MD14G1133300.v1.1

RWP-RK domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
21123323 .. 21123697
375 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1133300.v1.1.491

Sequence Viewer

Length: 375 bp
ATGCTGAGTTACGAGGAACTTCTTCTGGAACATAACAGGTGTCTGCGAGACAGGGGTAAAGGCTCAAACACATCCAACAGGGGAAACAGCTCAACGGAGGCAAGTGCTTGTACCTCTACTTGTCATGGTTCATTCCAAGGTAGTCCTGGAAACGGAATTGCCATGGTAAACCCTCCATTTTCAGATTCAGCTCCCAAGCAATCCAACACAATGCCACATATCACGGGCAGGCAAGAAATGAAGAGTGTAACCATAAAGGCGACATATAAAGAAGACATTATTAGGTTTCGCGTGTCGATGAGTTCAGGTTTTGTGGACATGAAAGAGATTAAAACTGGAAGGGGGCACATTCGACATCAAATGTGTGGCTTATGA

Protein Analysis

125

Amino Acids

13.62

Weight (kDa)

9.27

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 291
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 152
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 90, 191
AluI AGCT 2 cut(s) 90, 191
Alw26I GTCTC 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 136, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 136, 162
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 348
Bsh1236I CGCG 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 348
Bsp19I CCATGG 1 cut(s) 162
BspFNI CGCG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 136, 162
BssT1I CCWWGG 2 cut(s) 136, 162
Bst2UI CCWGG 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 71
BstFNI CGCG 1 cut(s) 291
BstMAI GTCTC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 348
BstUI CGCG 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 111
CviAII CATG 3 cut(s) 125, 163, 319
CviJI RGCY 4 cut(s) 63, 90, 191, 369
CviKI_1 RGCY 4 cut(s) 63, 90, 191, 369
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 5
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 136, 162
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 136, 162
ErhI CCWWGG 2 cut(s) 136, 162
FaeI CATG 3 cut(s) 128, 166, 322
FaiI YATR 9 cut(s) 33, 126, 164, 219, 254, 265, 267, 320, 373
FatI CATG 3 cut(s) 124, 162, 318
FokI GGATG 1 cut(s) 58
Hin1II CATG 3 cut(s) 128, 166, 322
HinfI GANTC 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 169, 316
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 169, 316
HpyAV CCTTC 1 cut(s) 333
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 3 cut(s) 128, 166, 322
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 9 cut(s) 11, 22, 37, 64, 132, 159, 214, 291, 321
MaeIII GTNAC 2 cut(s) 8, 247
MboII GAAGA 3 cut(s) 14, 253, 284
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 1 cut(s) 156
MmeI TCCRAC 2 cut(s) 99, 228
MnlI CCTC 4 cut(s) 7, 91, 124, 183
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 162
NlaIII CATG 3 cut(s) 128, 166, 322
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 348
SetI ASST 7 cut(s) 41, 92, 116, 142, 193, 287, 310
Sse9I AATT 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 2 cut(s) 136, 162
TaqI TCGA 2 cut(s) 296, 352
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TspDTI ATGAA 3 cut(s) 120, 254, 335
TspGWI ACGGA 2 cut(s) 110, 168
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.