Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007351

Physical Location & Seq

Genomic Coordinates Forward (+)

6128778 .. 6133126

Gene Structure 4349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2862 bp

ATGTCCGACCCCGAAGAGGACCGAGCTCCCGCCATTTTCCCCAAGTCAAAGAACCTGGACGCCATGGACTTTGATATCGACGTTTCCTGGCCCTTGGATCAGATCCAGTTCCTCTCTAATCCCACCTCCCCGCTTCTCTTCTCCCCCGCCGACGACCCCTGTTCCCCTCTCTGGGCCTTTCCCGATGTCGATCATGACAAGCTCGCCGGCGGAGGAGGCCGAGCTCTTCCCGACCCGGCCCAATTCGTTTCCGATGCTAATCCGGTTGTGGAGAAGCCAAGAGAGAATGAGGACAACAGAATGCTTCCATCCCCATTTTCGGGACTGGACCCAAATCCAGATGGTTATTTTCTAATTAAGGAGAGAATCACTCAAGCACTGCGGTACCTCAAGGAGTCGAGTGATCAACATGTACTAGCTCAGGTTTGGGCACCGGTGAAGGATGGAAGTCGGTATGTACTCACAACCTCAGGGCAACCCTTTGTGCTGGATCCACATGATGGACTTCATCAGTATAGGATGGTTTCTCTGATGTATATGTTTTCTGTGGATGGGGAGAATGATGGAGTGCTTGGACTTCCTGGCCGTGTTTTCCAGCAAAAGATGCCCGAATGGACTCCAAATGTTCAGTACTACTCCATCAAAGAGTATCCACGGCTTGATCATGCTCAGCACTACAATGTTCAGGGAACCTTAGCTTTGCCCATATTTGAACCCTCTGGGCGGTCCTGTATTGGTGTAATTGAGCTCATAATGACTTCTCAGAAGATCAACTATGCTCCTGAGGTTGATAAAATTTGCAAAGCACTTGAGGCAGTATGCTTGAAAAGTTCAGAGATATTGGATCATACAAGCACACAGATCCAGATACGCAATGAAGGTCGCCAAAATGCATTAACTGAAATCTTGGAGATACTGACAATGGTATGTGAAACTCATAAATTACCACTGGCTCAGACATGGGTTCCATGTATGCATCGCAATGTTTTGGCTTATGGTGGTGGCATGAAGAAGAGCTGTACAAGCTTTGATGGCAGCTGCATGGAACAGGTCTGCATGTCCACAACAGATGTGGCAGTCTACATTGTAGATGCTCACATGTGGGGTTTTCGAGAGGCCTGTGTAGAGCATCACTTACAAAAGGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCGTAATGCATGCTTCTGCAGAGACATTAGCCAGTTCCGCAAAACAGAATACCCTTTAGTACACTACGCACGCATGTTTGAGTTAACCAGCTCATTTGCAATCTGTTTACAGAGCACTCACACTGGAAATGATGATTACATTCTAGAATTTTTTCTGCCGCCTAGCATCAGAGACAGTTGTGAACAGCAGACTTTATTGGGCTCCATATTGGCTATAGTGAAAGATCATTGCCAGAATCTTAAGGTTGCTTCTGGAATTGGACTTGCAGAGGAAGGAACAGTTGAGATTGTTCAAGCTTCTATAAATGAGGGACTTGACTCAAGACTTGAATGCATACAGATACCCTGTTCCATGGAGCCACTTCCAGGGTCTTCCTTACCTAACAGAGAAGAGATGGTGCGCCTAAATCCAGCAAAACCACAGTTAATGGTGGACATTGATGCTATTAATGATGAGAGGAATGCAGTTCACAACGGTGGAAAAAACAACATTTCTGTTCCCGAGAATAAAGACATAAAAAAGACATCAGAGAGGAAGCGTGGGAAAACTGAGAAATCAATTAGTCTAGAGGTTCTTCAACAATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGAATCTCCCGCTGGCCATCTCGCAAGATCAACAAGGTCAACCGTTCTCTCAGTAAGCTAAAGCTTGTAATTGAATCTGTCCAAGGTGGTGAAGGAGCATTTGGTTTGAGTCCTCTTACTACAAGTCCACTTACTGGTGCTGTTGGCTCCATTTCTCGACCTTATACAAGCTCTCAACCCTATGAAGTTCAGGGAGAAAAGAAAGATTCACCCAGCTCTAGTACACCAGGAAGAGAGGGACAGGCTGGGATAGAAGATCCATTGCAAGATATTGGTAATGGCTCAAACTCATCCAAAACAGGTAGTGGCTCAAGGGAGGCGAGTACTGGTACCCCTACTTCTCATGGTTCATGCCAAGGTAGTCCGGCAAATGGAAGTGCAATGGTAAAGGACCCCTTTGTTTCTTCCATCCAGGAGCAATTCGTTGAAGTTGATCGCTCCCCTGAATCTGCATTTCGACCACCAGAGGAACTGTATGTACCAGTTCCGTGTTCAATACCAGATGCTCTCCTCATGACAGAACCTGAAGAACCATATAGAGGAATGCTACTAGAGGATGCTGGAAGTTCAAAAGACTTGAGAAATCTGTGTCCTTTTACCGATATAACTGTGCATGAGCAAGTTCCAGAAGTTTTCTGGACAGACCCCCAATGTCCTGATTCGGCTCCTAACCAATCCATGTCTACTCTTGCTTACACAATGCCTCATAACACATCTTTACAAGAAATGAGGAGTGTAACCATAAAGGCAGCATATAAAGATGATATCATTAGGTTTCGGATCTCTATGAGTTCTTGTATAGTAGATTTGAAAGAGGAAGTGGCAAAGAGATTAAAGTTGGAAGTGGGCACATTTGATATGAAGTATATGGATGATGACCTTGAGTGGGTTCTGATAGCTTGTGATGCAGACCTGCAGGAATGCATGGAAATTTGCAGATCATCAGGCAGCAATATGATCAGACTCTCTGTTCATGACATTCTGTCCAATCTTGGAAGCTCTTCTGAGAGCACTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010118 GO:0010167 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042126 GO:0042128 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0071941 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001057 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1 RWP-RK

Protein Analysis

953

Amino Acids

105.35

Weight (kDa)

5.08

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAF_NLP	PF22922	138 - 273	6.4e-06	NLP protein GAF domain
GAF_NLP	PF22922	290 - 472	1.1e-77	NLP protein GAF domain
RWP-RK	PF02042	578 - 625	2.1e-23	RWP-RK domain
PB1	PF00564	859 - 939	1.5e-20	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64530 AT1G64530 AT4G24020 AT4G24020
fragaria_vesca	FvH4_5g11570 FvH4_5g11570
malus_domestica	MD06G1111900.v1.1 MD14G1133200.v1.1 MD14G1133300.v1.1
prunus_persica	Prupe.5G124900_v2.0.a1 Prupe.5G124900_v2.0.a1 Prupe.5G125000_v2.0.a1
pyrus_communis	pycom06g10490
rosa_chinensis	RchiOBHm_Chr7g0186181
rosa_laevigata	RLG00000004858
rosa_multiflora	Rmu_sc0009528.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268340
rosa_rugosa	Rorug06G0472600 Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068900 Rh7BG084800 Rh7CG079200 Rh7DG079400
rosa_wichuraiana	Rw7G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2760
Acc65I	GGTACC	2 cut(s)	384, 2168
AccB1I	GGYRCC	3 cut(s)	384, 430, 2168
AccB7I	CCANNNNNTGG	2 cut(s)	500, 1973
AccI	GTMKAC	2 cut(s)	1080, 2522
AciI	CCGC	9 cut(s)	30, 131, 147, 210, 382, 724, 1213, 1334, 1849
AclWI	GGATC	8 cut(s)	97, 105, 485, 498, 852, 856, 2090, 2627
AcoI	YGGCCR	2 cut(s)	583, 1853
AcsI	RAATTY	3 cut(s)	795, 1322, 2769
AcuI	CTGAAG	1 cut(s)	2385
AcyI	GRCGYC	1 cut(s)	60
AflII	CTTAAG	1 cut(s)	1415
AflIII	ACRYGT	2 cut(s)	409, 1098
AgeI	ACCGGT	1 cut(s)	433
AhdI	GACNNNNNGTC	1 cut(s)	2821
AjnI	CCWGG	6 cut(s)	54, 86, 580, 1540, 2065, 2250
AjuI	GAANNNNNNNTTGG	2 cut(s)	1923, 1955
AleI	CACNNNNGTG	1 cut(s)	1650
Alw21I	GWGCWC	5 cut(s)	28, 226, 750, 1292, 2852
Alw26I	GTCTC	2 cut(s)	1191, 1341
AlwI	GGATC	8 cut(s)	97, 105, 485, 498, 852, 856, 2090, 2627
AlwNI	CAGNNNCTG	1 cut(s)	2363
Ama87I	CYCGRG	1 cut(s)	1676
AoxI	GGCC	7 cut(s)	89, 174, 217, 237, 583, 1116, 1853
ApeKI	GCWGC	6 cut(s)	1035, 1038, 1784, 1834, 2588, 2787
ApoI	RAATTY	3 cut(s)	795, 1322, 2769
AseI	ATTAAT	1 cut(s)	1623
AsiGI	ACCGGT	1 cut(s)	433
Asp700I	GAANNNNTTC	2 cut(s)	1326, 2839
Asp718I	GGTACC	2 cut(s)	384, 2168
AspLEI	GCGC	2 cut(s)	1578, 1824
AspS9I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	448, 1940, 2040
AvaI	CYCGRG	1 cut(s)	1676
AvaII	GGWCC	4 cut(s)	19, 328, 726, 2230
AxyI	CCTNAGG	2 cut(s)	469, 783
BaeGI	GKGCMC	2 cut(s)	433, 2690
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BalI	TGGCCA	1 cut(s)	1855
BamHI	GGATCC	1 cut(s)	490
BanI	GGYRCC	3 cut(s)	384, 430, 2168
BanII	GRGCYC	4 cut(s)	28, 226, 750, 1379
BarI	GAAGNNNNNNTAC	2 cut(s)	2161, 2193
BbsI	GAAGAC	1 cut(s)	1539
Bbv12I	GWGCWC	5 cut(s)	28, 226, 750, 1292, 2852
BbvI	GCAGC	6 cut(s)	1025, 1047, 1771, 1846, 2600, 2799
BceAI	ACGGC	2 cut(s)	570, 671
BciT130I	CCWGG	6 cut(s)	56, 88, 582, 1542, 2067, 2252
BciVI	GTATCC	1 cut(s)	660
BclI	TGATCA	3 cut(s)	403, 661, 2796
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	1191, 1341
BfaI	CTAG	6 cut(s)	416, 1319, 1338, 1742, 2058, 2390
BfmI	CTRYAG	4 cut(s)	1192, 1389, 1828, 2753
BfrI	CTTAAG	1 cut(s)	1415
BfuAI	ACCTGC	1 cut(s)	2760
BfuI	GTATCC	1 cut(s)	660
BisI	GCNGC	7 cut(s)	1036, 1039, 1334, 1785, 1835, 2589, 2788
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	7 cut(s)	1037, 1040, 1335, 1786, 1836, 2590, 2789
BmcAI	AGTACT	2 cut(s)	632, 2164
Bme1390I	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2067, 2252
Bme18I	GGWCC	4 cut(s)	19, 328, 726, 2230
BmeRI	GACNNNNNGTC	1 cut(s)	2821
BmeT110I	CYCGRG	1 cut(s)	1676
BmgT120I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
BmrFI	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2067, 2252
BpiI	GAAGAC	1 cut(s)	1539
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
Bpu10I	CCTNAGC	2 cut(s)	420, 694
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	7 cut(s)	357, 374, 830, 1480, 2134, 2437, 2741
BpuMI	CCSGG	1 cut(s)	236
BsaBI	GATNNNNATC	2 cut(s)	189, 258
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	8 cut(s)	63, 93, 653, 1527, 1541, 1795, 1921, 2194
BsaWI	WCCGGW	2 cut(s)	262, 433
Bse118I	RCCGGY	2 cut(s)	206, 433
Bse1I	ACTGG	8 cut(s)	106, 330, 954, 1207, 1303, 1978, 2170, 2321
Bse21I	CCTNAGG	2 cut(s)	469, 783
Bse3DI	GCAATG	5 cut(s)	880, 988, 1402, 2099, 2226
Bse8I	GATNNNNATC	2 cut(s)	189, 258
BseBI	CCWGG	6 cut(s)	56, 88, 582, 1542, 2067, 2252
BseDI	CCNNGG	8 cut(s)	63, 93, 653, 1527, 1541, 1795, 1921, 2194
BseGI	GGATG	8 cut(s)	308, 448, 525, 556, 2129, 2247, 2401, 2716
BseJI	GATNNNNATC	2 cut(s)	189, 258
BseMI	GCAATG	5 cut(s)	880, 988, 1402, 2099, 2226
BseNI	ACTGG	8 cut(s)	106, 330, 954, 1207, 1303, 1978, 2170, 2321
BseRI	GAGGAG	3 cut(s)	228, 2339, 2584
BseSI	GKGCMC	2 cut(s)	433, 2690
BseXI	GCAGC	6 cut(s)	1025, 1047, 1771, 1846, 2600, 2799
BseYI	CCCAGC	4 cut(s)	1157, 1766, 2051, 2084
BshFI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
BshNI	GGYRCC	3 cut(s)	384, 430, 2168
BshTI	ACCGGT	1 cut(s)	433
BsiHKAI	GWGCWC	5 cut(s)	28, 226, 750, 1292, 2852
BsiHKCI	CYCGRG	1 cut(s)	1676
BsiSI	CCGG	5 cut(s)	207, 236, 263, 434, 2204
BslFI	GGGAC	4 cut(s)	336, 1159, 1500, 2091
BsmAI	GTCTC	2 cut(s)	1191, 1341
BsmFI	GGGAC	4 cut(s)	336, 1159, 1500, 2091
BsmI	GAATGC	5 cut(s)	306, 1511, 1642, 2388, 2765
BsnI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
BsoBI	CYCGRG	1 cut(s)	1676
Bsp1286I	GDGCHC	8 cut(s)	28, 226, 433, 750, 1292, 1379, 2690, 2852
Bsp1407I	TGTACA	1 cut(s)	1019
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	2 cut(s)	63, 1527
BspACI	CCGC	9 cut(s)	30, 131, 147, 210, 382, 724, 1213, 1334, 1849
BspANI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
BspHI	TCATGA	3 cut(s)	193, 2352, 2812
BspMAI	CTGCAG	2 cut(s)	1196, 2757
BspMI	ACCTGC	1 cut(s)	2760
BspPI	GGATC	8 cut(s)	97, 105, 485, 498, 852, 856, 2090, 2627
BspQI	GCTCTTC	3 cut(s)	231, 1007, 2845
BspT107I	GGYRCC	3 cut(s)	384, 430, 2168
BspTI	CTTAAG	1 cut(s)	1415
BsrDI	GCAATG	5 cut(s)	880, 988, 1402, 2099, 2226
BsrFI	RCCGGY	2 cut(s)	206, 433
BsrGI	TGTACA	1 cut(s)	1019
BsrI	ACTGG	8 cut(s)	106, 330, 954, 1207, 1303, 1978, 2170, 2321
BssAI	RCCGGY	2 cut(s)	206, 433
BssECI	CCNNGG	8 cut(s)	63, 93, 653, 1527, 1541, 1795, 1921, 2194
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	6 cut(s)	63, 93, 1527, 1795, 1921, 2194
Bst2UI	CCWGG	6 cut(s)	56, 88, 582, 1542, 2067, 2252
Bst4CI	ACNGT	7 cut(s)	1352, 1456, 1599, 1652, 1883, 2313, 2449
Bst6I	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2065, 2845
BstACI	GRCGYC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	1415
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstAUI	TGTACA	1 cut(s)	1019
BstC8I	GCNNGC	5 cut(s)	204, 208, 1186, 1246, 1853
BstDSI	CCRYGG	3 cut(s)	63, 653, 1527
BstF5I	GGATG	8 cut(s)	308, 448, 525, 556, 2129, 2247, 2401, 2716
BstHHI	GCGC	2 cut(s)	1578, 1824
BstMAI	GTCTC	2 cut(s)	1191, 1341
BstMWI	GCNNNNNNNGC	8 cut(s)	216, 604, 812, 1023, 1032, 1163, 1212, 2744
BstNI	CCWGG	6 cut(s)	56, 88, 582, 1542, 2067, 2252
BstNSI	RCATGY	5 cut(s)	413, 1060, 1102, 1188, 1252
BstSCI	CCNGG	7 cut(s)	54, 86, 234, 580, 1540, 2065, 2250
BstSFI	CTRYAG	4 cut(s)	1192, 1389, 1828, 2753
BstSLI	GKGCMC	2 cut(s)	433, 2690
BstV1I	GCAGC	6 cut(s)	1025, 1047, 1771, 1846, 2600, 2799
BstV2I	GAAGAC	1 cut(s)	1539
BstX2I	RGATCY	5 cut(s)	102, 490, 861, 2095, 2619
BstYI	RGATCY	5 cut(s)	102, 490, 861, 2095, 2619
Bsu36I	CCTNAGG	2 cut(s)	469, 783
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
BtgI	CCRYGG	3 cut(s)	63, 653, 1527
BtgZI	GCGATG	1 cut(s)	962
BtsCI	GGATG	8 cut(s)	308, 448, 525, 556, 2129, 2247, 2401, 2716
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	4 cut(s)	377, 947, 1296, 2850
BveI	ACCTGC	1 cut(s)	2760
Cac8I	GCNNGC	5 cut(s)	204, 208, 1186, 1246, 1853
CaiI	CAGNNNCTG	1 cut(s)	2363
CciI	TCATGA	3 cut(s)	193, 2352, 2812
CfoI	GCGC	2 cut(s)	1578, 1824
Cfr10I	RCCGGY	2 cut(s)	206, 433
Cfr13I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
CseI	GACGC	1 cut(s)	68
CspAI	ACCGGT	1 cut(s)	433
CspCI	CAANNNNNGTGG	2 cut(s)	1053, 1088
DriI	GACNNNNNGTC	1 cut(s)	2821
EaeI	YGGCCR	2 cut(s)	583, 1853
Eam1104I	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2065, 2845
Eam1105I	GACNNNNNGTC	1 cut(s)	2821
EarI	CTCTTC	7 cut(s)	9, 143, 231, 1007, 1560, 2065, 2845
EciI	GGCGGA	1 cut(s)	225
Ecl136II	GAGCTC	3 cut(s)	26, 224, 748
Eco130I	CCWWGG	6 cut(s)	63, 93, 1527, 1795, 1921, 2194
Eco147I	AGGCCT	1 cut(s)	1118
Eco24I	GRGCYC	4 cut(s)	28, 226, 750, 1379
Eco32I	GATATC	2 cut(s)	76, 2605
Eco47I	GGWCC	4 cut(s)	19, 328, 726, 2230
Eco53kI	GAGCTC	3 cut(s)	26, 224, 748
Eco57I	CTGAAG	1 cut(s)	2385
Eco81I	CCTNAGG	2 cut(s)	469, 783
Eco88I	CYCGRG	1 cut(s)	1676
EcoICRI	GAGCTC	3 cut(s)	26, 224, 748
EcoO109I	RGGNCCY	1 cut(s)	2230
EcoRII	CCWGG	6 cut(s)	54, 86, 580, 1540, 2065, 2250
EcoRV	GATATC	2 cut(s)	76, 2605
EcoT14I	CCWWGG	6 cut(s)	63, 93, 1527, 1795, 1921, 2194
EcoT22I	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2765
EcoT38I	GRGCYC	4 cut(s)	28, 226, 750, 1379
ErhI	CCWWGG	6 cut(s)	63, 93, 1527, 1795, 1921, 2194
FalI	AAGNNNNNCTT	2 cut(s)	2219, 2251
FaqI	GGGAC	4 cut(s)	336, 1159, 1500, 2091
FauI	CCCGC	4 cut(s)	37, 138, 154, 1856
FbaI	TGATCA	3 cut(s)	403, 661, 2796
FblI	GTMKAC	2 cut(s)	1080, 2522
Fnu4HI	GCNGC	7 cut(s)	1036, 1039, 1334, 1785, 1835, 2589, 2788
FokI	GGATG	8 cut(s)	295, 455, 532, 563, 2116, 2234, 2408, 2723
FriOI	GRGCYC	4 cut(s)	28, 226, 750, 1379
Fsp4HI	GCNGC	7 cut(s)	1036, 1039, 1334, 1785, 1835, 2589, 2788
FspBI	CTAG	6 cut(s)	416, 1319, 1338, 1742, 2058, 2390
GlaI	GCGC	2 cut(s)	1577, 1823
GluI	GCNGC	7 cut(s)	1036, 1039, 1334, 1785, 1835, 2589, 2788
GsaI	CCCAGC	4 cut(s)	1161, 1770, 2055, 2088
HaeIII	GGCC	7 cut(s)	91, 176, 219, 239, 585, 1118, 1855
HapII	CCGG	5 cut(s)	207, 236, 263, 434, 2204
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	1578, 1824
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	2 cut(s)	1576, 1822
HinP1I	GCGC	2 cut(s)	1576, 1822
HincII	GTYRAC	2 cut(s)	1260, 1879
HindII	GTYRAC	2 cut(s)	1260, 1879
HindIII	AAGCTT	3 cut(s)	1024, 1470, 1901
HpaI	GTTAAC	1 cut(s)	1260
HpaII	CCGG	5 cut(s)	207, 236, 263, 434, 2204
HphI	GGTGA	3 cut(s)	448, 1940, 2040
Hpy99I	CGWCG	2 cut(s)	83, 155
HpyAV	CCTTC	4 cut(s)	433, 872, 1442, 1925
HpyCH4III	ACNGT	7 cut(s)	1352, 1456, 1599, 1652, 1883, 2313, 2449
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	8 cut(s)	216, 604, 812, 1023, 1032, 1163, 1212, 2744
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	2 cut(s)	1576, 1822
KpnI	GGTACC	2 cut(s)	388, 2172
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Ksp22I	TGATCA	3 cut(s)	403, 661, 2796
KspAI	GTTAAC	1 cut(s)	1260
LguI	GCTCTTC	3 cut(s)	231, 1007, 2845
LmnI	GCTCC	9 cut(s)	31, 784, 1382, 1531, 1934, 1991, 2254, 2282, 2509
Lsp1109I	GCAGC	6 cut(s)	1025, 1047, 1771, 1846, 2600, 2799
MaeI	CTAG	6 cut(s)	416, 1319, 1338, 1742, 2058, 2390
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	2575
MflI	RGATCY	5 cut(s)	102, 490, 861, 2095, 2619
MhlI	GDGCHC	8 cut(s)	28, 226, 433, 750, 1292, 1379, 2690, 2852
MlsI	TGGCCA	1 cut(s)	1855
MluNI	TGGCCA	1 cut(s)	1855
MlyI	GAGTC	6 cut(s)	404, 610, 1487, 1780, 1957, 2796
MmeI	TCCRAC	2 cut(s)	30, 2658
Mox20I	TGGCCA	1 cut(s)	1855
Mph1103I	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2765
MreI	CGCCGGCG	1 cut(s)	206
MroNI	GCCGGC	1 cut(s)	206
MroXI	GAANNNNTTC	2 cut(s)	1326, 2839
MscI	TGGCCA	1 cut(s)	1855
MseI	TTAA	8 cut(s)	357, 896, 1259, 1416, 1601, 1623, 1776, 2672
MslI	CAYNNNNRTG	3 cut(s)	678, 981, 1650
Msp20I	TGGCCA	1 cut(s)	1855
MspA1I	CMGCKG	2 cut(s)	1038, 1851
MspCI	CTTAAG	1 cut(s)	1415
MspI	CCGG	5 cut(s)	207, 236, 263, 434, 2204
MspR9I	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2067, 2252
Mva1269I	GAATGC	5 cut(s)	306, 1511, 1642, 2388, 2765
MvaI	CCWGG	6 cut(s)	56, 88, 582, 1542, 2067, 2252
MwoI	GCNNNNNNNGC	8 cut(s)	216, 604, 812, 1023, 1032, 1163, 1212, 2744
NaeI	GCCGGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	2 cut(s)	63, 1527
NgoMIV	GCCGGC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	245
NsiI	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2765
NspI	RCATGY	5 cut(s)	413, 1060, 1102, 1188, 1252
OliI	CACNNNNGTG	1 cut(s)	1650
PaeI	GCATGC	1 cut(s)	1188
PagI	TCATGA	3 cut(s)	193, 2352, 2812
PceI	AGGCCT	1 cut(s)	1118
PciI	ACATGT	2 cut(s)	409, 1098
PciSI	GCTCTTC	3 cut(s)	231, 1007, 2845
PctI	GAATGC	5 cut(s)	306, 1511, 1642, 2388, 2765
PdiI	GCCGGC	1 cut(s)	208
PdmI	GAANNNNTTC	2 cut(s)	1326, 2839
PfeI	GAWTC	7 cut(s)	366, 1411, 1842, 1913, 2045, 2285, 2498
PflMI	CCANNNNNTGG	2 cut(s)	500, 1973
PfoI	TCCNGGA	1 cut(s)	2250
PinAI	ACCGGT	1 cut(s)	433
PkrI	GCNGC	7 cut(s)	1037, 1040, 1335, 1786, 1836, 2590, 2789
PleI	GAGTC	6 cut(s)	403, 610, 1487, 1779, 1956, 2796
PpsI	GAGTC	6 cut(s)	403, 610, 1487, 1779, 1956, 2796
PpuMI	RGGWCCY	1 cut(s)	2230
PscI	ACATGT	2 cut(s)	409, 1098
PshBI	ATTAAT	1 cut(s)	1623
Psp124BI	GAGCTC	3 cut(s)	28, 226, 750
Psp5II	RGGWCCY	1 cut(s)	2230
Psp6I	CCWGG	6 cut(s)	54, 86, 580, 1540, 2065, 2250
PspFI	CCCAGC	4 cut(s)	1157, 1766, 2051, 2084
PspGI	CCWGG	6 cut(s)	54, 86, 580, 1540, 2065, 2250
PspPI	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
PspPPI	RGGWCCY	1 cut(s)	2230
PsrI	GAACNNNNNNTAC	2 cut(s)	2301, 2333
PstI	CTGCAG	2 cut(s)	1196, 2757
PstNI	CAGNNNCTG	1 cut(s)	2363
PsuI	RGATCY	5 cut(s)	102, 490, 861, 2095, 2619
PvuII	CAGCTG	1 cut(s)	1038
RseI	CAYNNNNRTG	3 cut(s)	678, 981, 1650
SacI	GAGCTC	3 cut(s)	28, 226, 750
SapI	GCTCTTC	3 cut(s)	231, 1007, 2845
SaqAI	TTAA	8 cut(s)	357, 896, 1259, 1416, 1601, 1623, 1776, 2672
SatI	GCNGC	7 cut(s)	1036, 1039, 1334, 1785, 1835, 2589, 2788
Sau96I	GGNCC	7 cut(s)	19, 90, 174, 238, 328, 726, 2230
SbfI	CCTGCAGG	1 cut(s)	2757
ScaI	AGTACT	2 cut(s)	632, 2164
SchI	GAGTC	6 cut(s)	404, 610, 1487, 1780, 1957, 2796
ScrFI	CCNGG	7 cut(s)	56, 88, 236, 582, 1542, 2067, 2252
SdaI	CCTGCAGG	1 cut(s)	2757
SduI	GDGCHC	8 cut(s)	28, 226, 433, 750, 1292, 1379, 2690, 2852
SfcI	CTRYAG	4 cut(s)	1192, 1389, 1828, 2753
SgrAI	CRCCGGYG	2 cut(s)	206, 433
SinI	GGWCC	4 cut(s)	19, 328, 726, 2230
SmiMI	CAYNNNNRTG	3 cut(s)	678, 981, 1650
SmlI	CTYRAG	8 cut(s)	372, 389, 809, 1415, 1495, 2149, 2416, 2720
SmoI	CTYRAG	8 cut(s)	372, 389, 809, 1415, 1495, 2149, 2416, 2720
SphI	GCATGC	1 cut(s)	1188
Sse8387I	CCTGCAGG	1 cut(s)	2757
SseBI	AGGCCT	1 cut(s)	1118
SsiI	CCGC	9 cut(s)	30, 131, 147, 210, 382, 724, 1213, 1334, 1849
SspI	AATATT	1 cut(s)	1760
SspMI	CTAG	6 cut(s)	416, 1319, 1338, 1742, 2058, 2390
SstI	GAGCTC	3 cut(s)	28, 226, 750
StuI	AGGCCT	1 cut(s)	1118
StyD4I	CCNGG	7 cut(s)	54, 86, 234, 580, 1540, 2065, 2250
StyI	CCWWGG	6 cut(s)	63, 93, 1527, 1795, 1921, 2194
TaaI	ACNGT	7 cut(s)	1352, 1456, 1599, 1652, 1883, 2313, 2449
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	6 cut(s)	78, 189, 398, 1111, 1996, 2296
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	7 cut(s)	412, 457, 630, 1019, 1234, 2060, 2162
TauI	GCSGC	1 cut(s)	1336
TfiI	GAWTC	7 cut(s)	366, 1411, 1842, 1913, 2045, 2285, 2498
Tru1I	TTAA	8 cut(s)	357, 896, 1259, 1416, 1601, 1623, 1776, 2672
Tru9I	TTAA	8 cut(s)	357, 896, 1259, 1416, 1601, 1623, 1776, 2672
TscAI	CASTG	4 cut(s)	384, 954, 1303, 2857
TseI	GCWGC	6 cut(s)	1035, 1038, 1784, 1834, 2588, 2787
TspDTI	ATGAA	8 cut(s)	497, 891, 1022, 1832, 2037, 2178, 2714, 2801
TspGWI	ACGGA	1 cut(s)	2316
TspRI	CASTG	4 cut(s)	384, 954, 1303, 2857
Van91I	CCANNNNNTGG	2 cut(s)	500, 1973
Vha464I	CTTAAG	1 cut(s)	1415
VpaK11BI	GGWCC	4 cut(s)	19, 328, 726, 2230
VspI	ATTAAT	1 cut(s)	1623
XapI	RAATTY	3 cut(s)	795, 1322, 2769
XbaI	TCTAGA	2 cut(s)	1318, 1741
XceI	RCATGY	5 cut(s)	413, 1060, 1102, 1188, 1252
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1069, 2472
XmiI	GTMKAC	2 cut(s)	1080, 2522
XmnI	GAANNNNTTC	2 cut(s)	1326, 2839
XspI	CTAG	6 cut(s)	416, 1319, 1338, 1742, 2058, 2390
ZrmI	AGTACT	2 cut(s)	632, 2164
Zsp2I	ATGCAT	5 cut(s)	895, 978, 1186, 1511, 2765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.