Prupe.5G124900_v2.0.a1

RWP-RK domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
12280768 .. 12283689
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G124900.1

Sequence Viewer

Length: 1341 bp
ATGGAGTTTGATCTTGACCTCGATGCTTTTTCTGACCGTCCTCAATTCAGTTCCTGTATTCCTGATCCGGGAAGGGAAATACCAAGAGAGAATGAGGACAGAAGAATGCTTACATCCCCCTTTTTGGGACTGGAACCTGTTGAAAATCCTAATGCTTATTGCTTAATTAAAGAGAAGATCACTCAAGCTCTGAGACAGCTCAAGGAATTGACTGACCAACATGTTCTAGCTCAGTTTTGGGCACCAGTGAAGAATGGGGGTCGGTATGTGCTCACAACTTCTGGGCAACCCTTTGTTCTTGATCCTCATACTAATGGACTTCATCAGTATAGGATGGCTTCTCTGATGTATATGTTTTCTGTGGATGGAGAGAGTGATGGAATGCTTGGGCTCCCTGGCCGTGTTTTCCAGCAAAAATTGCCAGAATGGACCCCAAATGTTCAGTACTACTCCATCAAAGAGTATCCACGGCTTGGACATGCTCAGCATTACAATGTTCAGGGAACCTTAGCTTTGCCCGTGTTTGAACCCTCTGGACGGTCCTGTGTTGGTGTTCTTGAGCTCATAATGACTTCTCCGAAGATCAGCTATGCTTCTGAGGTTGATAAAGTTTGCAAAGCACTTGAGGCAGTAAGTCTGAAAAGTTCAGAGATATTGGATCATACAAGCATGCAGATTCAAATATGCAATGATGGTCGCCAAACTGCATTGACGGAAATCTTGGAGATACTGACAGTGGTGTGTGAAACTCACAAATTACCGCTTGCTCAGACCTGGGTTCCTTGTATGCATCGCAATGTTTTGGCTTATGGTGGTGGCCTGAAGAAGAGCTGTACTAGCTTTGATGGTAGTTGCATGGAACAGGTCTGCATTTCCACAACCGATGCGGCCTTCTACATCGTCGATGCTCCTATGTGGCATTTTCGAGAGGCCTGTGTTGAGCATCACTTACAAAAGGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCCCGTAACGCATGCTTCTGCAGAGACATTACCCAGTTCTGCAAAACTGATTACCCTTTAGTACACTACGCACGCATGTTTAAGTTAACCAGCTGTTTTGCAATCTGCTTACAGAGCACTCATACTGGAAATGATGATTACATTCTAGAATTTTTTCTTCCCCCGAGCATCACAGACAGTTATGAACAACAAACTTTGTTGGGCTTCTTATTGGCAATAATAAAGAATCATTTCCAGAGTCTCAAGGTTGCTTCTGGAATTATACTTGAAGAGGAAGGGCTTGTCGAAATGGTTCAAGCTTCTACAAACAAGGGACTTGACTCAAGACTTGAATGTATACGTATACCCCGTTAA

Protein Analysis

447

Amino Acids

50.23

Weight (kDa)

5.71

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 473
AccI GTMKAC 2 cut(s) 1324, 1330
AciI CCGC 2 cut(s) 761, 887
AclWI GGATC 3 cut(s) 59, 296, 666
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 1136
AcuI CTGAAG 1 cut(s) 842
AfaI GTAC 3 cut(s) 446, 835, 1050
AfiI CCNNNNNNNGG 5 cut(s) 68, 124, 125, 473, 537
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 6 cut(s) 143, 527, 680, 1256, 1283, 1319
AjnI CCWGG 2 cut(s) 394, 773
Alw21I GWGCWC 3 cut(s) 273, 564, 1106
Alw26I GTCTC 3 cut(s) 187, 1005, 1232
AlwI GGATC 3 cut(s) 59, 296, 666
AlwNI CAGNNNCTG 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 1150
AoxI GGCC 4 cut(s) 397, 817, 888, 930
ApoI RAATTY 1 cut(s) 1136
Asp700I GAANNNNTTC 3 cut(s) 1140, 1217, 1278
AspS9I GGNCC 2 cut(s) 429, 540
AsuC2I CCSGG 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 1150
AvaII GGWCC 2 cut(s) 429, 540
BaeGI GKGCMC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 2 cut(s) 393, 564
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
Bbv12I GWGCWC 3 cut(s) 273, 564, 1106
BccI CCATC 6 cut(s) 328, 359, 371, 461, 686, 839
BceAI ACGGC 2 cut(s) 384, 485
BciT130I CCWGG 2 cut(s) 396, 775
BciVI GTATCC 1 cut(s) 474
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 3 cut(s) 187, 1005, 1232
BfaI CTAG 3 cut(s) 227, 837, 1133
BfmI CTRYAG 1 cut(s) 1006
BfuI GTATCC 1 cut(s) 474
BisI GCNGC 1 cut(s) 888
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 889
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 3 cut(s) 69, 396, 775
Bme18I GGWCC 2 cut(s) 429, 540
BmeT110I CYCGRG 1 cut(s) 1150
BmgT120I GGNCC 2 cut(s) 429, 540
BmiI GGNNCC 6 cut(s) 135, 243, 392, 431, 505, 780
BmrFI CCNGG 3 cut(s) 69, 396, 775
BmrI ACTGGG 1 cut(s) 1015
BmsI GCATC 6 cut(s) 13, 799, 874, 895, 952, 1164
BmuI ACTGGG 1 cut(s) 1015
Bpu10I CCTNAGC 1 cut(s) 508
Bpu1102I GCTNAGC 1 cut(s) 483
BpuEI CTTGAG 6 cut(s) 168, 185, 578, 644, 1214, 1294
BpuMI CCSGG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 1328
BsaJI CCNNGG 3 cut(s) 394, 467, 774
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 124, 125, 473, 537
Bse1I ACTGG 4 cut(s) 135, 245, 1021, 1117
Bse3DI GCAATG 2 cut(s) 694, 802
BseBI CCWGG 2 cut(s) 396, 775
BseDI CCNNGG 3 cut(s) 394, 467, 774
BseGI GGATG 3 cut(s) 113, 339, 370
BseLI CCNNNNNNNGG 5 cut(s) 68, 124, 125, 473, 537
BseMI GCAATG 2 cut(s) 694, 802
BseMII CTCAG 5 cut(s) 182, 245, 497, 588, 782
BseNI ACTGG 4 cut(s) 135, 245, 1021, 1117
BseSI GKGCMC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 971
BshFI GGCC 4 cut(s) 399, 819, 890, 932
BshNI GGYRCC 1 cut(s) 241
BsiHKAI GWGCWC 3 cut(s) 273, 564, 1106
BsiHKCI CYCGRG 1 cut(s) 1150
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 3 cut(s) 141, 973, 1314
BslI CCNNNNNNNGG 5 cut(s) 68, 124, 125, 473, 537
BsmAI GTCTC 3 cut(s) 187, 1005, 1232
BsmFI GGGAC 3 cut(s) 141, 973, 1314
BsmI GAATGC 2 cut(s) 111, 387
BsnI GGCC 4 cut(s) 399, 819, 890, 932
BsoBI CYCGRG 1 cut(s) 1150
Bsp1286I GDGCHC 5 cut(s) 244, 273, 393, 564, 1106
Bsp143I GATC 6 cut(s) 10, 64, 177, 301, 582, 658
Bsp1720I GCTNAGC 1 cut(s) 483
BspACI CCGC 2 cut(s) 761, 887
BspANI GGCC 4 cut(s) 399, 819, 890, 932
BspCNI CTCAG 5 cut(s) 183, 244, 496, 589, 781
BspLI GGNNCC 6 cut(s) 135, 243, 392, 431, 505, 780
BspMAI CTGCAG 1 cut(s) 1010
BspPI GGATC 3 cut(s) 59, 296, 666
BspQI GCTCTTC 1 cut(s) 821
BspT107I GGYRCC 1 cut(s) 241
BsrDI GCAATG 2 cut(s) 694, 802
BsrI ACTGG 4 cut(s) 135, 245, 1021, 1117
BssECI CCNNGG 3 cut(s) 394, 467, 774
BssMI GATC 6 cut(s) 10, 64, 177, 301, 582, 658
BssNAI GTATAC 2 cut(s) 1325, 1331
Bst1107I GTATAC 2 cut(s) 1325, 1331
Bst2UI CCWGG 2 cut(s) 396, 775
Bst4CI ACNGT 4 cut(s) 38, 540, 736, 1166
Bst6I CTCTTC 2 cut(s) 821, 1251
BstAPI GCANNNNNTGC 1 cut(s) 418
BstBAI YACGTR 1 cut(s) 1328
BstC8I GCNNGC 4 cut(s) 671, 765, 1000, 1060
BstDEI CTNAG 6 cut(s) 191, 231, 483, 508, 597, 768
BstDSI CCRYGG 1 cut(s) 467
BstF5I GGATG 3 cut(s) 113, 339, 370
BstKTI GATC 6 cut(s) 13, 67, 180, 304, 585, 661
BstMAI GTCTC 3 cut(s) 187, 1005, 1232
BstMBI GATC 6 cut(s) 10, 64, 177, 301, 582, 658
BstMWI GCNNNNNNNGC 5 cut(s) 418, 626, 837, 977, 1101
BstNI CCWGG 2 cut(s) 396, 775
BstNSI RCATGY 5 cut(s) 224, 482, 673, 1002, 1066
BstSCI CCNGG 3 cut(s) 67, 394, 773
BstSFI CTRYAG 1 cut(s) 1006
BstSLI GKGCMC 1 cut(s) 244
BstSNI TACGTA 1 cut(s) 1328
BstZ17I GTATAC 2 cut(s) 1325, 1331
BsuI GTATCC 1 cut(s) 474
BsuRI GGCC 4 cut(s) 399, 819, 890, 932
BtgI CCRYGG 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 776
BtsCI GGATG 3 cut(s) 113, 339, 370
BtsIMutI CAGTG 2 cut(s) 252, 741
Cac8I GCNNGC 4 cut(s) 671, 765, 1000, 1060
CaiI CAGNNNCTG 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 429, 540
Csp6I GTAC 3 cut(s) 445, 834, 1049
CviAII CATG 6 cut(s) 221, 479, 670, 856, 999, 1063
CviQI GTAC 3 cut(s) 445, 834, 1049
DdeI CTNAG 6 cut(s) 191, 231, 483, 508, 597, 768
DpnI GATC 6 cut(s) 12, 66, 179, 303, 584, 660
DpnII GATC 6 cut(s) 10, 64, 177, 301, 582, 658
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 821, 1251
EarI CTCTTC 2 cut(s) 821, 1251
Ecl136II GAGCTC 1 cut(s) 562
Eco105I TACGTA 1 cut(s) 1328
Eco147I AGGCCT 1 cut(s) 932
Eco24I GRGCYC 2 cut(s) 393, 564
Eco47I GGWCC 2 cut(s) 429, 540
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 842
Eco88I CYCGRG 1 cut(s) 1150
EcoICRI GAGCTC 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 394, 773
EcoT22I ATGCAT 1 cut(s) 792
EcoT38I GRGCYC 2 cut(s) 393, 564
FaeI CATG 6 cut(s) 224, 482, 673, 859, 1002, 1066
FaqI GGGAC 3 cut(s) 141, 973, 1314
FatI CATG 6 cut(s) 220, 478, 669, 855, 998, 1062
FblI GTMKAC 2 cut(s) 1324, 1330
Fnu4HI GCNGC 1 cut(s) 888
FokI GGATG 3 cut(s) 100, 346, 377
FriOI GRGCYC 2 cut(s) 393, 564
Fsp4HI GCNGC 1 cut(s) 888
FspBI CTAG 3 cut(s) 227, 837, 1133
GluI GCNGC 1 cut(s) 888
GsaI CCCAGC 1 cut(s) 975
HaeIII GGCC 4 cut(s) 399, 819, 890, 932
HapII CCGG 1 cut(s) 68
Hin1II CATG 6 cut(s) 224, 482, 673, 859, 1002, 1066
HincII GTYRAC 1 cut(s) 1074
HindII GTYRAC 1 cut(s) 1074
HindIII AAGCTT 1 cut(s) 1284
HinfI GANTC 4 cut(s) 676, 1213, 1225, 1307
HpaI GTTAAC 1 cut(s) 1074
HpaII CCGG 1 cut(s) 68
Hpy166II GTNNAC 4 cut(s) 1051, 1074, 1325, 1331
Hpy188I TCNGA 8 cut(s) 34, 192, 345, 579, 598, 639, 649, 771
Hpy8I GTNNAC 4 cut(s) 1051, 1074, 1325, 1331
Hpy99I CGWCG 1 cut(s) 905
HpyAV CCTTC 3 cut(s) 66, 901, 1256
HpyCH4III ACNGT 4 cut(s) 38, 540, 736, 1166
HpyCH4IV ACGT 1 cut(s) 1327
HpyF10VI GCNNNNNNNGC 5 cut(s) 418, 626, 837, 977, 1101
HpyF3I CTNAG 6 cut(s) 191, 231, 483, 508, 597, 768
HpySE526I ACGT 1 cut(s) 1327
Hsp92II CATG 6 cut(s) 224, 482, 673, 859, 1002, 1066
KspAI GTTAAC 1 cut(s) 1074
Kzo9I GATC 6 cut(s) 10, 64, 177, 301, 582, 658
LguI GCTCTTC 1 cut(s) 821
LmnI GCTCC 2 cut(s) 396, 913
LweI GCATC 6 cut(s) 13, 799, 874, 895, 952, 1164
MaeI CTAG 3 cut(s) 227, 837, 1133
MaeII ACGT 1 cut(s) 1327
MaeIII GTNAC 1 cut(s) 992
MalI GATC 6 cut(s) 12, 66, 179, 303, 584, 660
MboI GATC 6 cut(s) 10, 64, 177, 301, 582, 658
MboII GAAGA 8 cut(s) 114, 187, 262, 592, 835, 838, 1136, 1268
MhlI GDGCHC 5 cut(s) 244, 273, 393, 564, 1106
MluCI AATT 7 cut(s) 44, 165, 206, 416, 755, 1136, 1245
MlyI GAGTC 2 cut(s) 1234, 1301
Mph1103I ATGCAT 1 cut(s) 792
MroXI GAANNNNTTC 3 cut(s) 1140, 1217, 1278
MseI TTAA 5 cut(s) 164, 168, 1068, 1073, 1339
MslI CAYNNNNRTG 3 cut(s) 312, 492, 795
MspA1I CMGCKG 1 cut(s) 1080
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 3 cut(s) 69, 396, 775
Mva1269I GAATGC 2 cut(s) 111, 387
MvaI CCWGG 2 cut(s) 396, 775
MwoI GCNNNNNNNGC 5 cut(s) 418, 626, 837, 977, 1101
NciI CCSGG 1 cut(s) 69
NdeII GATC 6 cut(s) 10, 64, 177, 301, 582, 658
NlaIII CATG 6 cut(s) 224, 482, 673, 859, 1002, 1066
NlaIV GGNNCC 6 cut(s) 135, 243, 392, 431, 505, 780
NsiI ATGCAT 1 cut(s) 792
NspI RCATGY 5 cut(s) 224, 482, 673, 1002, 1066
PacI TTAATTAA 1 cut(s) 168
PaeI GCATGC 2 cut(s) 673, 1002
PceI AGGCCT 1 cut(s) 932
PciI ACATGT 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 821
PcsI WCGNNNNNNNCGW 1 cut(s) 1333
PctI GAATGC 2 cut(s) 111, 387
PdmI GAANNNNTTC 3 cut(s) 1140, 1217, 1278
PfeI GAWTC 2 cut(s) 676, 1213
PflMI CCANNNNNTGG 1 cut(s) 473
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 1 cut(s) 889
PleI GAGTC 2 cut(s) 1233, 1301
PpsI GAGTC 2 cut(s) 1233, 1301
Ppu21I YACGTR 1 cut(s) 1328
PscI ACATGT 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 394, 773
PspFI CCCAGC 1 cut(s) 971
PspGI CCWGG 2 cut(s) 394, 773
PspN4I GGNNCC 6 cut(s) 135, 243, 392, 431, 505, 780
PspPI GGNCC 2 cut(s) 429, 540
PstI CTGCAG 1 cut(s) 1010
PstNI CAGNNNCTG 1 cut(s) 54
PvuII CAGCTG 1 cut(s) 1080
RsaI GTAC 3 cut(s) 446, 835, 1050
RsaNI GTAC 3 cut(s) 445, 834, 1049
RseI CAYNNNNRTG 3 cut(s) 312, 492, 795
SacI GAGCTC 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 821
SaqAI TTAA 5 cut(s) 164, 168, 1068, 1073, 1339
SatI GCNGC 1 cut(s) 888
Sau3AI GATC 6 cut(s) 10, 64, 177, 301, 582, 658
Sau96I GGNCC 2 cut(s) 429, 540
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 2 cut(s) 1234, 1301
ScrFI CCNGG 3 cut(s) 69, 396, 775
SduI GDGCHC 5 cut(s) 244, 273, 393, 564, 1106
SfaNI GCATC 6 cut(s) 13, 799, 874, 895, 952, 1164
SfcI CTRYAG 1 cut(s) 1006
SinI GGWCC 2 cut(s) 429, 540
SmiMI CAYNNNNRTG 3 cut(s) 312, 492, 795
SmlI CTYRAG 6 cut(s) 183, 200, 557, 623, 1229, 1309
SmoI CTYRAG 6 cut(s) 183, 200, 557, 623, 1229, 1309
SnaBI TACGTA 1 cut(s) 1328
SphI GCATGC 2 cut(s) 673, 1002
Sse9I AATT 7 cut(s) 44, 165, 206, 416, 755, 1136, 1245
SseBI AGGCCT 1 cut(s) 932
SsiI CCGC 2 cut(s) 761, 887
SspMI CTAG 3 cut(s) 227, 837, 1133
SstI GAGCTC 1 cut(s) 564
StuI AGGCCT 1 cut(s) 932
StyD4I CCNGG 3 cut(s) 67, 394, 773
TaaI ACNGT 4 cut(s) 38, 540, 736, 1166
TaiI ACGT 1 cut(s) 1330
TaqI TCGA 4 cut(s) 21, 903, 925, 1272
TasI AATT 7 cut(s) 44, 165, 206, 416, 755, 1136, 1245
TatI WGTACW 3 cut(s) 444, 833, 1048
TauI GCSGC 1 cut(s) 890
TfiI GAWTC 2 cut(s) 676, 1213
Tru1I TTAA 5 cut(s) 164, 168, 1068, 1073, 1339
Tru9I TTAA 5 cut(s) 164, 168, 1068, 1073, 1339
TscAI CASTG 2 cut(s) 252, 741
TspDTI ATGAA 2 cut(s) 311, 1185
TspGWI ACGGA 1 cut(s) 728
TspRI CASTG 2 cut(s) 252, 741
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 2 cut(s) 429, 540
XapI RAATTY 1 cut(s) 1136
XbaI TCTAGA 1 cut(s) 1132
XceI RCATGY 5 cut(s) 224, 482, 673, 1002, 1066
XmiI GTMKAC 2 cut(s) 1324, 1330
XmnI GAANNNNTTC 3 cut(s) 1140, 1217, 1278
XspI CTAG 3 cut(s) 227, 837, 1133
ZrmI AGTACT 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.