Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007351

Physical Location & Seq

Genomic Coordinates Reverse (-)

63143685 .. 63148079

Gene Structure 4395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004858

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2862 bp

ATGTCCGACCCCGAAGAGGACCGAGCTCCCGCCATTTTCCCCAAGTCAAAGAACCTGGACGCCATGGACTTTGATATCGACGTTTCCTGGCCCTTGGATCAGATCCAGTTCCCCTCTAATCCCACCTCCCCGCTTCTCTTCTCCCCCGCCGACGACCCCTGTTCTCCTCTCTGGGCATTTCCCGATGTCAATCATGACAAGCTCGCCGGAGGAGGAGGCCGAGCTCTTCCCGACCGGGCCCAATTCGTTGCCGATGCTAATCCGGTTGTGGAGAAGCCAAGAGAGAATGAGGACAACAGAATGCATCCATCCCCATTTTCGGGACTGGACCCAAATCCAGATGGTTATTTTCTAATTAAGGAGAGAATCACTCAAGCACTGCGGTACCTCAAGGAGTCGAGTGATCAACATGTACTAGCTCAGGTTTGGGCACCAGTGAAGCATGGAAGTCGGTATGTACTCACAACCTCAGGGCAACCCTTTGTGCTGGATCCACATGATGGACTTCATCAGTATAGGATGGTTTCTCTGATGTATATGTTTTCTGTGGATGGGGAGAATGATGGAGTGCTTGGGCTTCCTGGCCGTGTTTTCCAGCAAAAGATGCCCGAATGGACTCCAAATGTTCAGTACTACTCCATCAAAGAGTATCCACGGCTTGATCATGCTCAGCACTACAATGTTCAGGGAACCTTAGCTTTGCCCATATTTGAACCCTCTGGGCGGTCCTGTATTGGTGTAATTGAGCTCATAATGACTTCTCAGAAGATCAACTATGCTCCTGAGGTTGATAAAATTTGCAAAGCACTTGAGGCAGTAAGCTTGAAAAGTTCAGAGATATTGGATCATACAAGCACACAGATCCAGATACGCAATGAAGGTCGCCAAAATGCATTAACTGAAATCTTGGAGATACTGACAATGGTATGTGAAACTCATAAATTACCACTGGCTCAGACATGGGTTCCATGTATGCATCGCAATGTTTTGGCATATGGTGGTGGCATGAAGAAGAGCTGTACGAGCTTTGATGGTAGCTGCATGGAACAGGTCTGCATGTCCACAACAGATGTGGCAGTCTACATTGTAGATGCTCACATGTGGGGTTTTCGAGAGGCCTGTGTAGAGCATCACTTACAAAAGGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCGTAATGCATGCTTCTGCAGAGACATTAGCCAGTTCCGCAAAACAGAATACCCTCTAGTACACTACGCACGCATGTTTAGGTTAACTAGCTCATTTGCAATCTGTTTACAGAGCACTCACACTGGAAATGATGATTACATTCTAGAATTTTTTCTGCCGCCTAGCATCAGAGACAGTTGTGAACAGCAGACTTTATTGGGCTCCATATTGGCTATAGTGAAAGATCCTTGCCAGAATCTTAAGGTTGCTTCTGGAATTGGACTTGCAGAGGAAGGAACAGTTGAGATTGTTCAAGCTTCTATAAATGAGGGACTTGACTCAAGACTTGAATGCATACAGATCCCCTGTTCTGTGGAGCCACTTCTAGGGTCTTCCTTACCTAACAGAGAAGAGATAGTGCGCCTAAATCCAGCAAAACCACAGTTATTGGTGGACATTGATGCTATTAATGATGAGAGGAATGCAGTTCACAACGGTGGAAAAAACAACATTTCTGTTCCCGAGAATAAAGACATAAAAAAGACATCAGAGAGGAAGCGTGGGAAAACTGAGAAATCAATTAGTCTAGAGGTTCTTCAACAATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAACATGGAATCTCCCGCTGGCCATCTCGCAAGATCAACAAGGTCAACCGTTCTCTCAGTAAGCTAAAGCTTGTAATTGAATCTGTCCAAGGTGGTGAAGGAGCATTTGGTTTGAGTCCTCTTACTACAAGTCCACTTACTGGTGCTGTTGGCTCCATTTCTCGACCTTATACTAGCTCTCAACCCTATGAAGTTCAGGGAGAAAAGAAAGATTCACCCAGCTCCAGTACACCAGGAAGAGAGGGACAGGCTGGGATAGAAGATCCATTGCAAGATATTGGTAATGGCTCAAACTCATCCAAAACAGGTAGTGGCTCAAGGGAGGCGAGTACTGGTACCCCTACTTCTCATGGTTCATGCCAAGGTAGTCCGGCAAATGGAAGTGCAATGGTAAAGGATCCCTTTGTTTCTTCCATCCATGAGCAATTCGTTGAAGTTGATCGCTCCCCTGAATCAGCATTTCGACCACCAGAGGAACTGTATGTACCAGTTCCGTGCTCAATACCAGATGCTCTCCTCATGATAGAACCTGAAGAACCATCTAGAGGAATGCTACTAGAGGATGCTGGAAGTTCAAAAGACTTGAGAAATCTGTGTCCTTTTACCGATATAACTGTGCACGAGCAAGTTCCAGAAGTTTTCTGGACAGACCCCCCATGTCCCGATTCAGCTCCTAACCAATCCATGTCTACTCTTGCTTACACAATGCCTCATAACACATCTTTACAAGAAATGAGGAGTGTAACCATAAAGGCAGCATATAAAGATGATATCATTAGGTTTCGGATCTCTATGAGTTCTTGTATAGTGGATTTGAAAGAGGAAGTGGCAAAGAGATTAAAGTTGGAAGTGGGCACATTTGATATGAAGTATATGGATGATGACCTAGAGTGGGTTCTGATAGCTTGTGATGCAGACCTGCAGGAATGCATGGAAATTTGCAGATCATCAGGCAGCAATATGATCAGACTCTCTGTTCATGACATTCTGTCCAATCTTGGAAGCTCTTCTGAGAGCACTCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010118 GO:0010167 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042126 GO:0042128 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071941 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001057 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

954

Amino Acids

105.26

Weight (kDa)

5.28

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	138 - 272	4.7e-06	NLP protein GAF domain
GAF_NLP	PF22922	290 - 472	6.3e-77	NLP protein GAF domain
RWP-RK	PF02042	578 - 625	2.1e-23	RWP-RK domain
PB1	PF00564	859 - 939	1.5e-20	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64530 AT1G64530 AT4G24020 AT4G24020
fragaria_vesca	FvH4_5g11570 FvH4_5g11570
malus_domestica	MD06G1111900.v1.1 MD14G1133200.v1.1 MD14G1133300.v1.1
prunus_persica	Prupe.5G124900_v2.0.a1 Prupe.5G124900_v2.0.a1 Prupe.5G125000_v2.0.a1
pyrus_communis	pycom06g10490
rosa_chinensis	RchiOBHm_Chr7g0186181
rosa_laevigata	RLG00000004858
rosa_multiflora	Rmu_sc0009528.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268340
rosa_rugosa	Rorug06G0472600 Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068900 Rh7BG084800 Rh7CG079200 Rh7DG079400
rosa_wichuraiana	Rw7G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2760
Acc65I	GGTACC	2 cut(s)	384, 2168
AccB1I	GGYRCC	3 cut(s)	384, 430, 2168
AccB7I	CCANNNNNTGG	2 cut(s)	500, 1973
AccI	GTMKAC	2 cut(s)	1080, 2522
AciI	CCGC	8 cut(s)	30, 131, 147, 382, 724, 1213, 1334, 1849
AcoI	YGGCCR	2 cut(s)	583, 1853
AcsI	RAATTY	3 cut(s)	795, 1322, 2769
AcuI	CTGAAG	1 cut(s)	2385
AcyI	GRCGYC	1 cut(s)	60
AflII	CTTAAG	1 cut(s)	1415
AflIII	ACRYGT	2 cut(s)	409, 1098
AgsI	TTSAA	9 cut(s)	713, 826, 1469, 1505, 1754, 1913, 2267, 2409, 2650
AhdI	GACNNNNNGTC	1 cut(s)	2821
AjnI	CCWGG	4 cut(s)	54, 86, 580, 2065
AjuI	GAANNNNNNNTTGG	2 cut(s)	1923, 1955
AleI	CACNNNNGTG	1 cut(s)	1650
Alw21I	GWGCWC	7 cut(s)	28, 226, 750, 1292, 2333, 2454, 2852
Alw26I	GTCTC	2 cut(s)	1191, 1341
Alw44I	GTGCAC	1 cut(s)	2450
Ama87I	CYCGRG	1 cut(s)	1676
AoxI	GGCC	6 cut(s)	89, 217, 237, 583, 1116, 1853
ApaI	GGGCCC	1 cut(s)	241
ApaLI	GTGCAC	1 cut(s)	2450
ApeKI	GCWGC	4 cut(s)	1038, 1784, 2588, 2787
ApoI	RAATTY	3 cut(s)	795, 1322, 2769
AseI	ATTAAT	1 cut(s)	1623
Asp700I	GAANNNNTTC	2 cut(s)	1326, 2839
Asp718I	GGTACC	2 cut(s)	384, 2168
AspLEI	GCGC	2 cut(s)	1578, 1824
AspS9I	GGNCC	6 cut(s)	19, 90, 237, 238, 328, 726
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	1940, 2040
AvaI	CYCGRG	1 cut(s)	1676
AvaII	GGWCC	3 cut(s)	19, 328, 726
AxyI	CCTNAGG	2 cut(s)	469, 783
BaeGI	GKGCMC	4 cut(s)	241, 433, 2454, 2690
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BalI	TGGCCA	1 cut(s)	1855
BamHI	GGATCC	2 cut(s)	490, 2230
BanI	GGYRCC	3 cut(s)	384, 430, 2168
BanII	GRGCYC	5 cut(s)	28, 226, 241, 750, 1379
BarI	GAAGNNNNNNTAC	2 cut(s)	2161, 2193
BauI	CACGAG	1 cut(s)	2453
BbsI	GAAGAC	1 cut(s)	1539
Bbv12I	GWGCWC	7 cut(s)	28, 226, 750, 1292, 2333, 2454, 2852
BbvI	GCAGC	4 cut(s)	1025, 1771, 2600, 2799
BceAI	ACGGC	2 cut(s)	570, 671
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	4 cut(s)	56, 88, 582, 2067
BciVI	GTATCC	1 cut(s)	660
BclI	TGATCA	3 cut(s)	403, 661, 2796
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	1191, 1341
BfmI	CTRYAG	4 cut(s)	1192, 1389, 1828, 2753
BfrI	CTTAAG	1 cut(s)	1415
BfuAI	ACCTGC	1 cut(s)	2760
BfuI	GTATCC	1 cut(s)	660
BisI	GCNGC	5 cut(s)	1039, 1334, 1785, 2589, 2788
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	5 cut(s)	1040, 1335, 1786, 2590, 2789
BmcAI	AGTACT	2 cut(s)	632, 2164
Bme1390I	CCNGG	5 cut(s)	56, 88, 236, 582, 2067
Bme18I	GGWCC	3 cut(s)	19, 328, 726
BmeRI	GACNNNNNGTC	1 cut(s)	2821
BmeT110I	CYCGRG	1 cut(s)	1676
BmgT120I	GGNCC	6 cut(s)	19, 90, 237, 238, 328, 726
BmrFI	CCNGG	5 cut(s)	56, 88, 236, 582, 2067
BpiI	GAAGAC	1 cut(s)	1539
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	1 cut(s)	2041
Bpu10I	CCTNAGC	2 cut(s)	420, 694
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	6 cut(s)	357, 374, 830, 1480, 2134, 2437
BpuMI	CCSGG	1 cut(s)	236
BsaBI	GATNNNNATC	2 cut(s)	189, 258
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	6 cut(s)	63, 93, 653, 1795, 1921, 2194
BsaWI	WCCGGW	1 cut(s)	262
Bse21I	CCTNAGG	2 cut(s)	469, 783
Bse3DI	GCAATG	4 cut(s)	880, 988, 2099, 2226
Bse8I	GATNNNNATC	2 cut(s)	189, 258
BseBI	CCWGG	4 cut(s)	56, 88, 582, 2067
BseDI	CCNNGG	6 cut(s)	63, 93, 653, 1795, 1921, 2194
BseGI	GGATG	8 cut(s)	304, 308, 525, 556, 2129, 2247, 2401, 2716
BseJI	GATNNNNATC	2 cut(s)	189, 258
BseMI	GCAATG	4 cut(s)	880, 988, 2099, 2226
BseMII	CTCAG	9 cut(s)	434, 483, 683, 774, 776, 968, 1716, 1903, 2835
BseRI	GAGGAG	5 cut(s)	156, 225, 228, 2339, 2584
BseSI	GKGCMC	4 cut(s)	241, 433, 2454, 2690
BseXI	GCAGC	4 cut(s)	1025, 1771, 2600, 2799
BseYI	CCCAGC	4 cut(s)	1157, 1766, 2051, 2084
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	6 cut(s)	91, 219, 239, 585, 1118, 1855
BshNI	GGYRCC	3 cut(s)	384, 430, 2168
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	7 cut(s)	28, 226, 750, 1292, 2333, 2454, 2852
BsiHKCI	CYCGRG	1 cut(s)	1676
BsiSI	CCGG	4 cut(s)	207, 235, 263, 2204
BslFI	GGGAC	5 cut(s)	336, 1159, 1500, 2091, 2478
BsmAI	GTCTC	2 cut(s)	1191, 1341
BsmFI	GGGAC	5 cut(s)	336, 1159, 1500, 2091, 2478
BsmI	GAATGC	5 cut(s)	306, 1511, 1642, 2388, 2765
BsnI	GGCC	6 cut(s)	91, 219, 239, 585, 1118, 1855
BsoBI	CYCGRG	1 cut(s)	1676
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	8 cut(s)	30, 131, 147, 382, 724, 1213, 1334, 1849
BspANI	GGCC	6 cut(s)	91, 219, 239, 585, 1118, 1855
BspCNI	CTCAG	9 cut(s)	433, 482, 682, 775, 775, 967, 1717, 1902, 2836
BspHI	TCATGA	3 cut(s)	193, 2352, 2812
BspMAI	CTGCAG	2 cut(s)	1196, 2757
BspMI	ACCTGC	1 cut(s)	2760
BspQI	GCTCTTC	3 cut(s)	231, 1007, 2845
BspT107I	GGYRCC	3 cut(s)	384, 430, 2168
BspTI	CTTAAG	1 cut(s)	1415
BsrDI	GCAATG	4 cut(s)	880, 988, 2099, 2226
BssECI	CCNNGG	6 cut(s)	63, 93, 653, 1795, 1921, 2194
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	2453
BssT1I	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
Bst2BI	CACGAG	1 cut(s)	2453
Bst2UI	CCWGG	4 cut(s)	56, 88, 582, 2067
Bst4CI	ACNGT	7 cut(s)	1352, 1456, 1599, 1652, 1883, 2313, 2449
Bst6I	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2065, 2845
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	1415
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstC8I	GCNNGC	4 cut(s)	204, 1186, 1246, 1853
BstDSI	CCRYGG	2 cut(s)	63, 653
BstF5I	GGATG	8 cut(s)	304, 308, 525, 556, 2129, 2247, 2401, 2716
BstHHI	GCGC	2 cut(s)	1578, 1824
BstMAI	GTCTC	2 cut(s)	1191, 1341
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	6 cut(s)	604, 812, 1023, 1163, 1212, 2744
BstNI	CCWGG	4 cut(s)	56, 88, 582, 2067
BstNSI	RCATGY	5 cut(s)	413, 1060, 1102, 1188, 1252
BstSCI	CCNGG	5 cut(s)	54, 86, 234, 580, 2065
BstSFI	CTRYAG	4 cut(s)	1192, 1389, 1828, 2753
BstSLI	GKGCMC	4 cut(s)	241, 433, 2454, 2690
BstV1I	GCAGC	4 cut(s)	1025, 1771, 2600, 2799
BstV2I	GAAGAC	1 cut(s)	1539
BstX2I	RGATCY	8 cut(s)	102, 490, 861, 1399, 1515, 2095, 2230, 2619
BstYI	RGATCY	8 cut(s)	102, 490, 861, 1399, 1515, 2095, 2230, 2619
Bsu36I	CCTNAGG	2 cut(s)	469, 783
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	6 cut(s)	91, 219, 239, 585, 1118, 1855
BtgI	CCRYGG	2 cut(s)	63, 653
BtgZI	GCGATG	1 cut(s)	962
BtsCI	GGATG	8 cut(s)	304, 308, 525, 556, 2129, 2247, 2401, 2716
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	4 cut(s)	377, 441, 947, 1296
BveI	ACCTGC	1 cut(s)	2760
Cac8I	GCNNGC	4 cut(s)	204, 1186, 1246, 1853
CciI	TCATGA	3 cut(s)	193, 2352, 2812
CfoI	GCGC	2 cut(s)	1578, 1824
Cfr13I	GGNCC	6 cut(s)	19, 90, 237, 238, 328, 726
CseI	GACGC	1 cut(s)	68
CspCI	CAANNNNNGTGG	4 cut(s)	1053, 1088, 1584, 1619
DriI	GACNNNNNGTC	1 cut(s)	2821
EaeI	YGGCCR	2 cut(s)	583, 1853
Eam1104I	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2065, 2845
Eam1105I	GACNNNNNGTC	1 cut(s)	2821
EarI	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2065, 2845
Ecl136II	GAGCTC	3 cut(s)	26, 224, 748
Eco130I	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
Eco147I	AGGCCT	1 cut(s)	1118
Eco24I	GRGCYC	5 cut(s)	28, 226, 241, 750, 1379
Eco32I	GATATC	2 cut(s)	76, 2605
Eco47I	GGWCC	3 cut(s)	19, 328, 726
Eco53kI	GAGCTC	3 cut(s)	26, 224, 748
Eco57I	CTGAAG	1 cut(s)	2385
Eco81I	CCTNAGG	2 cut(s)	469, 783
Eco88I	CYCGRG	1 cut(s)	1676
EcoICRI	GAGCTC	3 cut(s)	26, 224, 748
EcoRII	CCWGG	4 cut(s)	54, 86, 580, 2065
EcoRV	GATATC	2 cut(s)	76, 2605
EcoT14I	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
EcoT22I	ATGCAT	6 cut(s)	306, 895, 978, 1186, 1511, 2765
EcoT38I	GRGCYC	5 cut(s)	28, 226, 241, 750, 1379
ErhI	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
FalI	AAGNNNNNCTT	2 cut(s)	2219, 2251
FaqI	GGGAC	5 cut(s)	336, 1159, 1500, 2091, 2478
FauI	CCCGC	4 cut(s)	37, 138, 154, 1856
FauNDI	CATATG	1 cut(s)	994
FbaI	TGATCA	3 cut(s)	403, 661, 2796
FblI	GTMKAC	2 cut(s)	1080, 2522
Fnu4HI	GCNGC	5 cut(s)	1039, 1334, 1785, 2589, 2788
FokI	GGATG	8 cut(s)	291, 295, 532, 563, 2116, 2234, 2408, 2723
FriOI	GRGCYC	5 cut(s)	28, 226, 241, 750, 1379
Fsp4HI	GCNGC	5 cut(s)	1039, 1334, 1785, 2589, 2788
GlaI	GCGC	2 cut(s)	1577, 1823
GluI	GCNGC	5 cut(s)	1039, 1334, 1785, 2589, 2788
GsaI	CCCAGC	4 cut(s)	1161, 1770, 2055, 2088
GsuI	CTGGAG	1 cut(s)	2041
HaeIII	GGCC	6 cut(s)	91, 219, 239, 585, 1118, 1855
HapII	CCGG	4 cut(s)	207, 235, 263, 2204
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	1578, 1824
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	2 cut(s)	1576, 1822
HinP1I	GCGC	2 cut(s)	1576, 1822
HincII	GTYRAC	2 cut(s)	1260, 1879
HindII	GTYRAC	2 cut(s)	1260, 1879
HindIII	AAGCTT	3 cut(s)	820, 1470, 1901
HpaI	GTTAAC	1 cut(s)	1260
HpaII	CCGG	4 cut(s)	207, 235, 263, 2204
HphI	GGTGA	2 cut(s)	1940, 2040
Hpy99I	CGWCG	2 cut(s)	83, 155
HpyAV	CCTTC	3 cut(s)	872, 1442, 1925
HpyCH4III	ACNGT	7 cut(s)	1352, 1456, 1599, 1652, 1883, 2313, 2449
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	6 cut(s)	604, 812, 1023, 1163, 1212, 2744
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	2 cut(s)	1576, 1822
KpnI	GGTACC	2 cut(s)	388, 2172
Ksp22I	TGATCA	3 cut(s)	403, 661, 2796
KspAI	GTTAAC	1 cut(s)	1260
LguI	GCTCTTC	3 cut(s)	231, 1007, 2845
LmnI	GCTCC	9 cut(s)	31, 784, 1382, 1531, 1934, 1991, 2060, 2282, 2509
Lsp1109I	GCAGC	4 cut(s)	1025, 1771, 2600, 2799
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	2575
MflI	RGATCY	8 cut(s)	102, 490, 861, 1399, 1515, 2095, 2230, 2619
MlsI	TGGCCA	1 cut(s)	1855
MluNI	TGGCCA	1 cut(s)	1855
MlyI	GAGTC	6 cut(s)	404, 610, 1487, 1780, 1957, 2796
MmeI	TCCRAC	2 cut(s)	30, 2658
Mox20I	TGGCCA	1 cut(s)	1855
Mph1103I	ATGCAT	6 cut(s)	306, 895, 978, 1186, 1511, 2765
MroXI	GAANNNNTTC	2 cut(s)	1326, 2839
MscI	TGGCCA	1 cut(s)	1855
MseI	TTAA	7 cut(s)	357, 896, 1259, 1416, 1623, 1776, 2672
MslI	CAYNNNNRTG	3 cut(s)	678, 981, 1650
Msp20I	TGGCCA	1 cut(s)	1855
MspA1I	CMGCKG	1 cut(s)	1851
MspCI	CTTAAG	1 cut(s)	1415
MspI	CCGG	4 cut(s)	207, 235, 263, 2204
MspR9I	CCNGG	5 cut(s)	56, 88, 236, 582, 2067
Mva1269I	GAATGC	5 cut(s)	306, 1511, 1642, 2388, 2765
MvaI	CCWGG	4 cut(s)	56, 88, 582, 2067
MwoI	GCNNNNNNNGC	6 cut(s)	604, 812, 1023, 1163, 1212, 2744
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	63
NdeI	CATATG	1 cut(s)	994
NmeAIII	GCCGAG	1 cut(s)	245
NsiI	ATGCAT	6 cut(s)	306, 895, 978, 1186, 1511, 2765
NspI	RCATGY	5 cut(s)	413, 1060, 1102, 1188, 1252
OliI	CACNNNNGTG	1 cut(s)	1650
PaeI	GCATGC	1 cut(s)	1188
PagI	TCATGA	3 cut(s)	193, 2352, 2812
PceI	AGGCCT	1 cut(s)	1118
PciI	ACATGT	2 cut(s)	409, 1098
PciSI	GCTCTTC	3 cut(s)	231, 1007, 2845
PctI	GAATGC	5 cut(s)	306, 1511, 1642, 2388, 2765
PdmI	GAANNNNTTC	2 cut(s)	1326, 2839
PfeI	GAWTC	7 cut(s)	366, 1411, 1842, 1913, 2045, 2285, 2498
PflMI	CCANNNNNTGG	2 cut(s)	500, 1973
PkrI	GCNGC	5 cut(s)	1040, 1335, 1786, 2590, 2789
PleI	GAGTC	6 cut(s)	403, 610, 1487, 1779, 1956, 2796
PpsI	GAGTC	6 cut(s)	403, 610, 1487, 1779, 1956, 2796
PscI	ACATGT	2 cut(s)	409, 1098
PshBI	ATTAAT	1 cut(s)	1623
Psp124BI	GAGCTC	3 cut(s)	28, 226, 750
Psp6I	CCWGG	4 cut(s)	54, 86, 580, 2065
PspFI	CCCAGC	4 cut(s)	1157, 1766, 2051, 2084
PspGI	CCWGG	4 cut(s)	54, 86, 580, 2065
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	6 cut(s)	19, 90, 237, 238, 328, 726
PsrI	GAACNNNNNNTAC	2 cut(s)	2301, 2333
PstI	CTGCAG	2 cut(s)	1196, 2757
PsuI	RGATCY	8 cut(s)	102, 490, 861, 1399, 1515, 2095, 2230, 2619
RseI	CAYNNNNRTG	3 cut(s)	678, 981, 1650
SacI	GAGCTC	3 cut(s)	28, 226, 750
SapI	GCTCTTC	3 cut(s)	231, 1007, 2845
SaqAI	TTAA	7 cut(s)	357, 896, 1259, 1416, 1623, 1776, 2672
SatI	GCNGC	5 cut(s)	1039, 1334, 1785, 2589, 2788
Sau96I	GGNCC	6 cut(s)	19, 90, 237, 238, 328, 726
SbfI	CCTGCAGG	1 cut(s)	2757
ScaI	AGTACT	2 cut(s)	632, 2164
SchI	GAGTC	6 cut(s)	404, 610, 1487, 1780, 1957, 2796
ScrFI	CCNGG	5 cut(s)	56, 88, 236, 582, 2067
SdaI	CCTGCAGG	1 cut(s)	2757
SfcI	CTRYAG	4 cut(s)	1192, 1389, 1828, 2753
SinI	GGWCC	3 cut(s)	19, 328, 726
SmiMI	CAYNNNNRTG	3 cut(s)	678, 981, 1650
SmlI	CTYRAG	7 cut(s)	372, 389, 809, 1415, 1495, 2149, 2416
SmoI	CTYRAG	7 cut(s)	372, 389, 809, 1415, 1495, 2149, 2416
SphI	GCATGC	1 cut(s)	1188
Sse8387I	CCTGCAGG	1 cut(s)	2757
SseBI	AGGCCT	1 cut(s)	1118
SsiI	CCGC	8 cut(s)	30, 131, 147, 382, 724, 1213, 1334, 1849
SspI	AATATT	1 cut(s)	1760
SstI	GAGCTC	3 cut(s)	28, 226, 750
StuI	AGGCCT	1 cut(s)	1118
StyD4I	CCNGG	5 cut(s)	54, 86, 234, 580, 2065
StyI	CCWWGG	5 cut(s)	63, 93, 1795, 1921, 2194
TaaI	ACNGT	7 cut(s)	1352, 1456, 1599, 1652, 1883, 2313, 2449
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	5 cut(s)	78, 398, 1111, 1996, 2296
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	6 cut(s)	412, 457, 630, 1234, 2060, 2162
TauI	GCSGC	1 cut(s)	1336
TfiI	GAWTC	7 cut(s)	366, 1411, 1842, 1913, 2045, 2285, 2498
Tru1I	TTAA	7 cut(s)	357, 896, 1259, 1416, 1623, 1776, 2672
Tru9I	TTAA	7 cut(s)	357, 896, 1259, 1416, 1623, 1776, 2672
TscAI	CASTG	4 cut(s)	384, 441, 954, 1303
TseI	GCWGC	4 cut(s)	1038, 1784, 2588, 2787
TspDTI	ATGAA	8 cut(s)	497, 891, 1022, 1832, 2037, 2178, 2714, 2801
TspGWI	ACGGA	1 cut(s)	2316
TspRI	CASTG	4 cut(s)	384, 441, 954, 1303
Van91I	CCANNNNNTGG	2 cut(s)	500, 1973
Vha464I	CTTAAG	1 cut(s)	1415
VneI	GTGCAC	1 cut(s)	2450
VpaK11BI	GGWCC	3 cut(s)	19, 328, 726
VspI	ATTAAT	1 cut(s)	1623
XapI	RAATTY	3 cut(s)	795, 1322, 2769
XbaI	TCTAGA	3 cut(s)	1318, 1741, 2375
XceI	RCATGY	5 cut(s)	413, 1060, 1102, 1188, 1252
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1069, 2472
XmiI	GTMKAC	2 cut(s)	1080, 2522
XmnI	GAANNNNTTC	2 cut(s)	1326, 2839
ZrmI	AGTACT	2 cut(s)	632, 2164
Zsp2I	ATGCAT	6 cut(s)	306, 895, 978, 1186, 1511, 2765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.