Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007351

Physical Location & Seq

Genomic Coordinates Forward (+)

5629785 .. 5633697

Gene Structure 3913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G006610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGTCCGACCCCGAAGAGGACCGAGCTCCCGCCATTTTCCCCAAGTCAAAGAACCTGGACGCCATGGACTTTGATATCGACGTTTCCTGGCCCTTGGATCAGATCCAGTTCCTCTCTAATCCCACCTCCCCGCTTCTCTTCTCCCCCGCCGACGACCCCTGTTCCCCTCTCTGGGCCTTTCCCGATGTCGATCATGACAAGCTCGCCGGCGGAGGAGGCCGAGCTCTTCCCGACCCGGCCCAATTCGTTTCCGATGCTAATCCGGTTGTGGAGAAGCCAAGAGAGAATGAGGACAACAGAATGCTTCCATCCCCATTTTCGGGACTGGACCCAAATCCAGATGGTTATTTTCTAATTAAGGAGAGAATCACTCAAGCACTGCGGTACCTCAAGGAGTCGAGTGATCAACATGTACTAGCTCAGGTTTGGGCACCGGTGAAGGATGGAAGTCGGTATGTACTCACAACCTCAGGGCAACCCTTTGTGCTGGATCCACATGATGGACTTCATCAGTATAGGATGGTTTCTCTGATGTATATGTTTTCTGTGGATGGGGAGAATGATGGAGTGCTTGGACTTCCTGGCCGTGTTTTCCAGCAAAAGATGCCCGAATGGACTCCAAATGTTCAGTACTACTCCATCAAAGAGTATCCACGGCTTGATCATGCTCAGCACTACAATGTTCAGGGAACCTTAGCTTTGCCCATATTTGAACCCTCTGGGCGGTCCTGTATTGGTGTAATTGAGCTCATAATGACTTCTCAGAAGATCAACTATGCTCCTGAGGTTGATAAAATTTGCAAAGCACTTGAGGCAGTAAGCTTGAAAAGTTCAGAGATATTGGATCATACAAGCACACAGATCCAGATACGCAATGAAGGTCGCCAAAATGCATTAACTGAAATCTTGGAGATACTGACAATGGTATGTGAAACTCATAAATTACCACTGGCTCAGACATGGGTTCCATGTATGCATCGCAATGTTTTGGCTTATGGTGGTGGCATGAAGAAGAGCTGTACAAGCTTTGATGGTAGCTGCATGGAACAGGTCTGCATGTCCACAACAGATGTGGCAGTCTACATTGTAGATGCTCACATGTGGGGTTTTCGAGAGGCCTGTGTAGAGCATCACTTACAAAAGGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCGTAATGCATGCTTCTGCAGAGACATTAGCCAGTTCCGCAAAACAGAATACCCTTTAGTACACTACGCACGCATGTTTGAGTTAACCAGCTCATTTGCAATCTGTTTACAGAGCACTCACACTGGAAATGATGATTACATTCTAGAATTTTTTCTGCCGCCTAGCATCAGAGACAGTTGTGAACAGCAGACTTTATTGGGCTCCATATTGGCTATAGTGAAAGATCATTGCCAGAATCTTAAGGTTGCTTCTGGAATTGGACTTGCAGAGGAAGGAACAGTTGAGATTGTTCAAGCTTCTATAAATGAGGGACTTGACTCAAGACTTGAATGCATACAGATACCCTGTTCAATGGAGCCACTTCCAGGGTCTTCCTTACCTAACAGAGAAGAGACGGTGCGCCTAAATCCAGCAAAACCACAGTTAATGGTGGACATTGATGAGAGGAATGCAGTTCACAACGGTGGAAAAAACAACATTTCTGTTCCCGAGAATAAAGACATAAAAAAGACATCAGAGAGGAAGCGTGGGAAAACTGAGAAATCAATTAGTCTAGAGGTTCTTCAACAATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGAATCTCCCGCTGGCCATCTCGCAAGATCAACAAGGTCAACCGTTCTCTCAGTAAGCTAAAGCTTGTAATTGAATCTGTCCAAGGTGGTGAAGGAGCATTTGGTTTGAGTCCTCTTACTACAAGTCCACTTACTGGTGCTGTTGGCTCCATTTCTCGACCTTATACAAGCTCTCAACCCTATGAAGTTCAGGGAGAAAAGAAAGATTCACCCAGCTCTAGTACACCAGGAAGAGAGGGACAGGCTGGGATAGAAGATCCATTGCAAGATATTGGTAATGGCTCAAACTCATCCAAAACAGGTAGTGGCTCAAGGGAGGCGAGTACTGGTACCCCTACTTCTCATGGTTCATGCCAAGGTAGTCCGGCAAATGGAAGTGCAATGGTAAAGGACCCCTTTGTTTCTTCCTTCCAGGAGCAATTCGTTGAAGTTGATCGCTCCCCTGAATCAGCATTTCGACCACCAGAGGAACTGTATGTACCAGTTCCGTGTTCAATACCAGATGCTCTCCTCATGACAGAACCTGAAGAACCATCTAGAGGAATGCTACTAGAGGATGCTGGAAGTTCAAAAGACTTGAGAAATCTGTGTCCTTTTACCGATATAACTGTGCATGAGCAAGTTCCAGAAATTTTCTGGACAGACCCCCCATGTCCTGATTCGGCTCCTAACCAATCCATGTCTACTCTTGCTTACACAATGCCTCATAACACGTCTTTACAAGAAATGAGGAGTGTAACCATAAAGGCAGCATATAAAGATGATATCATTAGGTTTCGGATCTCTATGAGTTCTTGTATAGTGGATTTGAAAGAGGAAGTGGCAAAGAGATTAAAGTTGGAAGTGGGCACATTTGATATGAAGTATATGGATGATGACCTTGAGTGGGTTCTGATAGCTTGTGATGCAGACCTGCAGGAATGCATGGAAATTTGCAGATCATCAGGCAGCAATATGATCAGAGTCTCTGTTCATGACATTCTGTCCAATCTTGGAAGCTCTTCTGAGAGCACTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010118 GO:0010167 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042126 GO:0042128 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071941 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001057 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

949

Amino Acids

104.82

Weight (kDa)

5.1

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	138 - 272	8e-06	NLP protein GAF domain
GAF_NLP	PF22922	290 - 472	1.1e-77	NLP protein GAF domain
RWP-RK	PF02042	574 - 621	2.1e-23	RWP-RK domain
PB1	PF00564	855 - 935	3.9e-20	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64530 AT1G64530 AT4G24020 AT4G24020
fragaria_vesca	FvH4_5g11570 FvH4_5g11570
malus_domestica	MD06G1111900.v1.1 MD14G1133200.v1.1 MD14G1133300.v1.1
prunus_persica	Prupe.5G124900_v2.0.a1 Prupe.5G124900_v2.0.a1 Prupe.5G125000_v2.0.a1
pyrus_communis	pycom06g10490
rosa_chinensis	RchiOBHm_Chr7g0186181
rosa_laevigata	RLG00000004858
rosa_multiflora	Rmu_sc0009528.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268340
rosa_rugosa	Rorug06G0472600 Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068900 Rh7BG084800 Rh7CG079200 Rh7DG079400
rosa_wichuraiana	Rw7G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2748
Acc65I	GGTACC	2 cut(s)	384, 2156
AccB1I	GGYRCC	3 cut(s)	384, 430, 2156
AccB7I	CCANNNNNTGG	2 cut(s)	500, 1961
AccI	GTMKAC	2 cut(s)	1080, 2510
AciI	CCGC	9 cut(s)	30, 131, 147, 210, 382, 724, 1213, 1334, 1837
AclWI	GGATC	8 cut(s)	97, 105, 485, 498, 852, 856, 2078, 2615
AcoI	YGGCCR	2 cut(s)	583, 1841
AcsI	RAATTY	4 cut(s)	795, 1322, 2457, 2757
AcuI	CTGAAG	1 cut(s)	2373
AcyI	GRCGYC	1 cut(s)	60
AflII	CTTAAG	1 cut(s)	1415
AflIII	ACRYGT	3 cut(s)	409, 1098, 2538
AgeI	ACCGGT	1 cut(s)	433
AhdI	GACNNNNNGTC	1 cut(s)	2809
AjiI	CACGTC	1 cut(s)	2541
AjnI	CCWGG	6 cut(s)	54, 86, 580, 1540, 2053, 2238
AjuI	GAANNNNNNNTTGG	2 cut(s)	1911, 1943
AleI	CACNNNNGTG	1 cut(s)	1638
Alw21I	GWGCWC	5 cut(s)	28, 226, 750, 1292, 2840
Alw26I	GTCTC	4 cut(s)	1191, 1341, 1562, 2797
AlwI	GGATC	8 cut(s)	97, 105, 485, 498, 852, 856, 2078, 2615
AlwNI	CAGNNNCTG	1 cut(s)	2351
Ama87I	CYCGRG	1 cut(s)	1664
AoxI	GGCC	7 cut(s)	89, 174, 217, 237, 583, 1116, 1841
ApeKI	GCWGC	5 cut(s)	1038, 1772, 1822, 2576, 2775
ApoI	RAATTY	4 cut(s)	795, 1322, 2457, 2757
AsiGI	ACCGGT	1 cut(s)	433
Asp700I	GAANNNNTTC	2 cut(s)	1326, 2827
Asp718I	GGTACC	2 cut(s)	384, 2156
AspLEI	GCGC	2 cut(s)	1578, 1812
AspS9I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2218
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	448, 1928, 2028
AvaI	CYCGRG	1 cut(s)	1664
AvaII	GGWCC	4 cut(s)	19, 328, 726, 2218
AxyI	CCTNAGG	2 cut(s)	469, 783
BaeGI	GKGCMC	2 cut(s)	433, 2678
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BalI	TGGCCA	1 cut(s)	1843
BamHI	GGATCC	1 cut(s)	490
BanI	GGYRCC	3 cut(s)	384, 430, 2156
BanII	GRGCYC	4 cut(s)	28, 226, 750, 1379
BarI	GAAGNNNNNNTAC	2 cut(s)	2149, 2181
BbsI	GAAGAC	1 cut(s)	1539
Bbv12I	GWGCWC	5 cut(s)	28, 226, 750, 1292, 2840
BbvI	GCAGC	5 cut(s)	1025, 1759, 1834, 2588, 2787
BceAI	ACGGC	2 cut(s)	570, 671
BciT130I	CCWGG	6 cut(s)	56, 88, 582, 1542, 2055, 2240
BciVI	GTATCC	1 cut(s)	660
BclI	TGATCA	3 cut(s)	403, 661, 2784
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	4 cut(s)	1191, 1341, 1562, 2797
BfaI	CTAG	7 cut(s)	416, 1319, 1338, 1730, 2046, 2364, 2378
BfmI	CTRYAG	4 cut(s)	1192, 1389, 1816, 2741
BfrI	CTTAAG	1 cut(s)	1415
BfuAI	ACCTGC	1 cut(s)	2748
BfuI	GTATCC	1 cut(s)	660
BisI	GCNGC	6 cut(s)	1039, 1334, 1773, 1823, 2577, 2776
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	6 cut(s)	1040, 1335, 1774, 1824, 2578, 2777
BmcAI	AGTACT	2 cut(s)	632, 2152
Bme1390I	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2055, 2240
Bme18I	GGWCC	4 cut(s)	19, 328, 726, 2218
BmeRI	GACNNNNNGTC	1 cut(s)	2809
BmeT110I	CYCGRG	1 cut(s)	1664
BmgBI	CACGTC	1 cut(s)	2541
BmgT120I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2218
BmrFI	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2055, 2240
BpiI	GAAGAC	1 cut(s)	1539
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
Bpu10I	CCTNAGC	2 cut(s)	420, 694
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	7 cut(s)	357, 374, 830, 1480, 2122, 2425, 2729
BpuMI	CCSGG	1 cut(s)	236
BsaBI	GATNNNNATC	2 cut(s)	189, 258
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	7 cut(s)	63, 93, 653, 1541, 1783, 1909, 2182
BsaWI	WCCGGW	2 cut(s)	262, 433
Bse118I	RCCGGY	2 cut(s)	206, 433
Bse1I	ACTGG	8 cut(s)	106, 330, 954, 1207, 1303, 1966, 2158, 2309
Bse21I	CCTNAGG	2 cut(s)	469, 783
Bse3DI	GCAATG	5 cut(s)	880, 988, 1402, 2087, 2214
Bse8I	GATNNNNATC	2 cut(s)	189, 258
BseBI	CCWGG	6 cut(s)	56, 88, 582, 1542, 2055, 2240
BseDI	CCNNGG	7 cut(s)	63, 93, 653, 1541, 1783, 1909, 2182
BseGI	GGATG	7 cut(s)	308, 448, 525, 556, 2117, 2389, 2704
BseJI	GATNNNNATC	2 cut(s)	189, 258
BseMI	GCAATG	5 cut(s)	880, 988, 1402, 2087, 2214
BseNI	ACTGG	8 cut(s)	106, 330, 954, 1207, 1303, 1966, 2158, 2309
BseRI	GAGGAG	3 cut(s)	228, 2327, 2572
BseSI	GKGCMC	2 cut(s)	433, 2678
BseXI	GCAGC	5 cut(s)	1025, 1759, 1834, 2588, 2787
BseYI	CCCAGC	4 cut(s)	1157, 1754, 2039, 2072
BshFI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1843
BshNI	GGYRCC	3 cut(s)	384, 430, 2156
BshTI	ACCGGT	1 cut(s)	433
BsiHKAI	GWGCWC	5 cut(s)	28, 226, 750, 1292, 2840
BsiHKCI	CYCGRG	1 cut(s)	1664
BsiSI	CCGG	5 cut(s)	207, 236, 263, 434, 2192
BslFI	GGGAC	4 cut(s)	336, 1159, 1500, 2079
BsmAI	GTCTC	4 cut(s)	1191, 1341, 1562, 2797
BsmBI	CGTCTC	1 cut(s)	1562
BsmFI	GGGAC	4 cut(s)	336, 1159, 1500, 2079
BsmI	GAATGC	5 cut(s)	306, 1511, 1630, 2376, 2753
BsnI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1843
BsoBI	CYCGRG	1 cut(s)	1664
Bsp1286I	GDGCHC	8 cut(s)	28, 226, 433, 750, 1292, 1379, 2678, 2840
Bsp1407I	TGTACA	1 cut(s)	1019
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	9 cut(s)	30, 131, 147, 210, 382, 724, 1213, 1334, 1837
BspANI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1843
BspHI	TCATGA	3 cut(s)	193, 2340, 2800
BspMAI	CTGCAG	2 cut(s)	1196, 2745
BspMI	ACCTGC	1 cut(s)	2748
BspPI	GGATC	8 cut(s)	97, 105, 485, 498, 852, 856, 2078, 2615
BspQI	GCTCTTC	3 cut(s)	231, 1007, 2833
BspT107I	GGYRCC	3 cut(s)	384, 430, 2156
BspTI	CTTAAG	1 cut(s)	1415
BsrDI	GCAATG	5 cut(s)	880, 988, 1402, 2087, 2214
BsrFI	RCCGGY	2 cut(s)	206, 433
BsrGI	TGTACA	1 cut(s)	1019
BsrI	ACTGG	8 cut(s)	106, 330, 954, 1207, 1303, 1966, 2158, 2309
BssAI	RCCGGY	2 cut(s)	206, 433
BssECI	CCNNGG	7 cut(s)	63, 93, 653, 1541, 1783, 1909, 2182
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	5 cut(s)	63, 93, 1783, 1909, 2182
Bst2UI	CCWGG	6 cut(s)	56, 88, 582, 1542, 2055, 2240
Bst4CI	ACNGT	8 cut(s)	1352, 1456, 1573, 1599, 1640, 1871, 2301, 2437
Bst6I	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2053, 2833
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	1415
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstAUI	TGTACA	1 cut(s)	1019
BstC8I	GCNNGC	5 cut(s)	204, 208, 1186, 1246, 1841
BstDSI	CCRYGG	2 cut(s)	63, 653
BstF5I	GGATG	7 cut(s)	308, 448, 525, 556, 2117, 2389, 2704
BstHHI	GCGC	2 cut(s)	1578, 1812
BstMAI	GTCTC	4 cut(s)	1191, 1341, 1562, 2797
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 604, 812, 1023, 1163, 1212, 2732
BstNI	CCWGG	6 cut(s)	56, 88, 582, 1542, 2055, 2240
BstNSI	RCATGY	5 cut(s)	413, 1060, 1102, 1188, 1252
BstSCI	CCNGG	7 cut(s)	54, 86, 234, 580, 1540, 2053, 2238
BstSFI	CTRYAG	4 cut(s)	1192, 1389, 1816, 2741
BstSLI	GKGCMC	2 cut(s)	433, 2678
BstV1I	GCAGC	5 cut(s)	1025, 1759, 1834, 2588, 2787
BstV2I	GAAGAC	1 cut(s)	1539
BstX2I	RGATCY	5 cut(s)	102, 490, 861, 2083, 2607
BstYI	RGATCY	5 cut(s)	102, 490, 861, 2083, 2607
Bsu36I	CCTNAGG	2 cut(s)	469, 783
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1843
BtgI	CCRYGG	2 cut(s)	63, 653
BtgZI	GCGATG	1 cut(s)	962
BtrI	CACGTC	1 cut(s)	2541
BtsCI	GGATG	7 cut(s)	308, 448, 525, 556, 2117, 2389, 2704
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	4 cut(s)	377, 947, 1296, 2838
BveI	ACCTGC	1 cut(s)	2748
Cac8I	GCNNGC	5 cut(s)	204, 208, 1186, 1246, 1841
CaiI	CAGNNNCTG	1 cut(s)	2351
CciI	TCATGA	3 cut(s)	193, 2340, 2800
CfoI	GCGC	2 cut(s)	1578, 1812
Cfr10I	RCCGGY	2 cut(s)	206, 433
Cfr13I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2218
CseI	GACGC	1 cut(s)	68
CspAI	ACCGGT	1 cut(s)	433
CspCI	CAANNNNNGTGG	2 cut(s)	1053, 1088
DriI	GACNNNNNGTC	1 cut(s)	2809
EaeI	YGGCCR	2 cut(s)	583, 1841
Eam1104I	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2053, 2833
Eam1105I	GACNNNNNGTC	1 cut(s)	2809
EarI	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2053, 2833
EciI	GGCGGA	1 cut(s)	225
Ecl136II	GAGCTC	3 cut(s)	26, 224, 748
Eco130I	CCWWGG	5 cut(s)	63, 93, 1783, 1909, 2182
Eco147I	AGGCCT	1 cut(s)	1118
Eco24I	GRGCYC	4 cut(s)	28, 226, 750, 1379
Eco32I	GATATC	2 cut(s)	76, 2593
Eco47I	GGWCC	4 cut(s)	19, 328, 726, 2218
Eco53kI	GAGCTC	3 cut(s)	26, 224, 748
Eco57I	CTGAAG	1 cut(s)	2373
Eco81I	CCTNAGG	2 cut(s)	469, 783
Eco88I	CYCGRG	1 cut(s)	1664
EcoICRI	GAGCTC	3 cut(s)	26, 224, 748
EcoO109I	RGGNCCY	1 cut(s)	2218
EcoRII	CCWGG	6 cut(s)	54, 86, 580, 1540, 2053, 2238
EcoRV	GATATC	2 cut(s)	76, 2593
EcoT14I	CCWWGG	5 cut(s)	63, 93, 1783, 1909, 2182
EcoT22I	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2753
EcoT38I	GRGCYC	4 cut(s)	28, 226, 750, 1379
ErhI	CCWWGG	5 cut(s)	63, 93, 1783, 1909, 2182
Esp3I	CGTCTC	1 cut(s)	1562
FalI	AAGNNNNNCTT	2 cut(s)	2207, 2239
FaqI	GGGAC	4 cut(s)	336, 1159, 1500, 2079
FauI	CCCGC	4 cut(s)	37, 138, 154, 1844
FbaI	TGATCA	3 cut(s)	403, 661, 2784
FblI	GTMKAC	2 cut(s)	1080, 2510
Fnu4HI	GCNGC	6 cut(s)	1039, 1334, 1773, 1823, 2577, 2776
FokI	GGATG	7 cut(s)	295, 455, 532, 563, 2104, 2396, 2711
FriOI	GRGCYC	4 cut(s)	28, 226, 750, 1379
Fsp4HI	GCNGC	6 cut(s)	1039, 1334, 1773, 1823, 2577, 2776
FspBI	CTAG	7 cut(s)	416, 1319, 1338, 1730, 2046, 2364, 2378
GlaI	GCGC	2 cut(s)	1577, 1811
GluI	GCNGC	6 cut(s)	1039, 1334, 1773, 1823, 2577, 2776
GsaI	CCCAGC	4 cut(s)	1161, 1758, 2043, 2076
HaeIII	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1843
HapII	CCGG	5 cut(s)	207, 236, 263, 434, 2192
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	1578, 1812
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	2 cut(s)	1576, 1810
HinP1I	GCGC	2 cut(s)	1576, 1810
HincII	GTYRAC	2 cut(s)	1260, 1867
HindII	GTYRAC	2 cut(s)	1260, 1867
HindIII	AAGCTT	4 cut(s)	820, 1024, 1470, 1889
HpaI	GTTAAC	1 cut(s)	1260
HpaII	CCGG	5 cut(s)	207, 236, 263, 434, 2192
HphI	GGTGA	3 cut(s)	448, 1928, 2028
Hpy99I	CGWCG	2 cut(s)	83, 155
HpyAV	CCTTC	5 cut(s)	433, 872, 1442, 1913, 2245
HpyCH4III	ACNGT	8 cut(s)	1352, 1456, 1573, 1599, 1640, 1871, 2301, 2437
HpyCH4IV	ACGT	2 cut(s)	81, 2540
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 604, 812, 1023, 1163, 1212, 2732
HpySE526I	ACGT	2 cut(s)	81, 2540
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	2 cut(s)	1576, 1810
KpnI	GGTACC	2 cut(s)	388, 2160
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Ksp22I	TGATCA	3 cut(s)	403, 661, 2784
KspAI	GTTAAC	1 cut(s)	1260
LguI	GCTCTTC	3 cut(s)	231, 1007, 2833
LmnI	GCTCC	9 cut(s)	31, 784, 1382, 1531, 1922, 1979, 2242, 2270, 2497
Lsp1109I	GCAGC	5 cut(s)	1025, 1759, 1834, 2588, 2787
MaeI	CTAG	7 cut(s)	416, 1319, 1338, 1730, 2046, 2364, 2378
MaeII	ACGT	2 cut(s)	81, 2540
MaeIII	GTNAC	1 cut(s)	2563
MflI	RGATCY	5 cut(s)	102, 490, 861, 2083, 2607
MhlI	GDGCHC	8 cut(s)	28, 226, 433, 750, 1292, 1379, 2678, 2840
MlsI	TGGCCA	1 cut(s)	1843
MluNI	TGGCCA	1 cut(s)	1843
MlyI	GAGTC	6 cut(s)	404, 610, 1487, 1768, 1945, 2799
MmeI	TCCRAC	2 cut(s)	30, 2646
Mox20I	TGGCCA	1 cut(s)	1843
Mph1103I	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2753
MreI	CGCCGGCG	1 cut(s)	206
MroNI	GCCGGC	1 cut(s)	206
MroXI	GAANNNNTTC	2 cut(s)	1326, 2827
MscI	TGGCCA	1 cut(s)	1843
MseI	TTAA	7 cut(s)	357, 896, 1259, 1416, 1601, 1764, 2660
MslI	CAYNNNNRTG	3 cut(s)	678, 981, 1638
Msp20I	TGGCCA	1 cut(s)	1843
MspA1I	CMGCKG	1 cut(s)	1839
MspCI	CTTAAG	1 cut(s)	1415
MspI	CCGG	5 cut(s)	207, 236, 263, 434, 2192
MspR9I	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2055, 2240
Mva1269I	GAATGC	5 cut(s)	306, 1511, 1630, 2376, 2753
MvaI	CCWGG	6 cut(s)	56, 88, 582, 1542, 2055, 2240
MwoI	GCNNNNNNNGC	7 cut(s)	216, 604, 812, 1023, 1163, 1212, 2732
NaeI	GCCGGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	63
NgoMIV	GCCGGC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	245
NsiI	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2753
NspI	RCATGY	5 cut(s)	413, 1060, 1102, 1188, 1252
OliI	CACNNNNGTG	1 cut(s)	1638
PaeI	GCATGC	1 cut(s)	1188
PagI	TCATGA	3 cut(s)	193, 2340, 2800
PceI	AGGCCT	1 cut(s)	1118
PciI	ACATGT	2 cut(s)	409, 1098
PciSI	GCTCTTC	3 cut(s)	231, 1007, 2833
PctI	GAATGC	5 cut(s)	306, 1511, 1630, 2376, 2753
PdiI	GCCGGC	1 cut(s)	208
PdmI	GAANNNNTTC	2 cut(s)	1326, 2827
PfeI	GAWTC	7 cut(s)	366, 1411, 1830, 1901, 2033, 2273, 2486
PflMI	CCANNNNNTGG	2 cut(s)	500, 1961
PfoI	TCCNGGA	1 cut(s)	2238
PinAI	ACCGGT	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	1040, 1335, 1774, 1824, 2578, 2777
PleI	GAGTC	6 cut(s)	403, 610, 1487, 1767, 1944, 2798
PpsI	GAGTC	6 cut(s)	403, 610, 1487, 1767, 1944, 2798
PpuMI	RGGWCCY	1 cut(s)	2218
PscI	ACATGT	2 cut(s)	409, 1098
Psp124BI	GAGCTC	3 cut(s)	28, 226, 750
Psp5II	RGGWCCY	1 cut(s)	2218
Psp6I	CCWGG	6 cut(s)	54, 86, 580, 1540, 2053, 2238
PspFI	CCCAGC	4 cut(s)	1157, 1754, 2039, 2072
PspGI	CCWGG	6 cut(s)	54, 86, 580, 1540, 2053, 2238
PspPI	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2218
PspPPI	RGGWCCY	1 cut(s)	2218
PsrI	GAACNNNNNNTAC	2 cut(s)	2289, 2321
PstI	CTGCAG	2 cut(s)	1196, 2745
PstNI	CAGNNNCTG	1 cut(s)	2351
PsuI	RGATCY	5 cut(s)	102, 490, 861, 2083, 2607
RseI	CAYNNNNRTG	3 cut(s)	678, 981, 1638
SacI	GAGCTC	3 cut(s)	28, 226, 750
SapI	GCTCTTC	3 cut(s)	231, 1007, 2833
SaqAI	TTAA	7 cut(s)	357, 896, 1259, 1416, 1601, 1764, 2660
SatI	GCNGC	6 cut(s)	1039, 1334, 1773, 1823, 2577, 2776
Sau96I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2218
SbfI	CCTGCAGG	1 cut(s)	2745
ScaI	AGTACT	2 cut(s)	632, 2152
SchI	GAGTC	6 cut(s)	404, 610, 1487, 1768, 1945, 2799
ScrFI	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2055, 2240
SdaI	CCTGCAGG	1 cut(s)	2745
SduI	GDGCHC	8 cut(s)	28, 226, 433, 750, 1292, 1379, 2678, 2840
SfcI	CTRYAG	4 cut(s)	1192, 1389, 1816, 2741
SgrAI	CRCCGGYG	2 cut(s)	206, 433
SinI	GGWCC	4 cut(s)	19, 328, 726, 2218
SmiMI	CAYNNNNRTG	3 cut(s)	678, 981, 1638
SmlI	CTYRAG	8 cut(s)	372, 389, 809, 1415, 1495, 2137, 2404, 2708
SmoI	CTYRAG	8 cut(s)	372, 389, 809, 1415, 1495, 2137, 2404, 2708
SphI	GCATGC	1 cut(s)	1188
Sse8387I	CCTGCAGG	1 cut(s)	2745
SseBI	AGGCCT	1 cut(s)	1118
SsiI	CCGC	9 cut(s)	30, 131, 147, 210, 382, 724, 1213, 1334, 1837
SspI	AATATT	1 cut(s)	1748
SspMI	CTAG	7 cut(s)	416, 1319, 1338, 1730, 2046, 2364, 2378
SstI	GAGCTC	3 cut(s)	28, 226, 750
StuI	AGGCCT	1 cut(s)	1118
StyD4I	CCNGG	7 cut(s)	54, 86, 234, 580, 1540, 2053, 2238
StyI	CCWWGG	5 cut(s)	63, 93, 1783, 1909, 2182
TaaI	ACNGT	8 cut(s)	1352, 1456, 1573, 1599, 1640, 1871, 2301, 2437
TaiI	ACGT	2 cut(s)	84, 2543
TaqI	TCGA	6 cut(s)	78, 189, 398, 1111, 1984, 2284
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	7 cut(s)	412, 457, 630, 1019, 1234, 2048, 2150
TauI	GCSGC	1 cut(s)	1336
TfiI	GAWTC	7 cut(s)	366, 1411, 1830, 1901, 2033, 2273, 2486
Tru1I	TTAA	7 cut(s)	357, 896, 1259, 1416, 1601, 1764, 2660
Tru9I	TTAA	7 cut(s)	357, 896, 1259, 1416, 1601, 1764, 2660
TscAI	CASTG	4 cut(s)	384, 954, 1303, 2845
TseI	GCWGC	5 cut(s)	1038, 1772, 1822, 2576, 2775
TspDTI	ATGAA	8 cut(s)	497, 891, 1022, 1820, 2025, 2166, 2702, 2789
TspGWI	ACGGA	1 cut(s)	2304
TspRI	CASTG	4 cut(s)	384, 954, 1303, 2845
Van91I	CCANNNNNTGG	2 cut(s)	500, 1961
Vha464I	CTTAAG	1 cut(s)	1415
VpaK11BI	GGWCC	4 cut(s)	19, 328, 726, 2218
XapI	RAATTY	4 cut(s)	795, 1322, 2457, 2757
XbaI	TCTAGA	3 cut(s)	1318, 1729, 2363
XceI	RCATGY	5 cut(s)	413, 1060, 1102, 1188, 1252
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1069, 2460
XmiI	GTMKAC	2 cut(s)	1080, 2510
XmnI	GAANNNNTTC	2 cut(s)	1326, 2827
XspI	CTAG	7 cut(s)	416, 1319, 1338, 1730, 2046, 2364, 2378
ZrmI	AGTACT	2 cut(s)	632, 2152
Zsp2I	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.