Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007351

Physical Location & Seq

Genomic Coordinates Reverse (-)

6169739 .. 6173806

Gene Structure 4068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG084800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2856 bp

ATGTCCGACCCCGAAGAGGACCGAGCTCCCGCCATTTTCCCCAAGTCAAAGAACCTGGACGCCATGGACTTTGATATCGACGTTTCCTGGCCCTTGGATCAGATCCAGTTTCTCTCTAATCCCACCTCCCCGCTTCTCTTCTCCCCCGCCGACGACCCCTGTTCTCCTCTCTGGGCCTTTCCCGATGTCAATCATGACAACCTCGCCGGCGGAGGCCGAGCTCTTCCCGACCCGGCTCAATTCGTTTCCGATGCTAATCCGGTTGTGGAGAAGCCAAGAGAGAATGAGGACAACAGAATGCTTCCATCCCCATTTTTGGGACTGGACCCAAATCCAGATGGTTATTTTCTAATTAAGGAGAGAATCACTCAAGCATTGCGGTACCTCAAGGAGTCGAGTGATCAACATGTACTAGCTCAGGTTTGGGCACCGGTGAAGGATGGAAGTCGGTATGTACTCACAACCTCAGGGCAACCCTTTGTGCTGGATCCACATGATGGACTTCATCAGTATAGGATGGTTTCTCTGATGTATATGTTTTCTGTGGATGGGGAGAATGATGGAGTGCTTGGACTTCCTGGCCGTGTTTTCCAGCAAAAGATGCCCGAATGGACTCCAAATGTTCAGTACTACTCCATCAAAGAGTATCCACGACTTGATCATGCTCAGCACTACAATGTTCAGGGAACCTTAGCTTTGCCCATATTTGAACCCTCTGGGCGGTCCTGTATTGGTGTAATTGAGCTCATAATGACTTCTCAGAAGATCAACTATGCTCCTGAGGTTGATAAAATTTGCAAAGCACTTGAGGCAGTAAGCTTGAAAAGTTCAGATATATTGGATCATACAAGCACACAGATCCAGATACGCAATGAAGGTCGCCAAAATGCATTAACTGAAATCTTGGAGATACTGACAATGGTATGTGAAACTCATAAATTACCACTGGCTCAGACATGGGTTCCATGTATGCATCGCAATGTTTTGGCTTATGGTGGTGGCATGAAGAAGAGCTGTACAAGCTTTGATGGTAGCTGCATGGAACAGGTCTGCATGTCCACAACAGATGTGGCAGTCTACATTGTAGATGCTCACATGTGGGGTTTTCGAGAGGCCTGTGTGGAGCATCACTTACAAAAGGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCGTAATGCATGCTTCTGCAGAGACATTAGCCAGTTCCGCAAAACAGAATACCCTTTAGTACACTACGCACGCATGTTTGGGTTAACCAGCTCATTTGCAATCTGTTTACAGAGCACTCACACTGGAAATGATGATTACATTCTAGAATTTTTTCTGCCGCCTAGCATCAGAGACAGTTGTGAACAGCAGACTTTATTGGGCTCCATATTGGCTATAGTGAAAGATCATTGCCAGAATCTTAAGGTTGCTTCTGGAATTGGACTTGCAGAGGAAGGAACAGTTGAGATTGTTCAAGCTTCTATAAATGAGGGACTTGACTCAAGACTTGAATGCATACAGATACCCTGTTCCGTGGAGCCACTTCCAGGGTCTTCCTTACCTAACAGAGAAGAGATGGTGCGCCTAAATCCAGCAAAACCACAGTTAATGGTGGACATTGATGCTATTAATGATGAGAGGAATGCAGTTCACAACGGTGGAAAAAACAACATTTCTGTTCCCGAGAATAAAGACATAAAAAAGACATCAGAGAGGAAGCGTGGGAAAACTGAGAAATCAATTAGTCTAGAGGTTCTTCAACAATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGAATCTCCCGCTGGCCATCTCGCAAGATCAACAAGGTCAACCGTTCTCTCAGTAAGCTAAAGCTTGTAATTGAATCTGTCCAAGGTGGTGAAGGAGCATTTGGTTTGAGTCCTCTTACTACAAGTCCACTTACTGGTGCTGTTGGCTCCATTTCTCGACCTTATACAAGCTCTCAACCCTATGAAGTTCAGGGAGAAAAGAAAGATTCACCCAGCTCTAGTACACCAGGAAGAGAGGGACAGGCTGGGATAGAAGATCCATTGCAAGATATTGGTAATGGCTCAAACTCATCCAAAACAGGTAGTGGCTCAAGGGAGGCGAGTACTGGTACCCCTACTTCTCATGGTTCATGCCTAGGTAGTCCGGCAAATGGAAGTGCAATGGTAGACCCCTTTGTTTCTTCCATCCATGAGCAATTCGTTGAAGTTGATCGAGCCCCTGAATCAGCATTTCGACCACCAGAGGAACTGTATGTACCAGTTCCGTGCACAATACCAGATGCTCTCCTCATGACAGAACCTGAAGAACCATCTAGAGGAATGCTACTAGAGGATGCTGGAAGTTCAAAAGACTTGAGAAATCTGTGTCCTTTTACCGATATAACTGTGCATGAGCAAGTTCCAGAAGTTTTCTGGACAGACCCCCCATGTCCTGATTCGGCTCCTAACCAATCCATGTCTACTCTTGCTTACACAATGCCTCATAACACATCTTTACAAGAAATGAGGAGTGTAACCATAAAGGCAGCATATAAAGATGATATCATTAGGTTTCGGATCTCTATGAGTTCTTGTATAGTGGATTTGAAAGAGGAAGTGGCAAAGAGATTAAAGTTGGAAGTGGGCACATTTGATATGAAGTATATGGATGATGACCTTGAGTGGGTTCTGATAGCTTGTGATGCAGACCTGCAGGAATGCATGGAAATTTGCAGATCATCAGGCAGCAATATGATCAGACTCTCTGTTCATGACATTCTGTCCAATCTTGGAAGCTCTTCTGAGAGCACTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010118 GO:0010167 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042126 GO:0042128 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071941 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001057 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

951

Amino Acids

104.93

Weight (kDa)

5.09

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	137 - 271	8.4e-06	NLP protein GAF domain
GAF_NLP	PF22922	289 - 471	4.9e-78	NLP protein GAF domain
RWP-RK	PF02042	577 - 624	2.1e-23	RWP-RK domain
PB1	PF00564	857 - 937	1.5e-20	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64530 AT1G64530 AT4G24020 AT4G24020
fragaria_vesca	FvH4_5g11570 FvH4_5g11570
malus_domestica	MD06G1111900.v1.1 MD14G1133200.v1.1 MD14G1133300.v1.1
prunus_persica	Prupe.5G124900_v2.0.a1 Prupe.5G124900_v2.0.a1 Prupe.5G125000_v2.0.a1
pyrus_communis	pycom06g10490
rosa_chinensis	RchiOBHm_Chr7g0186181
rosa_laevigata	RLG00000004858
rosa_multiflora	Rmu_sc0009528.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268340
rosa_rugosa	Rorug06G0472600 Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068900 Rh7BG084800 Rh7CG079200 Rh7DG079400
rosa_wichuraiana	Rw7G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2754
Acc65I	GGTACC	2 cut(s)	381, 2165
AccB1I	GGYRCC	3 cut(s)	381, 427, 2165
AccB7I	CCANNNNNTGG	2 cut(s)	497, 1970
AccI	GTMKAC	3 cut(s)	1077, 2223, 2516
AciI	CCGC	9 cut(s)	30, 131, 147, 210, 379, 721, 1210, 1331, 1846
AclWI	GGATC	8 cut(s)	97, 105, 482, 495, 849, 853, 2087, 2621
AcoI	YGGCCR	2 cut(s)	580, 1850
AcsI	RAATTY	3 cut(s)	792, 1319, 2763
AcuI	CTGAAG	1 cut(s)	2379
AcyI	GRCGYC	1 cut(s)	60
AflII	CTTAAG	1 cut(s)	1412
AflIII	ACRYGT	2 cut(s)	406, 1095
AgeI	ACCGGT	1 cut(s)	430
AgsI	TTSAA	9 cut(s)	710, 823, 1466, 1502, 1751, 1910, 2261, 2403, 2644
AhdI	GACNNNNNGTC	1 cut(s)	2815
AjnI	CCWGG	5 cut(s)	54, 86, 577, 1537, 2062
AjuI	GAANNNNNNNTTGG	2 cut(s)	1920, 1952
AleI	CACNNNNGTG	1 cut(s)	1647
Alw21I	GWGCWC	6 cut(s)	28, 223, 747, 1289, 2327, 2846
Alw26I	GTCTC	2 cut(s)	1188, 1338
Alw44I	GTGCAC	1 cut(s)	2323
AlwI	GGATC	8 cut(s)	97, 105, 482, 495, 849, 853, 2087, 2621
AlwNI	CAGNNNCTG	1 cut(s)	2357
Ama87I	CYCGRG	1 cut(s)	1673
AoxI	GGCC	6 cut(s)	89, 174, 214, 580, 1113, 1850
ApaLI	GTGCAC	1 cut(s)	2323
ApeKI	GCWGC	5 cut(s)	1035, 1781, 1831, 2582, 2781
ApoI	RAATTY	3 cut(s)	792, 1319, 2763
AseI	ATTAAT	1 cut(s)	1620
AsiGI	ACCGGT	1 cut(s)	430
Asp700I	GAANNNNTTC	2 cut(s)	1323, 2833
Asp718I	GGTACC	2 cut(s)	381, 2165
AspA2I	CCTAGG	1 cut(s)	2191
AspLEI	GCGC	2 cut(s)	1575, 1821
AspS9I	GGNCC	5 cut(s)	19, 90, 174, 325, 723
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	445, 1937, 2037
AvaI	CYCGRG	1 cut(s)	1673
AvaII	GGWCC	3 cut(s)	19, 325, 723
AvrII	CCTAGG	1 cut(s)	2191
AxyI	CCTNAGG	2 cut(s)	466, 780
BaeGI	GKGCMC	3 cut(s)	430, 2327, 2684
BalI	TGGCCA	1 cut(s)	1852
BamHI	GGATCC	1 cut(s)	487
BanI	GGYRCC	3 cut(s)	381, 427, 2165
BanII	GRGCYC	5 cut(s)	28, 223, 747, 1376, 2275
BarI	GAAGNNNNNNTAC	2 cut(s)	2158, 2190
BbsI	GAAGAC	1 cut(s)	1536
Bbv12I	GWGCWC	6 cut(s)	28, 223, 747, 1289, 2327, 2846
BbvI	GCAGC	5 cut(s)	1022, 1768, 1843, 2594, 2793
BceAI	ACGGC	1 cut(s)	567
BciT130I	CCWGG	5 cut(s)	56, 88, 579, 1539, 2064
BciVI	GTATCC	1 cut(s)	657
BclI	TGATCA	3 cut(s)	400, 658, 2790
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	1188, 1338
BfaI	CTAG	8 cut(s)	413, 1316, 1335, 1739, 2055, 2192, 2370, 2384
BfmI	CTRYAG	4 cut(s)	1189, 1386, 1825, 2747
BfrI	CTTAAG	1 cut(s)	1412
BfuAI	ACCTGC	1 cut(s)	2754
BfuI	GTATCC	1 cut(s)	657
BisI	GCNGC	6 cut(s)	1036, 1331, 1782, 1832, 2583, 2782
BlnI	CCTAGG	1 cut(s)	2191
BlpI	GCTNAGC	1 cut(s)	666
BlsI	GCNGC	6 cut(s)	1037, 1332, 1783, 1833, 2584, 2783
BmcAI	AGTACT	2 cut(s)	629, 2161
Bme1390I	CCNGG	6 cut(s)	56, 88, 233, 579, 1539, 2064
Bme18I	GGWCC	3 cut(s)	19, 325, 723
BmeRI	GACNNNNNGTC	1 cut(s)	2815
BmeT110I	CYCGRG	1 cut(s)	1673
BmgT120I	GGNCC	5 cut(s)	19, 90, 174, 325, 723
BmrFI	CCNGG	6 cut(s)	56, 88, 233, 579, 1539, 2064
BpiI	GAAGAC	1 cut(s)	1536
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
Bpu10I	CCTNAGC	2 cut(s)	417, 691
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	7 cut(s)	354, 371, 827, 1477, 2131, 2431, 2735
BpuMI	CCSGG	1 cut(s)	233
BsaBI	GATNNNNATC	2 cut(s)	189, 255
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	7 cut(s)	63, 93, 1524, 1538, 1792, 1918, 2191
BsaWI	WCCGGW	2 cut(s)	259, 430
Bse118I	RCCGGY	2 cut(s)	206, 430
Bse1I	ACTGG	8 cut(s)	106, 327, 951, 1204, 1300, 1975, 2167, 2315
Bse21I	CCTNAGG	2 cut(s)	466, 780
Bse3DI	GCAATG	6 cut(s)	374, 877, 985, 1399, 2096, 2223
Bse8I	GATNNNNATC	2 cut(s)	189, 255
BseBI	CCWGG	5 cut(s)	56, 88, 579, 1539, 2064
BseDI	CCNNGG	7 cut(s)	63, 93, 1524, 1538, 1792, 1918, 2191
BseGI	GGATG	8 cut(s)	305, 445, 522, 553, 2126, 2241, 2395, 2710
BseJI	GATNNNNATC	2 cut(s)	189, 255
BseMI	GCAATG	6 cut(s)	374, 877, 985, 1399, 2096, 2223
BseNI	ACTGG	8 cut(s)	106, 327, 951, 1204, 1300, 1975, 2167, 2315
BseRI	GAGGAG	3 cut(s)	156, 2333, 2578
BseSI	GKGCMC	3 cut(s)	430, 2327, 2684
BseXI	GCAGC	5 cut(s)	1022, 1768, 1843, 2594, 2793
BseYI	CCCAGC	4 cut(s)	1154, 1763, 2048, 2081
BshFI	GGCC	6 cut(s)	91, 176, 216, 582, 1115, 1852
BshNI	GGYRCC	3 cut(s)	381, 427, 2165
BshTI	ACCGGT	1 cut(s)	430
BsiHKAI	GWGCWC	6 cut(s)	28, 223, 747, 1289, 2327, 2846
BsiHKCI	CYCGRG	1 cut(s)	1673
BsiSI	CCGG	5 cut(s)	207, 233, 260, 431, 2201
BslFI	GGGAC	4 cut(s)	333, 1156, 1497, 2088
BsmAI	GTCTC	2 cut(s)	1188, 1338
BsmFI	GGGAC	4 cut(s)	333, 1156, 1497, 2088
BsmI	GAATGC	5 cut(s)	303, 1508, 1639, 2382, 2759
BsnI	GGCC	6 cut(s)	91, 176, 216, 582, 1115, 1852
BsoBI	CYCGRG	1 cut(s)	1673
Bsp1407I	TGTACA	1 cut(s)	1016
Bsp1720I	GCTNAGC	1 cut(s)	666
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	9 cut(s)	30, 131, 147, 210, 379, 721, 1210, 1331, 1846
BspANI	GGCC	6 cut(s)	91, 176, 216, 582, 1115, 1852
BspHI	TCATGA	3 cut(s)	193, 2346, 2806
BspMAI	CTGCAG	2 cut(s)	1193, 2751
BspMI	ACCTGC	1 cut(s)	2754
BspPI	GGATC	8 cut(s)	97, 105, 482, 495, 849, 853, 2087, 2621
BspQI	GCTCTTC	3 cut(s)	228, 1004, 2839
BspT107I	GGYRCC	3 cut(s)	381, 427, 2165
BspTI	CTTAAG	1 cut(s)	1412
BsrDI	GCAATG	6 cut(s)	374, 877, 985, 1399, 2096, 2223
BsrFI	RCCGGY	2 cut(s)	206, 430
BsrGI	TGTACA	1 cut(s)	1016
BsrI	ACTGG	8 cut(s)	106, 327, 951, 1204, 1300, 1975, 2167, 2315
BssAI	RCCGGY	2 cut(s)	206, 430
BssECI	CCNNGG	7 cut(s)	63, 93, 1524, 1538, 1792, 1918, 2191
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2191
Bst2UI	CCWGG	5 cut(s)	56, 88, 579, 1539, 2064
Bst4CI	ACNGT	7 cut(s)	1349, 1453, 1596, 1649, 1880, 2307, 2443
Bst6I	CTCTTC	7 cut(s)	9, 143, 228, 1004, 1557, 2062, 2839
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	1412
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstAUI	TGTACA	1 cut(s)	1016
BstC8I	GCNNGC	4 cut(s)	208, 1183, 1243, 1850
BstDSI	CCRYGG	2 cut(s)	63, 1524
BstF5I	GGATG	8 cut(s)	305, 445, 522, 553, 2126, 2241, 2395, 2710
BstHHI	GCGC	2 cut(s)	1575, 1821
BstMAI	GTCTC	2 cut(s)	1188, 1338
BstMWI	GCNNNNNNNGC	6 cut(s)	601, 809, 1020, 1160, 1209, 2738
BstNI	CCWGG	5 cut(s)	56, 88, 579, 1539, 2064
BstNSI	RCATGY	5 cut(s)	410, 1057, 1099, 1185, 1249
BstSCI	CCNGG	6 cut(s)	54, 86, 231, 577, 1537, 2062
BstSFI	CTRYAG	4 cut(s)	1189, 1386, 1825, 2747
BstSLI	GKGCMC	3 cut(s)	430, 2327, 2684
BstV1I	GCAGC	5 cut(s)	1022, 1768, 1843, 2594, 2793
BstV2I	GAAGAC	1 cut(s)	1536
BstX2I	RGATCY	5 cut(s)	102, 487, 858, 2092, 2613
BstYI	RGATCY	5 cut(s)	102, 487, 858, 2092, 2613
Bsu36I	CCTNAGG	2 cut(s)	466, 780
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	6 cut(s)	91, 176, 216, 582, 1115, 1852
BtgI	CCRYGG	2 cut(s)	63, 1524
BtgZI	GCGATG	1 cut(s)	959
BtsCI	GGATG	8 cut(s)	305, 445, 522, 553, 2126, 2241, 2395, 2710
BtsIMutI	CAGTG	3 cut(s)	944, 1293, 2844
BveI	ACCTGC	1 cut(s)	2754
Cac8I	GCNNGC	4 cut(s)	208, 1183, 1243, 1850
CaiI	CAGNNNCTG	1 cut(s)	2357
CciI	TCATGA	3 cut(s)	193, 2346, 2806
CfoI	GCGC	2 cut(s)	1575, 1821
Cfr10I	RCCGGY	2 cut(s)	206, 430
Cfr13I	GGNCC	5 cut(s)	19, 90, 174, 325, 723
CseI	GACGC	1 cut(s)	68
CspAI	ACCGGT	1 cut(s)	430
CspCI	CAANNNNNGTGG	2 cut(s)	1050, 1085
DriI	GACNNNNNGTC	1 cut(s)	2815
EaeI	YGGCCR	2 cut(s)	580, 1850
Eam1104I	CTCTTC	7 cut(s)	9, 143, 228, 1004, 1557, 2062, 2839
Eam1105I	GACNNNNNGTC	1 cut(s)	2815
EarI	CTCTTC	7 cut(s)	9, 143, 228, 1004, 1557, 2062, 2839
EciI	GGCGGA	1 cut(s)	225
Ecl136II	GAGCTC	3 cut(s)	26, 221, 745
Eco130I	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2191
Eco147I	AGGCCT	1 cut(s)	1115
Eco24I	GRGCYC	5 cut(s)	28, 223, 747, 1376, 2275
Eco32I	GATATC	2 cut(s)	76, 2599
Eco47I	GGWCC	3 cut(s)	19, 325, 723
Eco53kI	GAGCTC	3 cut(s)	26, 221, 745
Eco57I	CTGAAG	1 cut(s)	2379
Eco81I	CCTNAGG	2 cut(s)	466, 780
Eco88I	CYCGRG	1 cut(s)	1673
EcoICRI	GAGCTC	3 cut(s)	26, 221, 745
EcoRII	CCWGG	5 cut(s)	54, 86, 577, 1537, 2062
EcoRV	GATATC	2 cut(s)	76, 2599
EcoT14I	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2191
EcoT22I	ATGCAT	5 cut(s)	892, 975, 1183, 1508, 2759
EcoT38I	GRGCYC	5 cut(s)	28, 223, 747, 1376, 2275
ErhI	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2191
FaqI	GGGAC	4 cut(s)	333, 1156, 1497, 2088
FauI	CCCGC	4 cut(s)	37, 138, 154, 1853
FbaI	TGATCA	3 cut(s)	400, 658, 2790
FblI	GTMKAC	3 cut(s)	1077, 2223, 2516
Fnu4HI	GCNGC	6 cut(s)	1036, 1331, 1782, 1832, 2583, 2782
FokI	GGATG	8 cut(s)	292, 452, 529, 560, 2113, 2228, 2402, 2717
FriOI	GRGCYC	5 cut(s)	28, 223, 747, 1376, 2275
Fsp4HI	GCNGC	6 cut(s)	1036, 1331, 1782, 1832, 2583, 2782
FspBI	CTAG	8 cut(s)	413, 1316, 1335, 1739, 2055, 2192, 2370, 2384
GlaI	GCGC	2 cut(s)	1574, 1820
GluI	GCNGC	6 cut(s)	1036, 1331, 1782, 1832, 2583, 2782
GsaI	CCCAGC	4 cut(s)	1158, 1767, 2052, 2085
HaeIII	GGCC	6 cut(s)	91, 176, 216, 582, 1115, 1852
HapII	CCGG	5 cut(s)	207, 233, 260, 431, 2201
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	1575, 1821
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	2 cut(s)	1573, 1819
HinP1I	GCGC	2 cut(s)	1573, 1819
HincII	GTYRAC	2 cut(s)	1257, 1876
HindII	GTYRAC	2 cut(s)	1257, 1876
HindIII	AAGCTT	4 cut(s)	817, 1021, 1467, 1898
HpaI	GTTAAC	1 cut(s)	1257
HpaII	CCGG	5 cut(s)	207, 233, 260, 431, 2201
HphI	GGTGA	3 cut(s)	445, 1937, 2037
Hpy99I	CGWCG	2 cut(s)	83, 155
HpyAV	CCTTC	4 cut(s)	430, 869, 1439, 1922
HpyCH4III	ACNGT	7 cut(s)	1349, 1453, 1596, 1649, 1880, 2307, 2443
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	6 cut(s)	601, 809, 1020, 1160, 1209, 2738
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	2 cut(s)	1573, 1819
KpnI	GGTACC	2 cut(s)	385, 2169
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Ksp22I	TGATCA	3 cut(s)	400, 658, 2790
KspAI	GTTAAC	1 cut(s)	1257
LguI	GCTCTTC	3 cut(s)	228, 1004, 2839
LmnI	GCTCC	8 cut(s)	31, 781, 1123, 1379, 1528, 1931, 1988, 2503
Lsp1109I	GCAGC	5 cut(s)	1022, 1768, 1843, 2594, 2793
MaeI	CTAG	8 cut(s)	413, 1316, 1335, 1739, 2055, 2192, 2370, 2384
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	2569
MflI	RGATCY	5 cut(s)	102, 487, 858, 2092, 2613
MlsI	TGGCCA	1 cut(s)	1852
MluNI	TGGCCA	1 cut(s)	1852
MlyI	GAGTC	6 cut(s)	401, 607, 1484, 1777, 1954, 2790
MmeI	TCCRAC	2 cut(s)	30, 2652
Mox20I	TGGCCA	1 cut(s)	1852
Mph1103I	ATGCAT	5 cut(s)	892, 975, 1183, 1508, 2759
MreI	CGCCGGCG	1 cut(s)	206
MroNI	GCCGGC	1 cut(s)	206
MroXI	GAANNNNTTC	2 cut(s)	1323, 2833
MscI	TGGCCA	1 cut(s)	1852
MseI	TTAA	8 cut(s)	354, 893, 1256, 1413, 1598, 1620, 1773, 2666
MslI	CAYNNNNRTG	3 cut(s)	675, 978, 1647
Msp20I	TGGCCA	1 cut(s)	1852
MspA1I	CMGCKG	1 cut(s)	1848
MspCI	CTTAAG	1 cut(s)	1412
MspI	CCGG	5 cut(s)	207, 233, 260, 431, 2201
MspR9I	CCNGG	6 cut(s)	56, 88, 233, 579, 1539, 2064
Mva1269I	GAATGC	5 cut(s)	303, 1508, 1639, 2382, 2759
MvaI	CCWGG	5 cut(s)	56, 88, 579, 1539, 2064
MwoI	GCNNNNNNNGC	6 cut(s)	601, 809, 1020, 1160, 1209, 2738
NaeI	GCCGGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	63
NgoMIV	GCCGGC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	242
NsiI	ATGCAT	5 cut(s)	892, 975, 1183, 1508, 2759
NspI	RCATGY	5 cut(s)	410, 1057, 1099, 1185, 1249
OliI	CACNNNNGTG	1 cut(s)	1647
PaeI	GCATGC	1 cut(s)	1185
PagI	TCATGA	3 cut(s)	193, 2346, 2806
PceI	AGGCCT	1 cut(s)	1115
PciI	ACATGT	2 cut(s)	406, 1095
PciSI	GCTCTTC	3 cut(s)	228, 1004, 2839
PctI	GAATGC	5 cut(s)	303, 1508, 1639, 2382, 2759
PdiI	GCCGGC	1 cut(s)	208
PdmI	GAANNNNTTC	2 cut(s)	1323, 2833
PfeI	GAWTC	7 cut(s)	363, 1408, 1839, 1910, 2042, 2279, 2492
PflMI	CCANNNNNTGG	2 cut(s)	497, 1970
PinAI	ACCGGT	1 cut(s)	430
PkrI	GCNGC	6 cut(s)	1037, 1332, 1783, 1833, 2584, 2783
PleI	GAGTC	6 cut(s)	400, 607, 1484, 1776, 1953, 2790
PpsI	GAGTC	6 cut(s)	400, 607, 1484, 1776, 1953, 2790
PscI	ACATGT	2 cut(s)	406, 1095
PshBI	ATTAAT	1 cut(s)	1620
Psp124BI	GAGCTC	3 cut(s)	28, 223, 747
Psp6I	CCWGG	5 cut(s)	54, 86, 577, 1537, 2062
PspFI	CCCAGC	4 cut(s)	1154, 1763, 2048, 2081
PspGI	CCWGG	5 cut(s)	54, 86, 577, 1537, 2062
PspPI	GGNCC	5 cut(s)	19, 90, 174, 325, 723
PsrI	GAACNNNNNNTAC	2 cut(s)	2295, 2327
PstI	CTGCAG	2 cut(s)	1193, 2751
PstNI	CAGNNNCTG	1 cut(s)	2357
PsuI	RGATCY	5 cut(s)	102, 487, 858, 2092, 2613
RseI	CAYNNNNRTG	3 cut(s)	675, 978, 1647
SacI	GAGCTC	3 cut(s)	28, 223, 747
SapI	GCTCTTC	3 cut(s)	228, 1004, 2839
SaqAI	TTAA	8 cut(s)	354, 893, 1256, 1413, 1598, 1620, 1773, 2666
SatI	GCNGC	6 cut(s)	1036, 1331, 1782, 1832, 2583, 2782
Sau96I	GGNCC	5 cut(s)	19, 90, 174, 325, 723
SbfI	CCTGCAGG	1 cut(s)	2751
ScaI	AGTACT	2 cut(s)	629, 2161
SchI	GAGTC	6 cut(s)	401, 607, 1484, 1777, 1954, 2790
ScrFI	CCNGG	6 cut(s)	56, 88, 233, 579, 1539, 2064
SdaI	CCTGCAGG	1 cut(s)	2751
SfcI	CTRYAG	4 cut(s)	1189, 1386, 1825, 2747
SgrAI	CRCCGGYG	2 cut(s)	206, 430
SinI	GGWCC	3 cut(s)	19, 325, 723
SmiMI	CAYNNNNRTG	3 cut(s)	675, 978, 1647
SmlI	CTYRAG	8 cut(s)	369, 386, 806, 1412, 1492, 2146, 2410, 2714
SmoI	CTYRAG	8 cut(s)	369, 386, 806, 1412, 1492, 2146, 2410, 2714
SphI	GCATGC	1 cut(s)	1185
Sse8387I	CCTGCAGG	1 cut(s)	2751
SseBI	AGGCCT	1 cut(s)	1115
SsiI	CCGC	9 cut(s)	30, 131, 147, 210, 379, 721, 1210, 1331, 1846
SspI	AATATT	1 cut(s)	1757
SspMI	CTAG	8 cut(s)	413, 1316, 1335, 1739, 2055, 2192, 2370, 2384
SstI	GAGCTC	3 cut(s)	28, 223, 747
StuI	AGGCCT	1 cut(s)	1115
StyD4I	CCNGG	6 cut(s)	54, 86, 231, 577, 1537, 2062
StyI	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2191
TaaI	ACNGT	7 cut(s)	1349, 1453, 1596, 1649, 1880, 2307, 2443
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	6 cut(s)	78, 395, 1108, 1993, 2269, 2290
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	7 cut(s)	409, 454, 627, 1016, 1231, 2057, 2159
TauI	GCSGC	1 cut(s)	1333
TfiI	GAWTC	7 cut(s)	363, 1408, 1839, 1910, 2042, 2279, 2492
Tru1I	TTAA	8 cut(s)	354, 893, 1256, 1413, 1598, 1620, 1773, 2666
Tru9I	TTAA	8 cut(s)	354, 893, 1256, 1413, 1598, 1620, 1773, 2666
TscAI	CASTG	3 cut(s)	951, 1300, 2851
TseI	GCWGC	5 cut(s)	1035, 1781, 1831, 2582, 2781
TspDTI	ATGAA	8 cut(s)	494, 888, 1019, 1829, 2034, 2175, 2708, 2795
TspGWI	ACGGA	2 cut(s)	1513, 2310
TspRI	CASTG	3 cut(s)	951, 1300, 2851
Van91I	CCANNNNNTGG	2 cut(s)	497, 1970
Vha464I	CTTAAG	1 cut(s)	1412
VneI	GTGCAC	1 cut(s)	2323
VpaK11BI	GGWCC	3 cut(s)	19, 325, 723
VspI	ATTAAT	1 cut(s)	1620
XapI	RAATTY	3 cut(s)	792, 1319, 2763
XbaI	TCTAGA	3 cut(s)	1315, 1738, 2369
XceI	RCATGY	5 cut(s)	410, 1057, 1099, 1185, 1249
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1066, 2466
XmaJI	CCTAGG	1 cut(s)	2191
XmiI	GTMKAC	3 cut(s)	1077, 2223, 2516
XmnI	GAANNNNTTC	2 cut(s)	1323, 2833
XspI	CTAG	8 cut(s)	413, 1316, 1335, 1739, 2055, 2192, 2370, 2384
ZrmI	AGTACT	2 cut(s)	629, 2161
Zsp2I	ATGCAT	5 cut(s)	892, 975, 1183, 1508, 2759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.