Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007351

Physical Location & Seq

Genomic Coordinates Reverse (-)

61442514 .. 61446922

Gene Structure 4409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGTCCGACCCCGAAGAGGACCGAGGTCCCGCCATTTTCCCCAAGTCAAAGAACCTGGACGCCATGGACTTTGATATCGACGTTTCCTGGCCCTTGGATCAGATCCAGTTCCTCTCTAATCCCATCTCCCCGCTTCTCTTCTCCCCCGGCGACGACCCCTGTTCTCCTCTCTGGGCCTTTCCCGATGTCAATCATGACAAGCTCGCCGCCGGAGGCCGAGCTCTTCCCGACCCGGCCCAATTCGTTTCCGATGCTAATCCGGTTGTGGAGAAGCCAAGAGAGAATGAGGACAACAGAATGCTTCCATCCCCATTTTCGGGGCTGGACCCAAATCCAGATGGTTATTTTCTAATTAAGGAGAGAATCACTCAAGCACTGCGGTACCTCAAGGAGTCAAGTGATCAACATGTACTAGCTCAAGTTTGGGCACCGGTGAAGGATGGAAGTCGGTATGTACTCACAACCTCAGGGCAACCCTTTGTGCTGGATCCACATGATGGACTACATCAGTATAGGATGGTTTCTCTGATGTATATGTTTTCTGTGGATGGGGAGAATGATGGAGTGCTTGGGCTTCCTGGCCGTGTTTTCCAGCAAAAGATGCCCGAATGGACTCCAAATGTTCAGTACTACTCCATCAAAGAGTATCCACGGCTTGATCATGCTCAGCACTACAATGTTCAGGGAACCTTAGCTTTGCCCATATTTGAACCCTCTGGGCGGTCCTGTATTGGTGTAATTGAGCTCATCATGACTTCTCAGAAGATCAACTACGCTCCTGAGGTTGATAAAATTTGCAAAGCACTTGAGGCAGTAAGCTTGAAAAGTTCAGAGATATTGGATCATACAAGCACACAGATCCAGATACGCAATGAAGGTCGCCAAAATGCATTAACTGAAATCTTGGAGATACTGACAATGGTATGTGAAACTCATAAATTACCACTGGCTCAGACATGGGTTCCATGTATGCATCGCAATGTTTTGGCTTATGGTGGTGGCATGAAGAAGAGCTGTACGAGCTTTGATGGTAGCTGCATGGAACAGGTCTGCATGTCCACAACAGATGTGGCAGTCTACATTGTAGATGCTCACATGTGGGGTTTTCGAGAGGCCTGTGTAGAGCATCACTTACAAAAGGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCGTAATGCATGCTTCTGCAGAGACATTAGCCAGTTCCGCAAAACAGAATACCCTTTAGTACACTACGCACGCATGTTTGCGTTAACCAGCTCATTTGCAATCTGTTTACAGAGCACTCACACTGGAAATGATGATTACATTCTAGAATTTTTTCTGCCGCCTAGCATTAGAGACAGTTGTGAACAGCAGACTTTATTGGGCTCCATATTGGCTATAGTGAAAGATCATTGCCAGAATCTTAAGGTTGCTTCTGGAATTGGACTTGCAGAGGAAGGAACAGTTGAGATTGTTCAAGCTTCTATAAATGAGGGACTTGACTCAAGACTTGAATGCATACAGATCCCCTGTTCCGTGGAGCCACTTCCAGGGTCTTCCTTACCTAACAGAGAAGAGATGGTGTGCCTAAATCCAGCAAAACTACAGTTATCGGTGGACATTGATGCTATTAATGATGAGAGGAATGCAGTTCACAACGGTGGAAAAAACAACATTTCTGTTCCCGAGAATAAAGACATAAAAAAGACATCAGAGAGGAAGCGTGGGAAAACTGAGAAATCAATTAGTCTAGAGGTTCTTCAACAATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAACATGGAATCTCCCGCTGGCCATCTCGCAAGATCAACAAGGTCAACCGTTCTCTCAGTAAGCTAAAGCTTGTAATTGAATCTGTCCAAGGTGGTGAAGGAGCATTTGGTTTGAGTCCTCTTACTACAAGTCCACTTACTGGTGCTGTTGGCTCCATTTCTCGACCTTATACAAGCTCTCAACCCTATGAAGTCCAGGGAGAAAAGAAAGATTCACCACCAGGAAGAGAGGGACAGGCTGGGATAGAAGATCCATTGCAAGATATTGGTAATGGCTCAAACTCATCCAAAACAGTTAGTGGCTCAAGGGAGGCGAGTACTGGTACCCCTACTTCTCATGGTTCATGCCAAGGTAGTCCGGCAAATGGAAGTGCAATGGTAAAGGACCCCTTTGTTTCTTCCATCCATGAGCAATTCGTTGAAGTTGATCGCTCCCCTGAATCAGCATTTCGACCACCAGAGGAACTGTATGTACCAGTTCCGTGCTCAATACCAAATGCTCTCCTTATGACAGAACCTGAAGAACCATCTAGAGGAATGCTACTGGAGGATGCTGGAAGTTCAAAAGACTTGAGAAATCTGTGTCCTTTTACCGATATAACTGTGCACGAGCAAGTTCCAGAAGTTTTCTGGACAGACCCCCCATGTCCCAATTCAGCTCCTAACCAATCCATGTCTACTCTTGCTTACACAATGCCTCATAACACATCTTTACAAGAAATGAGGAGTGTAACCATAAAGGCAGCATATAAAGATGATATCATTAGGTTTCGGATCTCTATGAGTTCTTGTATAGTGGATTTGAAAGAGGAAGTGGCAAAGAGATTAAAGTTGGAAGTGGGCACATTTGATATGAAGTATATGGATGATGACCTTGAGTGGGTTCTAATAGCTTGTGATGCAGACCTGCAGGAATGCATGGAAATTTGCAGATCATCAGGCAGCAATATGATCAGACTCTCTGTTCATGACATTCTGTCCAATCTTGGAAGCTCTTCTGAGAGCACTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010118 GO:0010167 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042126 GO:0042128 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071941 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001057 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

948

Amino Acids

104.69

Weight (kDa)

5.17

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	137 - 271	8e-06	NLP protein GAF domain
GAF_NLP	PF22922	289 - 471	1.8e-77	NLP protein GAF domain
RWP-RK	PF02042	577 - 624	2.1e-23	RWP-RK domain
PB1	PF00564	854 - 934	1.5e-20	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64530 AT1G64530 AT4G24020 AT4G24020
fragaria_vesca	FvH4_5g11570 FvH4_5g11570
malus_domestica	MD06G1111900.v1.1 MD14G1133200.v1.1 MD14G1133300.v1.1
prunus_persica	Prupe.5G124900_v2.0.a1 Prupe.5G124900_v2.0.a1 Prupe.5G125000_v2.0.a1
pyrus_communis	pycom06g10490
rosa_chinensis	RchiOBHm_Chr7g0186181
rosa_laevigata	RLG00000004858
rosa_multiflora	Rmu_sc0009528.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268340
rosa_rugosa	Rorug06G0472600 Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068900 Rh7BG084800 Rh7CG079200 Rh7DG079400
rosa_wichuraiana	Rw7G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2745
Acc65I	GGTACC	2 cut(s)	381, 2153
AccB1I	GGYRCC	3 cut(s)	381, 427, 2153
AccB7I	CCANNNNNTGG	2 cut(s)	497, 1970
AccI	GTMKAC	2 cut(s)	1077, 2507
AciI	CCGC	8 cut(s)	30, 131, 207, 379, 721, 1210, 1331, 1846
AclWI	GGATC	9 cut(s)	97, 105, 482, 495, 849, 853, 1507, 2075, 2612
AcoI	YGGCCR	2 cut(s)	580, 1850
AcsI	RAATTY	3 cut(s)	792, 1319, 2754
AcuI	CTGAAG	1 cut(s)	2370
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	9 cut(s)	383, 411, 456, 629, 1018, 1233, 2149, 2155, 2304
AflII	CTTAAG	1 cut(s)	1412
AflIII	ACRYGT	2 cut(s)	406, 1095
AgeI	ACCGGT	1 cut(s)	430
AgsI	TTSAA	9 cut(s)	710, 823, 1466, 1502, 1751, 1910, 2252, 2394, 2635
AhdI	GACNNNNNGTC	1 cut(s)	2806
AjnI	CCWGG	6 cut(s)	54, 86, 577, 1537, 2025, 2050
AjuI	GAANNNNNNNTTGG	2 cut(s)	1920, 1952
AleI	CACNNNNGTG	1 cut(s)	1647
Alw21I	GWGCWC	6 cut(s)	223, 747, 1289, 2318, 2439, 2837
Alw26I	GTCTC	2 cut(s)	1188, 1338
Alw44I	GTGCAC	1 cut(s)	2435
AlwI	GGATC	9 cut(s)	97, 105, 482, 495, 849, 853, 1507, 2075, 2612
AlwNI	CAGNNNCTG	1 cut(s)	2348
Ama87I	CYCGRG	1 cut(s)	1673
AoxI	GGCC	7 cut(s)	89, 174, 214, 234, 580, 1113, 1850
ApaLI	GTGCAC	1 cut(s)	2435
ApeKI	GCWGC	4 cut(s)	1035, 1781, 2573, 2772
ApoI	RAATTY	3 cut(s)	792, 1319, 2754
AseI	ATTAAT	1 cut(s)	1620
AsiGI	ACCGGT	1 cut(s)	430
Asp700I	GAANNNNTTC	2 cut(s)	1323, 2824
Asp718I	GGTACC	2 cut(s)	381, 2153
AspLEI	GCGC	1 cut(s)	1821
AspS9I	GGNCC	8 cut(s)	19, 26, 90, 174, 235, 325, 723, 2215
AsuC2I	CCSGG	2 cut(s)	147, 233
AsuHPI	GGTGA	3 cut(s)	445, 1937, 2037
AvaI	CYCGRG	1 cut(s)	1673
AvaII	GGWCC	5 cut(s)	19, 26, 325, 723, 2215
AxyI	CCTNAGG	2 cut(s)	466, 780
BaeGI	GKGCMC	3 cut(s)	430, 2439, 2675
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BalI	TGGCCA	1 cut(s)	1852
BamHI	GGATCC	1 cut(s)	487
BanI	GGYRCC	3 cut(s)	381, 427, 2153
BanII	GRGCYC	3 cut(s)	223, 747, 1376
BarI	GAAGNNNNNNTAC	4 cut(s)	755, 787, 2146, 2178
BauI	CACGAG	1 cut(s)	2438
BbsI	GAAGAC	1 cut(s)	1536
Bbv12I	GWGCWC	6 cut(s)	223, 747, 1289, 2318, 2439, 2837
BbvI	GCAGC	4 cut(s)	1022, 1768, 2585, 2784
BceAI	ACGGC	2 cut(s)	567, 668
BciT130I	CCWGG	6 cut(s)	56, 88, 579, 1539, 2027, 2052
BciVI	GTATCC	1 cut(s)	657
BclI	TGATCA	3 cut(s)	400, 658, 2781
BcnI	CCSGG	2 cut(s)	147, 233
BcoDI	GTCTC	2 cut(s)	1188, 1338
BfaI	CTAG	5 cut(s)	413, 1316, 1335, 1739, 2361
BfmI	CTRYAG	5 cut(s)	1189, 1386, 1592, 1825, 2738
BfrI	CTTAAG	1 cut(s)	1412
BfuAI	ACCTGC	1 cut(s)	2745
BfuI	GTATCC	1 cut(s)	657
BisI	GCNGC	6 cut(s)	207, 1036, 1331, 1782, 2574, 2773
BlpI	GCTNAGC	1 cut(s)	666
BlsI	GCNGC	6 cut(s)	208, 1037, 1332, 1783, 2575, 2774
BmcAI	AGTACT	2 cut(s)	629, 2149
Bme1390I	CCNGG	8 cut(s)	56, 88, 147, 233, 579, 1539, 2027, 2052
Bme18I	GGWCC	5 cut(s)	19, 26, 325, 723, 2215
BmeRI	GACNNNNNGTC	1 cut(s)	2806
BmeT110I	CYCGRG	1 cut(s)	1673
BmgT120I	GGNCC	8 cut(s)	19, 26, 90, 174, 235, 325, 723, 2215
BmrFI	CCNGG	8 cut(s)	56, 88, 147, 233, 579, 1539, 2027, 2052
BoxI	GACNNNNGTC	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	1536
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BpmI	CTGGAG	1 cut(s)	2396
Bpu10I	CCTNAGC	1 cut(s)	691
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	8 cut(s)	354, 371, 402, 827, 1477, 2119, 2422, 2726
BpuMI	CCSGG	2 cut(s)	147, 233
BsaBI	GATNNNNATC	2 cut(s)	189, 255
BsaHI	GRCGYC	1 cut(s)	60
BsaWI	WCCGGW	2 cut(s)	259, 430
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	8 cut(s)	106, 951, 1204, 1300, 1975, 2155, 2306, 2379
Bse21I	CCTNAGG	2 cut(s)	466, 780
Bse3DI	GCAATG	5 cut(s)	877, 985, 1399, 2084, 2211
Bse8I	GATNNNNATC	2 cut(s)	189, 255
BseBI	CCWGG	6 cut(s)	56, 88, 579, 1539, 2027, 2052
BseGI	GGATG	8 cut(s)	305, 445, 522, 553, 2114, 2232, 2386, 2701
BseJI	GATNNNNATC	2 cut(s)	189, 255
BseMI	GCAATG	5 cut(s)	877, 985, 1399, 2084, 2211
BseMII	CTCAG	9 cut(s)	480, 680, 771, 773, 965, 1713, 1900, 2820, 2829
BseNI	ACTGG	8 cut(s)	106, 951, 1204, 1300, 1975, 2155, 2306, 2379
BseRI	GAGGAG	2 cut(s)	156, 2569
BseSI	GKGCMC	3 cut(s)	430, 2439, 2675
BseXI	GCAGC	4 cut(s)	1022, 1768, 2585, 2784
BseYI	CCCAGC	3 cut(s)	1154, 1763, 2069
BshFI	GGCC	7 cut(s)	91, 176, 216, 236, 582, 1115, 1852
BshNI	GGYRCC	3 cut(s)	381, 427, 2153
BshTI	ACCGGT	1 cut(s)	430
BsiHKAI	GWGCWC	6 cut(s)	223, 747, 1289, 2318, 2439, 2837
BsiHKCI	CYCGRG	1 cut(s)	1673
BsiSI	CCGG	6 cut(s)	147, 210, 233, 260, 431, 2189
BslFI	GGGAC	5 cut(s)	12, 1156, 1497, 2076, 2463
BsmAI	GTCTC	2 cut(s)	1188, 1338
BsmFI	GGGAC	5 cut(s)	12, 1156, 1497, 2076, 2463
BsmI	GAATGC	5 cut(s)	303, 1508, 1639, 2373, 2750
BsnI	GGCC	7 cut(s)	91, 176, 216, 236, 582, 1115, 1852
BsoBI	CYCGRG	1 cut(s)	1673
Bsp1286I	GDGCHC	9 cut(s)	223, 430, 747, 1289, 1376, 2318, 2439, 2675, 2837
Bsp1720I	GCTNAGC	1 cut(s)	666
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	8 cut(s)	30, 131, 207, 379, 721, 1210, 1331, 1846
BspANI	GGCC	7 cut(s)	91, 176, 216, 236, 582, 1115, 1852
BspCNI	CTCAG	9 cut(s)	479, 679, 772, 772, 964, 1714, 1899, 2821, 2830
BspHI	TCATGA	3 cut(s)	193, 750, 2797
BspMAI	CTGCAG	2 cut(s)	1193, 2742
BspMI	ACCTGC	1 cut(s)	2745
BspPI	GGATC	9 cut(s)	97, 105, 482, 495, 849, 853, 1507, 2075, 2612
BspQI	GCTCTTC	3 cut(s)	228, 1004, 2830
BspT107I	GGYRCC	3 cut(s)	381, 427, 2153
BspTI	CTTAAG	1 cut(s)	1412
BsrDI	GCAATG	5 cut(s)	877, 985, 1399, 2084, 2211
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	8 cut(s)	106, 951, 1204, 1300, 1975, 2155, 2306, 2379
BssAI	RCCGGY	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	2438
BssT1I	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2179
Bst2BI	CACGAG	1 cut(s)	2438
Bst2UI	CCWGG	6 cut(s)	56, 88, 579, 1539, 2027, 2052
Bst4CI	ACNGT	8 cut(s)	1349, 1453, 1596, 1649, 1880, 2125, 2298, 2434
Bst6I	CTCTTC	7 cut(s)	9, 143, 228, 1004, 1557, 2050, 2830
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	1412
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstC8I	GCNNGC	4 cut(s)	204, 1183, 1243, 1850
BstDSI	CCRYGG	3 cut(s)	63, 650, 1524
BstF5I	GGATG	8 cut(s)	305, 445, 522, 553, 2114, 2232, 2386, 2701
BstHHI	GCGC	1 cut(s)	1821
BstMAI	GTCTC	2 cut(s)	1188, 1338
BstMWI	GCNNNNNNNGC	6 cut(s)	601, 809, 1020, 1160, 1209, 2729
BstNI	CCWGG	6 cut(s)	56, 88, 579, 1539, 2027, 2052
BstNSI	RCATGY	5 cut(s)	410, 1057, 1099, 1185, 1249
BstPAI	GACNNNNGTC	1 cut(s)	24
BstSCI	CCNGG	8 cut(s)	54, 86, 145, 231, 577, 1537, 2025, 2050
BstSFI	CTRYAG	5 cut(s)	1189, 1386, 1592, 1825, 2738
BstSLI	GKGCMC	3 cut(s)	430, 2439, 2675
BstV1I	GCAGC	4 cut(s)	1022, 1768, 2585, 2784
BstV2I	GAAGAC	1 cut(s)	1536
BstX2I	RGATCY	6 cut(s)	102, 487, 858, 1512, 2080, 2604
BstYI	RGATCY	6 cut(s)	102, 487, 858, 1512, 2080, 2604
Bsu36I	CCTNAGG	2 cut(s)	466, 780
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	7 cut(s)	91, 176, 216, 236, 582, 1115, 1852
BtgI	CCRYGG	3 cut(s)	63, 650, 1524
BtgZI	GCGATG	1 cut(s)	959
BtsCI	GGATG	8 cut(s)	305, 445, 522, 553, 2114, 2232, 2386, 2701
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	4 cut(s)	374, 944, 1293, 2835
BveI	ACCTGC	1 cut(s)	2745
Cac8I	GCNNGC	4 cut(s)	204, 1183, 1243, 1850
CaiI	CAGNNNCTG	1 cut(s)	2348
CciI	TCATGA	3 cut(s)	193, 750, 2797
CfoI	GCGC	1 cut(s)	1821
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	8 cut(s)	19, 26, 90, 174, 235, 325, 723, 2215
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	9 cut(s)	382, 410, 455, 628, 1017, 1232, 2148, 2154, 2303
CspAI	ACCGGT	1 cut(s)	430
CspCI	CAANNNNNGTGG	2 cut(s)	1050, 1085
CviQI	GTAC	9 cut(s)	382, 410, 455, 628, 1017, 1232, 2148, 2154, 2303
DriI	GACNNNNNGTC	1 cut(s)	2806
EaeI	YGGCCR	2 cut(s)	580, 1850
Eam1104I	CTCTTC	7 cut(s)	9, 143, 228, 1004, 1557, 2050, 2830
Eam1105I	GACNNNNNGTC	1 cut(s)	2806
EarI	CTCTTC	7 cut(s)	9, 143, 228, 1004, 1557, 2050, 2830
Ecl136II	GAGCTC	2 cut(s)	221, 745
Eco130I	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2179
Eco147I	AGGCCT	1 cut(s)	1115
Eco24I	GRGCYC	3 cut(s)	223, 747, 1376
Eco32I	GATATC	2 cut(s)	76, 2590
Eco47I	GGWCC	5 cut(s)	19, 26, 325, 723, 2215
Eco53kI	GAGCTC	2 cut(s)	221, 745
Eco57I	CTGAAG	1 cut(s)	2370
Eco81I	CCTNAGG	2 cut(s)	466, 780
Eco88I	CYCGRG	1 cut(s)	1673
EcoICRI	GAGCTC	2 cut(s)	221, 745
EcoO109I	RGGNCCY	2 cut(s)	26, 2215
EcoRII	CCWGG	6 cut(s)	54, 86, 577, 1537, 2025, 2050
EcoRV	GATATC	2 cut(s)	76, 2590
EcoT14I	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2179
EcoT22I	ATGCAT	5 cut(s)	892, 975, 1183, 1508, 2750
EcoT38I	GRGCYC	3 cut(s)	223, 747, 1376
ErhI	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2179
FalI	AAGNNNNNCTT	2 cut(s)	2204, 2236
FaqI	GGGAC	5 cut(s)	12, 1156, 1497, 2076, 2463
FauI	CCCGC	3 cut(s)	37, 138, 1853
FbaI	TGATCA	3 cut(s)	400, 658, 2781
FblI	GTMKAC	2 cut(s)	1077, 2507
Fnu4HI	GCNGC	6 cut(s)	207, 1036, 1331, 1782, 2574, 2773
FokI	GGATG	8 cut(s)	292, 452, 529, 560, 2101, 2219, 2393, 2708
FriOI	GRGCYC	3 cut(s)	223, 747, 1376
Fsp4HI	GCNGC	6 cut(s)	207, 1036, 1331, 1782, 2574, 2773
FspBI	CTAG	5 cut(s)	413, 1316, 1335, 1739, 2361
GlaI	GCGC	1 cut(s)	1820
GluI	GCNGC	6 cut(s)	207, 1036, 1331, 1782, 2574, 2773
GsaI	CCCAGC	3 cut(s)	1158, 1767, 2073
GsuI	CTGGAG	1 cut(s)	2396
HaeIII	GGCC	7 cut(s)	91, 176, 216, 236, 582, 1115, 1852
HapII	CCGG	6 cut(s)	147, 210, 233, 260, 431, 2189
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	1821
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	1819
HinP1I	GCGC	1 cut(s)	1819
HincII	GTYRAC	2 cut(s)	1257, 1876
HindII	GTYRAC	2 cut(s)	1257, 1876
HindIII	AAGCTT	3 cut(s)	817, 1467, 1898
HpaI	GTTAAC	1 cut(s)	1257
HpaII	CCGG	6 cut(s)	147, 210, 233, 260, 431, 2189
HphI	GGTGA	3 cut(s)	445, 1937, 2037
Hpy99I	CGWCG	2 cut(s)	83, 155
HpyAV	CCTTC	4 cut(s)	430, 869, 1439, 1922
HpyCH4III	ACNGT	8 cut(s)	1349, 1453, 1596, 1649, 1880, 2125, 2298, 2434
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	6 cut(s)	601, 809, 1020, 1160, 1209, 2729
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	1 cut(s)	1819
KpnI	GGTACC	2 cut(s)	385, 2157
Ksp22I	TGATCA	3 cut(s)	400, 658, 2781
KspAI	GTTAAC	1 cut(s)	1257
LguI	GCTCTTC	3 cut(s)	228, 1004, 2830
LmnI	GCTCC	7 cut(s)	781, 1379, 1528, 1931, 1988, 2267, 2494
Lsp1109I	GCAGC	4 cut(s)	1022, 1768, 2585, 2784
MaeI	CTAG	5 cut(s)	413, 1316, 1335, 1739, 2361
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	2560
MflI	RGATCY	6 cut(s)	102, 487, 858, 1512, 2080, 2604
MhlI	GDGCHC	9 cut(s)	223, 430, 747, 1289, 1376, 2318, 2439, 2675, 2837
MlsI	TGGCCA	1 cut(s)	1852
MluNI	TGGCCA	1 cut(s)	1852
MlyI	GAGTC	6 cut(s)	401, 607, 1484, 1777, 1954, 2781
MmeI	TCCRAC	2 cut(s)	30, 2643
Mox20I	TGGCCA	1 cut(s)	1852
Mph1103I	ATGCAT	5 cut(s)	892, 975, 1183, 1508, 2750
MroXI	GAANNNNTTC	2 cut(s)	1323, 2824
MscI	TGGCCA	1 cut(s)	1852
MseI	TTAA	7 cut(s)	354, 893, 1256, 1413, 1620, 1773, 2657
MslI	CAYNNNNRTG	3 cut(s)	675, 978, 1647
Msp20I	TGGCCA	1 cut(s)	1852
MspA1I	CMGCKG	1 cut(s)	1848
MspCI	CTTAAG	1 cut(s)	1412
MspI	CCGG	6 cut(s)	147, 210, 233, 260, 431, 2189
MspR9I	CCNGG	8 cut(s)	56, 88, 147, 233, 579, 1539, 2027, 2052
Mva1269I	GAATGC	5 cut(s)	303, 1508, 1639, 2373, 2750
MvaI	CCWGG	6 cut(s)	56, 88, 579, 1539, 2027, 2052
MwoI	GCNNNNNNNGC	6 cut(s)	601, 809, 1020, 1160, 1209, 2729
NciI	CCSGG	2 cut(s)	147, 233
NcoI	CCATGG	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	242
NsiI	ATGCAT	5 cut(s)	892, 975, 1183, 1508, 2750
NspI	RCATGY	5 cut(s)	410, 1057, 1099, 1185, 1249
OliI	CACNNNNGTG	1 cut(s)	1647
PaeI	GCATGC	1 cut(s)	1185
PagI	TCATGA	3 cut(s)	193, 750, 2797
PceI	AGGCCT	1 cut(s)	1115
PciI	ACATGT	2 cut(s)	406, 1095
PciSI	GCTCTTC	3 cut(s)	228, 1004, 2830
PctI	GAATGC	5 cut(s)	303, 1508, 1639, 2373, 2750
PdmI	GAANNNNTTC	2 cut(s)	1323, 2824
PfeI	GAWTC	6 cut(s)	363, 1408, 1839, 1910, 2042, 2270
PflMI	CCANNNNNTGG	2 cut(s)	497, 1970
PinAI	ACCGGT	1 cut(s)	430
PkrI	GCNGC	6 cut(s)	208, 1037, 1332, 1783, 2575, 2774
PleI	GAGTC	6 cut(s)	400, 607, 1484, 1776, 1953, 2781
PpsI	GAGTC	6 cut(s)	400, 607, 1484, 1776, 1953, 2781
PpuMI	RGGWCCY	2 cut(s)	26, 2215
PscI	ACATGT	2 cut(s)	406, 1095
PshAI	GACNNNNGTC	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	1620
Psp124BI	GAGCTC	2 cut(s)	223, 747
Psp5II	RGGWCCY	2 cut(s)	26, 2215
Psp6I	CCWGG	6 cut(s)	54, 86, 577, 1537, 2025, 2050
PspFI	CCCAGC	3 cut(s)	1154, 1763, 2069
PspGI	CCWGG	6 cut(s)	54, 86, 577, 1537, 2025, 2050
PspPI	GGNCC	8 cut(s)	19, 26, 90, 174, 235, 325, 723, 2215
PspPPI	RGGWCCY	2 cut(s)	26, 2215
PsrI	GAACNNNNNNTAC	2 cut(s)	2286, 2318
PstI	CTGCAG	2 cut(s)	1193, 2742
PstNI	CAGNNNCTG	1 cut(s)	2348
PsuI	RGATCY	6 cut(s)	102, 487, 858, 1512, 2080, 2604
RsaI	GTAC	9 cut(s)	383, 411, 456, 629, 1018, 1233, 2149, 2155, 2304
RsaNI	GTAC	9 cut(s)	382, 410, 455, 628, 1017, 1232, 2148, 2154, 2303
RseI	CAYNNNNRTG	3 cut(s)	675, 978, 1647
SacI	GAGCTC	2 cut(s)	223, 747
SapI	GCTCTTC	3 cut(s)	228, 1004, 2830
SaqAI	TTAA	7 cut(s)	354, 893, 1256, 1413, 1620, 1773, 2657
SatI	GCNGC	6 cut(s)	207, 1036, 1331, 1782, 2574, 2773
Sau96I	GGNCC	8 cut(s)	19, 26, 90, 174, 235, 325, 723, 2215
SbfI	CCTGCAGG	1 cut(s)	2742
ScaI	AGTACT	2 cut(s)	629, 2149
SchI	GAGTC	6 cut(s)	401, 607, 1484, 1777, 1954, 2781
ScrFI	CCNGG	8 cut(s)	56, 88, 147, 233, 579, 1539, 2027, 2052
SdaI	CCTGCAGG	1 cut(s)	2742
SduI	GDGCHC	9 cut(s)	223, 430, 747, 1289, 1376, 2318, 2439, 2675, 2837
SfcI	CTRYAG	5 cut(s)	1189, 1386, 1592, 1825, 2738
SgrAI	CRCCGGYG	1 cut(s)	430
SinI	GGWCC	5 cut(s)	19, 26, 325, 723, 2215
SmiMI	CAYNNNNRTG	3 cut(s)	675, 978, 1647
SmlI	CTYRAG	9 cut(s)	369, 386, 417, 806, 1412, 1492, 2134, 2401, 2705
SmoI	CTYRAG	9 cut(s)	369, 386, 417, 806, 1412, 1492, 2134, 2401, 2705
SphI	GCATGC	1 cut(s)	1185
Sse8387I	CCTGCAGG	1 cut(s)	2742
SseBI	AGGCCT	1 cut(s)	1115
SsiI	CCGC	8 cut(s)	30, 131, 207, 379, 721, 1210, 1331, 1846
SspI	AATATT	1 cut(s)	1757
SspMI	CTAG	5 cut(s)	413, 1316, 1335, 1739, 2361
SstI	GAGCTC	2 cut(s)	223, 747
StuI	AGGCCT	1 cut(s)	1115
StyD4I	CCNGG	8 cut(s)	54, 86, 145, 231, 577, 1537, 2025, 2050
StyI	CCWWGG	5 cut(s)	63, 93, 1792, 1918, 2179
TaaI	ACNGT	8 cut(s)	1349, 1453, 1596, 1649, 1880, 2125, 2298, 2434
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	78, 1108, 1993, 2281
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	5 cut(s)	409, 454, 627, 1231, 2147
TauI	GCSGC	2 cut(s)	209, 1333
TfiI	GAWTC	6 cut(s)	363, 1408, 1839, 1910, 2042, 2270
Tru1I	TTAA	7 cut(s)	354, 893, 1256, 1413, 1620, 1773, 2657
Tru9I	TTAA	7 cut(s)	354, 893, 1256, 1413, 1620, 1773, 2657
TscAI	CASTG	4 cut(s)	381, 951, 1300, 2842
TseI	GCWGC	4 cut(s)	1035, 1781, 2573, 2772
TspDTI	ATGAA	7 cut(s)	888, 1019, 1829, 2034, 2163, 2699, 2786
TspGWI	ACGGA	2 cut(s)	1513, 2301
TspRI	CASTG	4 cut(s)	381, 951, 1300, 2842
Van91I	CCANNNNNTGG	2 cut(s)	497, 1970
Vha464I	CTTAAG	1 cut(s)	1412
VneI	GTGCAC	1 cut(s)	2435
VpaK11BI	GGWCC	5 cut(s)	19, 26, 325, 723, 2215
VspI	ATTAAT	1 cut(s)	1620
XapI	RAATTY	3 cut(s)	792, 1319, 2754
XbaI	TCTAGA	3 cut(s)	1315, 1738, 2360
XceI	RCATGY	5 cut(s)	410, 1057, 1099, 1185, 1249
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1066, 2457
XmiI	GTMKAC	2 cut(s)	1077, 2507
XmnI	GAANNNNTTC	2 cut(s)	1323, 2824
XspI	CTAG	5 cut(s)	413, 1316, 1335, 1739, 2361
ZrmI	AGTACT	2 cut(s)	629, 2149
Zsp2I	ATGCAT	5 cut(s)	892, 975, 1183, 1508, 2750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.