(s)	428, 1038, 1274, 1334, 1595, 1757
GlaI	GCGC	3 cut(s)	48, 1838, 1919
GluI	GCNGC	5 cut(s)	125, 137, 488, 601, 1800
GsaI	CCCAGC	1 cut(s)	1176
HaeIII	GGCC	7 cut(s)	85, 539, 600, 1020, 1561, 1870, 1996
HapII	CCGG	4 cut(s)	210, 1278, 1423, 1718
HhaI	GCGC	3 cut(s)	49, 1839, 1920
Hin6I	GCGC	3 cut(s)	47, 1837, 1918
HinP1I	GCGC	3 cut(s)	47, 1837, 1918
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	1485
HpaII	CCGG	4 cut(s)	210, 1278, 1423, 1718
HphI	GGTGA	3 cut(s)	309, 1542, 2022
Hpy166II	GTNNAC	6 cut(s)	285, 755, 1077, 1526, 1660, 1936
Hpy188I	TCNGA	8 cut(s)	96, 178, 235, 352, 518, 850, 972, 1237
Hpy8I	GTNNAC	6 cut(s)	285, 755, 1077, 1526, 1660, 1936
Hpy99I	CGWCG	3 cut(s)	77, 124, 182
HpyAV	CCTTC	5 cut(s)	272, 445, 732, 887, 1940
HpyCH4III	ACNGT	6 cut(s)	239, 510, 1016, 1367, 1614, 1940
HpyCH4IV	ACGT	4 cut(s)	75, 119, 974, 1761
HpyF3I	CTNAG	8 cut(s)	243, 294, 392, 684, 709, 969, 1430, 1908
HpySE526I	ACGT	4 cut(s)	75, 119, 974, 1761
HspAI	GCGC	3 cut(s)	47, 1837, 1918
Kpn2I	TCCGGA	1 cut(s)	1422
KpnI	GGTACC	1 cut(s)	400
KroI	GCCGGC	1 cut(s)	1277
KroNI	GCCGGC	1 cut(s)	1279
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	7 cut(s)	91, 378, 502, 783, 859, 1881, 1890
LguI	GCTCTTC	1 cut(s)	1022
LmnI	GCTCC	2 cut(s)	1949, 1988
Lsp1109I	GCAGC	2 cut(s)	499, 1786
LweI	GCATC	7 cut(s)	34, 1000, 1096, 1120, 1365, 1786, 1858
MaeI	CTAG	6 cut(s)	428, 1038, 1274, 1334, 1595, 1757
MaeII	ACGT	4 cut(s)	75, 119, 974, 1761
MaeIII	GTNAC	3 cut(s)	194, 271, 299
MalI	GATC	7 cut(s)	93, 380, 504, 785, 861, 1883, 1892
MboI	GATC	7 cut(s)	91, 378, 502, 783, 859, 1881, 1890
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	5 cut(s)	445, 732, 765, 1307, 1394
MlsI	TGGCCA	1 cut(s)	1870
MluNI	TGGCCA	1 cut(s)	1870
MlyI	GAGTC	4 cut(s)	625, 1435, 1795, 1816
MmeI	TCCRAC	3 cut(s)	69, 201, 1792
Mox20I	TGGCCA	1 cut(s)	1870
Mph1103I	ATGCAT	1 cut(s)	993
MroI	TCCGGA	1 cut(s)	1422
MroNI	GCCGGC	1 cut(s)	1277
MroXI	GAANNNNTTC	4 cut(s)	1341, 1418, 1479, 1932
MscI	TGGCCA	1 cut(s)	1870
MseI	TTAA	6 cut(s)	369, 657, 1791, 1961, 2006, 2056
MslI	CAYNNNNRTG	3 cut(s)	996, 1665, 1829
Msp20I	TGGCCA	1 cut(s)	1870
MspA1I	CMGCKG	1 cut(s)	1866
MspCI	CTTAAG	1 cut(s)	1790
MspI	CCGG	4 cut(s)	210, 1278, 1423, 1718
MspR9I	CCNGG	3 cut(s)	211, 597, 1557
Mva1269I	GAATGC	2 cut(s)	312, 1091
MvaI	CCWGG	2 cut(s)	597, 1557
MvnI	CGCG	2 cut(s)	603, 1920
NaeI	GCCGGC	1 cut(s)	1279
NciI	CCSGG	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	1056
NdeI	CATATG	1 cut(s)	1113
NdeII	GATC	7 cut(s)	91, 378, 502, 783, 859, 1881, 1890
NgoMIV	GCCGGC	1 cut(s)	1277
NheI	GCTAGC	1 cut(s)	1273
NlaIV	GGNNCC	8 cut(s)	93, 336, 398, 444, 706, 796, 981, 1984
NmeAIII	GCCGAG	1 cut(s)	1972
NmuCI	GTSAC	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	993
NspI	RCATGY	4 cut(s)	218, 1075, 1203, 1267
OliI	CACNNNNGTG	1 cut(s)	1665
PaeI	GCATGC	1 cut(s)	1203
PagI	TCATGA	1 cut(s)	1369
PciSI	GCTCTTC	1 cut(s)	1022
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	2 cut(s)	312, 1091
PdiI	GCCGGC	1 cut(s)	1279
PdmI	GAANNNNTTC	4 cut(s)	1341, 1418, 1479, 1932
PfeI	GAWTC	7 cut(s)	97, 460, 877, 1547, 1598, 1857, 1928
PkrI	GCNGC	5 cut(s)	126, 138, 489, 602, 1801
PleI	GAGTC	4 cut(s)	625, 1434, 1794, 1815
PpsI	GAGTC	4 cut(s)	625, 1434, 1794, 1815
Psp124BI	GAGCTC	1 cut(s)	765
Psp6I	CCWGG	2 cut(s)	595, 1555
PspFI	CCCAGC	1 cut(s)	1172
PspGI	CCWGG	2 cut(s)	595, 1555
PspN4I	GGNNCC	8 cut(s)	93, 336, 398, 444, 706, 796, 981, 1984
PspPI	GGNCC	2 cut(s)	794, 1559
PsrI	GAACNNNNNNTAC	2 cut(s)	1134, 1166
PstNI	CAGNNNCTG	2 cut(s)	293, 1562
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	7 cut(s)	157, 398, 471, 647, 756, 1036, 1452
RsaNI	GTAC	7 cut(s)	156, 397, 470, 646, 755, 1035, 1451
RseI	CAYNNNNRTG	3 cut(s)	996, 1665, 1829
SacI	GAGCTC	1 cut(s)	765
SapI	GCTCTTC	1 cut(s)	1022
SaqAI	TTAA	6 cut(s)	369, 657, 1791, 1961, 2006, 2056
SatI	GCNGC	5 cut(s)	125, 137, 488, 601, 1800
Sau3AI	GATC	7 cut(s)	91, 378, 502, 783, 859, 1881, 1890
Sau96I	GGNCC	2 cut(s)	794, 1559
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	4 cut(s)	625, 1435, 1795, 1816
ScrFI	CCNGG	3 cut(s)	211, 597, 1557
SduI	GDGCHC	5 cut(s)	445, 732, 765, 1307, 1394
SfaNI	GCATC	7 cut(s)	34, 1000, 1096, 1120, 1365, 1786, 1858
SfcI	CTRYAG	2 cut(s)	1245, 1913
SinI	GGWCC	1 cut(s)	794
SmiMI	CAYNNNNRTG	3 cut(s)	996, 1665, 1829
SmlI	CTYRAG	5 cut(s)	384, 401, 758, 824, 1790
SmoI	CTYRAG	5 cut(s)	384, 401, 758, 824, 1790
SphI	GCATGC	1 cut(s)	1203
SsiI	CCGC	5 cut(s)	17, 125, 137, 601, 1864
SspI	AATATT	2 cut(s)	1681, 1775
SspMI	CTAG	6 cut(s)	428, 1038, 1274, 1334, 1595, 1757
SstI	GAGCTC	1 cut(s)	765
StyD4I	CCNGG	3 cut(s)	209, 595, 1555
StyI	CCWWGG	2 cut(s)	1056, 1997
TaaI	ACNGT	6 cut(s)	239, 510, 1016, 1367, 1614, 1940
TaiI	ACGT	4 cut(s)	78, 122, 977, 1764
TaqI	TCGA	4 cut(s)	72, 189, 994, 1126
TatI	WGTACW	5 cut(s)	469, 645, 754, 1034, 1450
TauI	GCSGC	3 cut(s)	127, 139, 603
TfiI	GAWTC	7 cut(s)	97, 460, 877, 1547, 1598, 1857, 1928
Tru1I	TTAA	6 cut(s)	369, 657, 1791, 1961, 2006, 2056
Tru9I	TTAA	6 cut(s)	369, 657, 1791, 1961, 2006, 2056
TscAI	CASTG	4 cut(s)	453, 515, 1438, 1548
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	487, 1799
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	7 cut(s)	243, 512, 906, 1386, 1424, 1590, 1847
TspGWI	ACGGA	3 cut(s)	259, 290, 550
TspRI	CASTG	4 cut(s)	453, 515, 1438, 1548
Vha464I	CTTAAG	1 cut(s)	1790
VpaK11BI	GGWCC	1 cut(s)	794
XagI	CCTNNNNNAGG	1 cut(s)	736
XapI	RAATTY	1 cut(s)	1337
XbaI	TCTAGA	2 cut(s)	1333, 1756
XceI	RCATGY	4 cut(s)	218, 1075, 1203, 1267
XmiI	GTMKAC	1 cut(s)	1525
XmnI	GAANNNNTTC	4 cut(s)	1341, 1418, 1479, 1932
XspI	CTAG	6 cut(s)	428, 1038, 1274, 1334, 1595, 1757
ZrmI	AGTACT	1 cut(s)	647
Zsp2I	ATGCAT	1 cut(s)	993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.