Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007351

Physical Location & Seq

Genomic Coordinates Reverse (-)

4843996 .. 4848621

Gene Structure 4626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGCTTCCATCCCCATTTTCGGGACTGGACCCAAATCCAGATGGTTATTTTCTAATTAAGGAGAGAATCACTCAAGCACTGCGGTACCTCAAGGAGTCGAGTGATCAACATGTACTAGCTCAGGTTTGGGCACCGGTGAAGGATGGAAGTCGGTATGTACTCACAACCTCAGGGCAACCCTTTGTGCTGGATCCACATGATGGACTTCATCAGTATAGGATGGTTTCTCTGATGTATATGTTTTCTGTGGATGGGGAGAATGATGGAGTGCTTGGACTTCCTGGCCGTGTTTTCCAGCAAAAGATGCCCGAATGGACTCCAAATGTTCAGTACTACTCCATCAAAGAGTATCCACGGCTTGATCATGCTCAGCACTACAATGTTCAGGGAACCTTAGCTTTGCCCATATTTGAACCCTCTGGGCGGTCCTGTATTGGTGTAATTGAGCTCATAATGACTTCTCAGAAGATCAACTATGCTCCTGAGGTTGATAAAATTTGCAAAGCACTTGAGGCAGTAAGCTTGAAAAGTTCAGAGATATTGGATCATACAAGCACACAGATCCAGATACGCAATGAAGGTCGCCAAAATGCATTAACTGAAATCTTGGAGATACTGACAATGGTATGTGAAACTCATAAATTACCACTGGCTCAGACATGGGTTCCATGTATGCATCGCAATGTTTTGGCTTATGGTGGTGGCATGAAGAAGAGCTGTACAAGCTTTGATGGCAGCTGCATGGAACAGGTCTGCATGTCCACAACAGATGTGGCAGTCTACATTGTAGATGCTCACATGTGGGGTTTTCGAGAGGCCTGTGTAGAGCATCACTTACAAAAGGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCGTAATGCATGCTTCTGCAGAGACATTAGCCAGTTCCGCAAAACAGAATACCCTTTAGTACACTACGCACGCATGTTTGAGTTAACCAGCTCATTTGCAATCTGTTTACAGAGCACTCACACTGGAAATGATGATTACATTCTAGAATTTTTTCTGCCGCCTAGCATCAGAGACAGTTGTGAACAGCAGACTTTATTGGGCTCCATATTGGCTATAGTGAAAGATCATTGCCAGAATCTTAAGGTTGCTTCTGGAATTGGACTTGCAGAGGAAGGAACAGTTGAGATTGTTCAAGCTTCTATAAATGAGGGACTTGACTCAAGACTTGAATGCATACAGATACCCTGTTCCATGGAGCCACTTCCAGGGTCTTCCTTACCTAACAGAGAAGAGATGGTGCGCCTAAATCCAGCAAAACCACAGTTAATGGTGGACATTGATGCTATTAATGATGAGAGGAATGCAGTTCACAACGGTGGAAAAAACAACATTTCTGTTCCCGAGAATAAAGACATAAAAAAGACATCAGAGAGGAAGCGTGGGAAAACTGAGAAATCAATTAGTCTAGAGGTTCTTCAACAATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGAATCTCCCGCTGGCCATCTCGCAAGATCAACAAGGTCAACCGTTCTCTCAGTAAGCTAAAGCTTGTAATTGAATCTGTCCAAGGTGGTGAAGGAGCATTTGGTTTGAGTCCTCTTACTACAAGTCCACTTACTGGTGCTGTTGGCTCCATTTCTCGACCTTATACAAGCTCTCAACCCTATGAAGTTCAGGGAGAAAAGAAAGATTCACCCAGCTCTAGTACACCAGGAAGAGAGGGACAGGCTGGGATAGAAGATCCATTGCAAGATATTGGTAATGGCTCAAACTCATCCAAAACAGGTAGTGGCTCAAGGGAGGCGAGTACTGGTACCCCTACTTCTCATGGTTCATGCCAAGGTAGTCCGGCAAATGGAAGTGCAATGGTAAAGGACCCCTTTGTTTCTTCCATCCAGGAGCAATTCGTTGAAGTTGATCGCTCCCCTGAATCTGCATTTCGACCACCAGAGGAACTGTATGTACCAGTTCCGTGTTCAATACCAGATGCTCTCCTCATGACAGAACCTGAAGAACCATCTAGAGGAATGCTACTAGAGGATGCTGGAAGTTCAAAAGACTTGAGAAATCTGTGTCCTTTTACCGATATAACTGTGCATGAGCAAGTTCCAGAAGTTTTCTGGACAGACCCCCCATGTCCTGATTCGGCTCCTAACCAATCCATGTCTACTCTTGCTTACACAATGCCTCATAACACATCTTTACAAGAAATGAGGAGTGTAACCATAAAGGCAGCATATAAAGATGATATCATTAGGTTTCGGATCTCTATGAGTTCTTGTATAGTAGATTTGAAAGAGGAAGTGGCAAAGAGATTAAAGTTGGAAGTGGGCACATTTGATATGAAGTATATGGATGATGACCTTGAGTGGGTTCTGATAGCTTGTGATGCAGACCTGCAGGAATGCATGGAAATTTGCAGATCATCAGGCAGCAATATGATCAGACTCTCTGTTCATGACATTCTGTCCAATCTTGGAAGCTCTTCTGAGAGCACTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010118 GO:0010167 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042126 GO:0042128 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071941 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001057 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

853

Amino Acids

94.24

Weight (kDa)

5.37

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	38 - 172	6.8e-06	NLP protein GAF domain
GAF_NLP	PF22922	190 - 372	9.2e-78	NLP protein GAF domain
RWP-RK	PF02042	478 - 525	1.8e-23	RWP-RK domain
PB1	PF00564	759 - 839	1.3e-20	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64530 AT1G64530 AT4G24020 AT4G24020
fragaria_vesca	FvH4_5g11570 FvH4_5g11570
malus_domestica	MD06G1111900.v1.1 MD14G1133200.v1.1 MD14G1133300.v1.1
prunus_persica	Prupe.5G124900_v2.0.a1 Prupe.5G124900_v2.0.a1 Prupe.5G125000_v2.0.a1
pyrus_communis	pycom06g10490
rosa_chinensis	RchiOBHm_Chr7g0186181
rosa_laevigata	RLG00000004858
rosa_multiflora	Rmu_sc0009528.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268340
rosa_rugosa	Rorug06G0472600 Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068900 Rh7BG084800 Rh7CG079200 Rh7DG079400
rosa_wichuraiana	Rw7G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2460
Acc65I	GGTACC	2 cut(s)	84, 1868
AccB1I	GGYRCC	3 cut(s)	84, 130, 1868
AccB7I	CCANNNNNTGG	2 cut(s)	200, 1673
AccI	GTMKAC	2 cut(s)	780, 2222
AciI	CCGC	5 cut(s)	82, 424, 913, 1034, 1549
AclWI	GGATC	6 cut(s)	185, 198, 552, 556, 1790, 2327
AcoI	YGGCCR	2 cut(s)	283, 1553
AcsI	RAATTY	3 cut(s)	495, 1022, 2469
AcuI	CTGAAG	1 cut(s)	2085
AfiI	CCNNNNNNNGG	9 cut(s)	19, 20, 200, 423, 1241, 1673, 1910, 2078, 2425
AflII	CTTAAG	1 cut(s)	1115
AflIII	ACRYGT	2 cut(s)	109, 798
AgeI	ACCGGT	1 cut(s)	133
AhdI	GACNNNNNGTC	1 cut(s)	2521
AjnI	CCWGG	4 cut(s)	280, 1240, 1765, 1950
AjuI	GAANNNNNNNTTGG	2 cut(s)	1623, 1655
AleI	CACNNNNGTG	1 cut(s)	1350
Alw21I	GWGCWC	3 cut(s)	450, 992, 2552
Alw26I	GTCTC	2 cut(s)	891, 1041
AlwI	GGATC	6 cut(s)	185, 198, 552, 556, 1790, 2327
AlwNI	CAGNNNCTG	1 cut(s)	2063
Ama87I	CYCGRG	1 cut(s)	1376
AoxI	GGCC	3 cut(s)	283, 816, 1553
ApeKI	GCWGC	6 cut(s)	735, 738, 1484, 1534, 2288, 2487
ApoI	RAATTY	3 cut(s)	495, 1022, 2469
AseI	ATTAAT	1 cut(s)	1323
AsiGI	ACCGGT	1 cut(s)	133
Asp700I	GAANNNNTTC	2 cut(s)	1026, 2539
Asp718I	GGTACC	2 cut(s)	84, 1868
AspLEI	GCGC	2 cut(s)	1278, 1524
AspS9I	GGNCC	3 cut(s)	28, 426, 1930
AsuHPI	GGTGA	3 cut(s)	148, 1640, 1740
AvaI	CYCGRG	1 cut(s)	1376
AvaII	GGWCC	3 cut(s)	28, 426, 1930
AxyI	CCTNAGG	2 cut(s)	169, 483
BaeGI	GKGCMC	2 cut(s)	133, 2390
BaeI	ACNNNNGTAYC	2 cut(s)	68, 101
BalI	TGGCCA	1 cut(s)	1555
BamHI	GGATCC	1 cut(s)	190
BanI	GGYRCC	3 cut(s)	84, 130, 1868
BanII	GRGCYC	2 cut(s)	450, 1079
BarI	GAAGNNNNNNTAC	2 cut(s)	1861, 1893
BbsI	GAAGAC	1 cut(s)	1239
Bbv12I	GWGCWC	3 cut(s)	450, 992, 2552
BbvI	GCAGC	6 cut(s)	725, 747, 1471, 1546, 2300, 2499
BceAI	ACGGC	2 cut(s)	270, 371
BciT130I	CCWGG	4 cut(s)	282, 1242, 1767, 1952
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	3 cut(s)	103, 361, 2496
BcoDI	GTCTC	2 cut(s)	891, 1041
BfaI	CTAG	7 cut(s)	116, 1019, 1038, 1442, 1758, 2076, 2090
BfmI	CTRYAG	4 cut(s)	892, 1089, 1528, 2453
BfrI	CTTAAG	1 cut(s)	1115
BfuAI	ACCTGC	1 cut(s)	2460
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	7 cut(s)	736, 739, 1034, 1485, 1535, 2289, 2488
BlpI	GCTNAGC	1 cut(s)	369
BlsI	GCNGC	7 cut(s)	737, 740, 1035, 1486, 1536, 2290, 2489
BmcAI	AGTACT	2 cut(s)	332, 1864
Bme1390I	CCNGG	4 cut(s)	282, 1242, 1767, 1952
Bme18I	GGWCC	3 cut(s)	28, 426, 1930
BmeRI	GACNNNNNGTC	1 cut(s)	2521
BmeT110I	CYCGRG	1 cut(s)	1376
BmgT120I	GGNCC	3 cut(s)	28, 426, 1930
BmrFI	CCNGG	4 cut(s)	282, 1242, 1767, 1952
BpiI	GAAGAC	1 cut(s)	1239
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
Bpu10I	CCTNAGC	2 cut(s)	120, 394
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	7 cut(s)	57, 74, 530, 1180, 1834, 2137, 2441
BsaJI	CCNNGG	6 cut(s)	353, 1227, 1241, 1495, 1621, 1894
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	9 cut(s)	19, 20, 200, 423, 1241, 1673, 1910, 2078, 2425
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	7 cut(s)	30, 654, 907, 1003, 1678, 1870, 2021
Bse21I	CCTNAGG	2 cut(s)	169, 483
Bse3DI	GCAATG	5 cut(s)	580, 688, 1102, 1799, 1926
BseBI	CCWGG	4 cut(s)	282, 1242, 1767, 1952
BseDI	CCNNGG	6 cut(s)	353, 1227, 1241, 1495, 1621, 1894
BseGI	GGATG	8 cut(s)	8, 148, 225, 256, 1829, 1947, 2101, 2416
BseLI	CCNNNNNNNGG	9 cut(s)	19, 20, 200, 423, 1241, 1673, 1910, 2078, 2425
BseMI	GCAATG	5 cut(s)	580, 688, 1102, 1799, 1926
BseNI	ACTGG	7 cut(s)	30, 654, 907, 1003, 1678, 1870, 2021
BseRI	GAGGAG	2 cut(s)	2039, 2284
BseSI	GKGCMC	2 cut(s)	133, 2390
BseXI	GCAGC	6 cut(s)	725, 747, 1471, 1546, 2300, 2499
BseYI	CCCAGC	4 cut(s)	857, 1466, 1751, 1784
BshFI	GGCC	3 cut(s)	285, 818, 1555
BshNI	GGYRCC	3 cut(s)	84, 130, 1868
BshTI	ACCGGT	1 cut(s)	133
BsiHKAI	GWGCWC	3 cut(s)	450, 992, 2552
BsiHKCI	CYCGRG	1 cut(s)	1376
BsiSI	CCGG	2 cut(s)	134, 1904
BslFI	GGGAC	4 cut(s)	36, 859, 1200, 1791
BslI	CCNNNNNNNGG	9 cut(s)	19, 20, 200, 423, 1241, 1673, 1910, 2078, 2425
BsmAI	GTCTC	2 cut(s)	891, 1041
BsmFI	GGGAC	4 cut(s)	36, 859, 1200, 1791
BsmI	GAATGC	4 cut(s)	1211, 1342, 2088, 2465
BsnI	GGCC	3 cut(s)	285, 818, 1555
BsoBI	CYCGRG	1 cut(s)	1376
Bsp1286I	GDGCHC	6 cut(s)	133, 450, 992, 1079, 2390, 2552
Bsp1407I	TGTACA	1 cut(s)	719
Bsp1720I	GCTNAGC	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	1227
BspACI	CCGC	5 cut(s)	82, 424, 913, 1034, 1549
BspANI	GGCC	3 cut(s)	285, 818, 1555
BspHI	TCATGA	2 cut(s)	2052, 2512
BspMAI	CTGCAG	2 cut(s)	896, 2457
BspMI	ACCTGC	1 cut(s)	2460
BspPI	GGATC	6 cut(s)	185, 198, 552, 556, 1790, 2327
BspQI	GCTCTTC	2 cut(s)	707, 2545
BspT107I	GGYRCC	3 cut(s)	84, 130, 1868
BspTI	CTTAAG	1 cut(s)	1115
BsrDI	GCAATG	5 cut(s)	580, 688, 1102, 1799, 1926
BsrFI	RCCGGY	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	719
BsrI	ACTGG	7 cut(s)	30, 654, 907, 1003, 1678, 1870, 2021
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	6 cut(s)	353, 1227, 1241, 1495, 1621, 1894
BssT1I	CCWWGG	4 cut(s)	1227, 1495, 1621, 1894
Bst2UI	CCWGG	4 cut(s)	282, 1242, 1767, 1952
Bst4CI	ACNGT	7 cut(s)	1052, 1156, 1299, 1352, 1583, 2013, 2149
Bst6I	CTCTTC	4 cut(s)	707, 1260, 1765, 2545
BstAFI	CTTAAG	1 cut(s)	1115
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstAUI	TGTACA	1 cut(s)	719
BstC8I	GCNNGC	3 cut(s)	886, 946, 1553
BstDSI	CCRYGG	2 cut(s)	353, 1227
BstF5I	GGATG	8 cut(s)	8, 148, 225, 256, 1829, 1947, 2101, 2416
BstHHI	GCGC	2 cut(s)	1278, 1524
BstMAI	GTCTC	2 cut(s)	891, 1041
BstMWI	GCNNNNNNNGC	7 cut(s)	304, 512, 723, 732, 863, 912, 2444
BstNI	CCWGG	4 cut(s)	282, 1242, 1767, 1952
BstNSI	RCATGY	5 cut(s)	113, 760, 802, 888, 952
BstSCI	CCNGG	4 cut(s)	280, 1240, 1765, 1950
BstSFI	CTRYAG	4 cut(s)	892, 1089, 1528, 2453
BstSLI	GKGCMC	2 cut(s)	133, 2390
BstV1I	GCAGC	6 cut(s)	725, 747, 1471, 1546, 2300, 2499
BstV2I	GAAGAC	1 cut(s)	1239
BstX2I	RGATCY	4 cut(s)	190, 561, 1795, 2319
BstYI	RGATCY	4 cut(s)	190, 561, 1795, 2319
Bsu36I	CCTNAGG	2 cut(s)	169, 483
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	285, 818, 1555
BtgI	CCRYGG	2 cut(s)	353, 1227
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	8 cut(s)	8, 148, 225, 256, 1829, 1947, 2101, 2416
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	4 cut(s)	77, 647, 996, 2550
BveI	ACCTGC	1 cut(s)	2460
Cac8I	GCNNGC	3 cut(s)	886, 946, 1553
CaiI	CAGNNNCTG	1 cut(s)	2063
CciI	TCATGA	2 cut(s)	2052, 2512
CfoI	GCGC	2 cut(s)	1278, 1524
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	28, 426, 1930
CspAI	ACCGGT	1 cut(s)	133
CspCI	CAANNNNNGTGG	2 cut(s)	753, 788
DriI	GACNNNNNGTC	1 cut(s)	2521
EaeI	YGGCCR	2 cut(s)	283, 1553
Eam1104I	CTCTTC	4 cut(s)	707, 1260, 1765, 2545
Eam1105I	GACNNNNNGTC	1 cut(s)	2521
EarI	CTCTTC	4 cut(s)	707, 1260, 1765, 2545
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	4 cut(s)	1227, 1495, 1621, 1894
Eco147I	AGGCCT	1 cut(s)	818
Eco24I	GRGCYC	2 cut(s)	450, 1079
Eco32I	GATATC	1 cut(s)	2305
Eco47I	GGWCC	3 cut(s)	28, 426, 1930
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	2085
Eco81I	CCTNAGG	2 cut(s)	169, 483
Eco88I	CYCGRG	1 cut(s)	1376
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	1930
EcoRII	CCWGG	4 cut(s)	280, 1240, 1765, 1950
EcoRV	GATATC	1 cut(s)	2305
EcoT14I	CCWWGG	4 cut(s)	1227, 1495, 1621, 1894
EcoT22I	ATGCAT	5 cut(s)	595, 678, 886, 1211, 2465
EcoT38I	GRGCYC	2 cut(s)	450, 1079
ErhI	CCWWGG	4 cut(s)	1227, 1495, 1621, 1894
FalI	AAGNNNNNCTT	2 cut(s)	1919, 1951
FaqI	GGGAC	4 cut(s)	36, 859, 1200, 1791
FauI	CCCGC	1 cut(s)	1556
FbaI	TGATCA	3 cut(s)	103, 361, 2496
FblI	GTMKAC	2 cut(s)	780, 2222
Fnu4HI	GCNGC	7 cut(s)	736, 739, 1034, 1485, 1535, 2289, 2488
FokI	GGATG	7 cut(s)	155, 232, 263, 1816, 1934, 2108, 2423
FriOI	GRGCYC	2 cut(s)	450, 1079
Fsp4HI	GCNGC	7 cut(s)	736, 739, 1034, 1485, 1535, 2289, 2488
FspBI	CTAG	7 cut(s)	116, 1019, 1038, 1442, 1758, 2076, 2090
GlaI	GCGC	2 cut(s)	1277, 1523
GluI	GCNGC	7 cut(s)	736, 739, 1034, 1485, 1535, 2289, 2488
GsaI	CCCAGC	4 cut(s)	861, 1470, 1755, 1788
HaeIII	GGCC	3 cut(s)	285, 818, 1555
HapII	CCGG	2 cut(s)	134, 1904
HhaI	GCGC	2 cut(s)	1278, 1524
Hin6I	GCGC	2 cut(s)	1276, 1522
HinP1I	GCGC	2 cut(s)	1276, 1522
HincII	GTYRAC	2 cut(s)	960, 1579
HindII	GTYRAC	2 cut(s)	960, 1579
HindIII	AAGCTT	4 cut(s)	520, 724, 1170, 1601
HpaI	GTTAAC	1 cut(s)	960
HpaII	CCGG	2 cut(s)	134, 1904
HphI	GGTGA	3 cut(s)	148, 1640, 1740
HpyAV	CCTTC	4 cut(s)	133, 572, 1142, 1625
HpyCH4III	ACNGT	7 cut(s)	1052, 1156, 1299, 1352, 1583, 2013, 2149
HpyF10VI	GCNNNNNNNGC	7 cut(s)	304, 512, 723, 732, 863, 912, 2444
HspAI	GCGC	2 cut(s)	1276, 1522
KpnI	GGTACC	2 cut(s)	88, 1872
Ksp22I	TGATCA	3 cut(s)	103, 361, 2496
KspAI	GTTAAC	1 cut(s)	960
LguI	GCTCTTC	2 cut(s)	707, 2545
LmnI	GCTCC	8 cut(s)	484, 1082, 1231, 1634, 1691, 1954, 1982, 2209
Lsp1109I	GCAGC	6 cut(s)	725, 747, 1471, 1546, 2300, 2499
MaeI	CTAG	7 cut(s)	116, 1019, 1038, 1442, 1758, 2076, 2090
MaeIII	GTNAC	1 cut(s)	2275
MflI	RGATCY	4 cut(s)	190, 561, 1795, 2319
MhlI	GDGCHC	6 cut(s)	133, 450, 992, 1079, 2390, 2552
MlsI	TGGCCA	1 cut(s)	1555
MluNI	TGGCCA	1 cut(s)	1555
MlyI	GAGTC	6 cut(s)	104, 310, 1187, 1480, 1657, 2496
MmeI	TCCRAC	1 cut(s)	2358
Mox20I	TGGCCA	1 cut(s)	1555
Mph1103I	ATGCAT	5 cut(s)	595, 678, 886, 1211, 2465
MroXI	GAANNNNTTC	2 cut(s)	1026, 2539
MscI	TGGCCA	1 cut(s)	1555
MseI	TTAA	8 cut(s)	57, 596, 959, 1116, 1301, 1323, 1476, 2372
MslI	CAYNNNNRTG	3 cut(s)	378, 681, 1350
Msp20I	TGGCCA	1 cut(s)	1555
MspA1I	CMGCKG	2 cut(s)	738, 1551
MspCI	CTTAAG	1 cut(s)	1115
MspI	CCGG	2 cut(s)	134, 1904
MspR9I	CCNGG	4 cut(s)	282, 1242, 1767, 1952
Mva1269I	GAATGC	4 cut(s)	1211, 1342, 2088, 2465
MvaI	CCWGG	4 cut(s)	282, 1242, 1767, 1952
MwoI	GCNNNNNNNGC	7 cut(s)	304, 512, 723, 732, 863, 912, 2444
NcoI	CCATGG	1 cut(s)	1227
NsiI	ATGCAT	5 cut(s)	595, 678, 886, 1211, 2465
NspI	RCATGY	5 cut(s)	113, 760, 802, 888, 952
OliI	CACNNNNGTG	1 cut(s)	1350
PaeI	GCATGC	1 cut(s)	888
PagI	TCATGA	2 cut(s)	2052, 2512
PceI	AGGCCT	1 cut(s)	818
PciI	ACATGT	2 cut(s)	109, 798
PciSI	GCTCTTC	2 cut(s)	707, 2545
PctI	GAATGC	4 cut(s)	1211, 1342, 2088, 2465
PdmI	GAANNNNTTC	2 cut(s)	1026, 2539
PfeI	GAWTC	7 cut(s)	66, 1111, 1542, 1613, 1745, 1985, 2198
PflMI	CCANNNNNTGG	2 cut(s)	200, 1673
PfoI	TCCNGGA	1 cut(s)	1950
PinAI	ACCGGT	1 cut(s)	133
PkrI	GCNGC	7 cut(s)	737, 740, 1035, 1486, 1536, 2290, 2489
PleI	GAGTC	6 cut(s)	103, 310, 1187, 1479, 1656, 2496
PpsI	GAGTC	6 cut(s)	103, 310, 1187, 1479, 1656, 2496
PpuMI	RGGWCCY	1 cut(s)	1930
PscI	ACATGT	2 cut(s)	109, 798
PshBI	ATTAAT	1 cut(s)	1323
Psp124BI	GAGCTC	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	1930
Psp6I	CCWGG	4 cut(s)	280, 1240, 1765, 1950
PspFI	CCCAGC	4 cut(s)	857, 1466, 1751, 1784
PspGI	CCWGG	4 cut(s)	280, 1240, 1765, 1950
PspPI	GGNCC	3 cut(s)	28, 426, 1930
PspPPI	RGGWCCY	1 cut(s)	1930
PsrI	GAACNNNNNNTAC	2 cut(s)	2001, 2033
PstI	CTGCAG	2 cut(s)	896, 2457
PstNI	CAGNNNCTG	1 cut(s)	2063
PsuI	RGATCY	4 cut(s)	190, 561, 1795, 2319
PvuII	CAGCTG	1 cut(s)	738
RseI	CAYNNNNRTG	3 cut(s)	378, 681, 1350
SacI	GAGCTC	1 cut(s)	450
SapI	GCTCTTC	2 cut(s)	707, 2545
SaqAI	TTAA	8 cut(s)	57, 596, 959, 1116, 1301, 1323, 1476, 2372
SatI	GCNGC	7 cut(s)	736, 739, 1034, 1485, 1535, 2289, 2488
Sau96I	GGNCC	3 cut(s)	28, 426, 1930
SbfI	CCTGCAGG	1 cut(s)	2457
ScaI	AGTACT	2 cut(s)	332, 1864
SchI	GAGTC	6 cut(s)	104, 310, 1187, 1480, 1657, 2496
ScrFI	CCNGG	4 cut(s)	282, 1242, 1767, 1952
SdaI	CCTGCAGG	1 cut(s)	2457
SduI	GDGCHC	6 cut(s)	133, 450, 992, 1079, 2390, 2552
SfcI	CTRYAG	4 cut(s)	892, 1089, 1528, 2453
SgrAI	CRCCGGYG	1 cut(s)	133
SinI	GGWCC	3 cut(s)	28, 426, 1930
SmiMI	CAYNNNNRTG	3 cut(s)	378, 681, 1350
SmlI	CTYRAG	8 cut(s)	72, 89, 509, 1115, 1195, 1849, 2116, 2420
SmoI	CTYRAG	8 cut(s)	72, 89, 509, 1115, 1195, 1849, 2116, 2420
SphI	GCATGC	1 cut(s)	888
Sse8387I	CCTGCAGG	1 cut(s)	2457
SseBI	AGGCCT	1 cut(s)	818
SsiI	CCGC	5 cut(s)	82, 424, 913, 1034, 1549
SspI	AATATT	1 cut(s)	1460
SspMI	CTAG	7 cut(s)	116, 1019, 1038, 1442, 1758, 2076, 2090
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	818
StyD4I	CCNGG	4 cut(s)	280, 1240, 1765, 1950
StyI	CCWWGG	4 cut(s)	1227, 1495, 1621, 1894
TaaI	ACNGT	7 cut(s)	1052, 1156, 1299, 1352, 1583, 2013, 2149
TaqI	TCGA	4 cut(s)	98, 811, 1696, 1996
TatI	WGTACW	7 cut(s)	112, 157, 330, 719, 934, 1760, 1862
TauI	GCSGC	1 cut(s)	1036
TfiI	GAWTC	7 cut(s)	66, 1111, 1542, 1613, 1745, 1985, 2198
Tru1I	TTAA	8 cut(s)	57, 596, 959, 1116, 1301, 1323, 1476, 2372
Tru9I	TTAA	8 cut(s)	57, 596, 959, 1116, 1301, 1323, 1476, 2372
TscAI	CASTG	4 cut(s)	84, 654, 1003, 2557
TseI	GCWGC	6 cut(s)	735, 738, 1484, 1534, 2288, 2487
TspDTI	ATGAA	8 cut(s)	197, 591, 722, 1532, 1737, 1878, 2414, 2501
TspGWI	ACGGA	1 cut(s)	2016
TspRI	CASTG	4 cut(s)	84, 654, 1003, 2557
Van91I	CCANNNNNTGG	2 cut(s)	200, 1673
Vha464I	CTTAAG	1 cut(s)	1115
VpaK11BI	GGWCC	3 cut(s)	28, 426, 1930
VspI	ATTAAT	1 cut(s)	1323
XapI	RAATTY	3 cut(s)	495, 1022, 2469
XbaI	TCTAGA	3 cut(s)	1018, 1441, 2075
XceI	RCATGY	5 cut(s)	113, 760, 802, 888, 952
XcmI	CCANNNNNNNNNTGG	2 cut(s)	769, 2172
XmiI	GTMKAC	2 cut(s)	780, 2222
XmnI	GAANNNNTTC	2 cut(s)	1026, 2539
XspI	CTAG	7 cut(s)	116, 1019, 1038, 1442, 1758, 2076, 2090
ZrmI	AGTACT	2 cut(s)	332, 1864
Zsp2I	ATGCAT	5 cut(s)	595, 678, 886, 1211, 2465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.