Rorug06G0472500

Protein of unknown function (DUF2439)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007509
Physical Location & Seq
Reverse (-)
59511561 .. 59514506
2946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0472500.1

Sequence Viewer

Length: 708 bp
ATGCCGCCGTTCTGGTCGACCACGACCTCGAAGGCGGTGGGGTCCTTACTCTCCCGCGGAAATGGATACAGCTCCGCCAGAAAGTTCAATCGGATTCGCCGCCTGAGTAGCATTGCCGGCATAGAGACCCCGTCGGTCCAGAAATCGCGAGTTTTGGCAAATCCTTTTCATGAGCAAAGGAGGCGGTTTTTGGGCTGCGGCGACGGTGAAGAAGGTGGTGTGTTGTCCAAGGTTTACGAGGAGAAGCGCGTCTTGGGGTATTCTCCTGAGCAGTTATTCGATGTGGTTGCTGCTGTAGACTTGTATCATGGTTTTGTCCCCTGGTGCCAGCGGTCAGAGAAAATTCAAACCTATGCGGATGGATCATTTGATGCTGAGCTGGAGATTGGTTTCAAGTTTCTTGTTGAAAGTTACGTGTCCCATGTTGAATTAGAAAGACCAAAGCGTATTAAGACAACTGTGTCAAACAGTACCCTTTTTGATCATCTAATAAACATCTGGGAATTCAATCCTGGACCAGTTCCTGGAGCTTGCAACCTTTATTTCTTGGTGGATTTTAAGTTTCAGTCACCACTTTATAGACAGGTGGCCTCTGTGTTCTTCAAAGAGGTGGTCTCTAAGCTTGTTGGTTCATTCAATGACCGATGCCGGCTGATATATGGACCAGGAGTTCGAGTTCTTGAAAACTCATATGGGCAAAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2439

Protein Analysis

235

Amino Acids

26.53

Weight (kDa)

9.0

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 86 - 212 6.9e-21 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 324
AccB7I CCANNNNNTGG 1 cut(s) 524
AccI GTMKAC 2 cut(s) 17, 297
AccII CGCG 3 cut(s) 57, 148, 249
AclWI GGATC 1 cut(s) 370
AcsI RAATTY 2 cut(s) 342, 503
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 1 cut(s) 524
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 9 cut(s) 88, 347, 394, 407, 428, 508, 604, 637, 683
AjnI CCWGG 4 cut(s) 320, 511, 523, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AloI GAACNNNNNNTCC 4 cut(s) 654, 660, 686, 692
AluBI AGCT 4 cut(s) 72, 379, 530, 622
AluI AGCT 4 cut(s) 72, 379, 530, 622
Alw26I GTCTC 2 cut(s) 119, 619
AlwI GGATC 1 cut(s) 370
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 1 cut(s) 588
ApeKI GCWGC 2 cut(s) 195, 290
ApoI RAATTY 2 cut(s) 342, 503
ArsI GACNNNNNNTTYG 4 cut(s) 597, 629, 654, 686
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 4 cut(s) 42, 136, 515, 662
AsuHPI GGTGA 2 cut(s) 218, 561
AvaII GGWCC 4 cut(s) 42, 136, 515, 662
BanI GGYRCC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 182, 277
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 4 cut(s) 322, 513, 525, 666
BciVI GTATCC 1 cut(s) 59
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 119, 619
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 59
BisI GCNGC 5 cut(s) 5, 100, 196, 199, 291
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 5 cut(s) 6, 101, 197, 200, 292
Bme1390I CCNGG 4 cut(s) 322, 513, 525, 666
Bme18I GGWCC 4 cut(s) 42, 136, 515, 662
BmgT120I GGNCC 4 cut(s) 42, 136, 515, 662
BmiI GGNNCC 2 cut(s) 43, 326
BmrFI CCNGG 4 cut(s) 322, 513, 525, 666
BmsI GCATC 2 cut(s) 361, 635
BplI GAGNNNNNCTC 2 cut(s) 599, 631
BpmI CTGGAG 2 cut(s) 401, 546
Bpu10I CCTNAGC 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 415
BsaI GGTCTC 2 cut(s) 119, 619
BsaJI CCNNGG 3 cut(s) 55, 228, 320
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse118I RCCGGY 2 cut(s) 116, 648
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 4 cut(s) 322, 513, 525, 666
BseDI CCNNGG 3 cut(s) 55, 228, 320
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 524
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 95, 258, 366
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 182, 277
Bsh1236I CGCG 3 cut(s) 57, 148, 249
BshFI GGCC 1 cut(s) 590
BshNI GGYRCC 1 cut(s) 324
BsiSI CCGG 2 cut(s) 117, 649
BslFI GGGAC 2 cut(s) 302, 403
BslI CCNNNNNNNGG 1 cut(s) 524
BsmAI GTCTC 2 cut(s) 119, 619
BsmFI GGGAC 2 cut(s) 302, 403
BsnI GGCC 1 cut(s) 590
Bso31I GGTCTC 2 cut(s) 119, 619
Bsp143I GATC 2 cut(s) 362, 481
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp68I TCGCGA 1 cut(s) 148
BspANI GGCC 1 cut(s) 590
BspCNI CTCAG 3 cut(s) 96, 259, 367
BspFNI CGCG 3 cut(s) 57, 148, 249
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 43, 326
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 324
BspTNI GGTCTC 2 cut(s) 119, 619
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 116, 648
BsrI ACTGG 1 cut(s) 518
BssAI RCCGGY 2 cut(s) 116, 648
BssECI CCNNGG 3 cut(s) 55, 228, 320
BssMI GATC 2 cut(s) 362, 481
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 4 cut(s) 322, 513, 525, 666
Bst4CI ACNGT 3 cut(s) 206, 460, 470
BstBAI YACGTR 1 cut(s) 415
BstC8I GCNNGC 4 cut(s) 118, 329, 532, 650
BstDEI CTNAG 4 cut(s) 104, 267, 375, 618
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 3 cut(s) 57, 148, 249
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 2 cut(s) 365, 484
BstMAI GTCTC 2 cut(s) 119, 619
BstMBI GATC 2 cut(s) 362, 481
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 181
BstNI CCWGG 4 cut(s) 322, 513, 525, 666
BstSCI CCNGG 4 cut(s) 320, 511, 523, 664
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 3 cut(s) 57, 148, 249
BstV1I GCAGC 2 cut(s) 182, 277
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 590
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 364
BtuMI TCGCGA 1 cut(s) 148
Cac8I GCNNGC 4 cut(s) 118, 329, 532, 650
CaiI CAGNNNCTG 1 cut(s) 524
CciI TCATGA 1 cut(s) 169
CfoI GCGC 1 cut(s) 249
Cfr10I RCCGGY 2 cut(s) 116, 648
Cfr13I GGNCC 4 cut(s) 42, 136, 515, 662
Cfr42I CCGCGG 1 cut(s) 58
CseI GACGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 471
CviAII CATG 4 cut(s) 170, 308, 422, 705
CviJI RGCY 7 cut(s) 72, 195, 379, 530, 590, 622, 652
CviKI_1 RGCY 7 cut(s) 72, 195, 379, 530, 590, 622, 652
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 4 cut(s) 104, 267, 375, 618
DpnI GATC 2 cut(s) 364, 483
DpnII GATC 2 cut(s) 362, 481
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 228
Eco31I GGTCTC 2 cut(s) 119, 619
Eco47I GGWCC 4 cut(s) 42, 136, 515, 662
EcoO109I RGGNCCY 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 503
EcoRII CCWGG 4 cut(s) 320, 511, 523, 664
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 4 cut(s) 173, 311, 425, 708
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 302, 403
FatI CATG 4 cut(s) 169, 307, 421, 704
FauI CCCGC 1 cut(s) 62
FauNDI CATATG 1 cut(s) 691
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 2 cut(s) 17, 297
Fnu4HI GCNGC 5 cut(s) 5, 100, 196, 199, 291
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 5 cut(s) 5, 100, 196, 199, 291
GlaI GCGC 1 cut(s) 248
GluI GCNGC 5 cut(s) 5, 100, 196, 199, 291
GsuI CTGGAG 2 cut(s) 401, 546
HaeIII GGCC 1 cut(s) 590
HapII CCGG 2 cut(s) 117, 649
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 249
Hin1II CATG 4 cut(s) 173, 311, 425, 708
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 1 cut(s) 94
HpaII CCGG 2 cut(s) 117, 649
HphI GGTGA 2 cut(s) 218, 561
Hpy166II GTNNAC 3 cut(s) 18, 235, 298
Hpy188I TCNGA 2 cut(s) 93, 337
Hpy188III TCNNGA 5 cut(s) 139, 147, 170, 266, 680
Hpy8I GTNNAC 3 cut(s) 18, 235, 298
Hpy99I CGWCG 2 cut(s) 136, 206
HpyAV CCTTC 2 cut(s) 25, 206
HpyCH4III ACNGT 3 cut(s) 206, 460, 470
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 2 cut(s) 534, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 181
HpyF3I CTNAG 4 cut(s) 104, 267, 375, 618
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 4 cut(s) 173, 311, 425, 708
HspAI GCGC 1 cut(s) 247
KroI GCCGGC 2 cut(s) 116, 648
KroNI GCCGGC 2 cut(s) 118, 650
Ksp22I TGATCA 1 cut(s) 481
KspI CCGCGG 1 cut(s) 58
Kzo9I GATC 2 cut(s) 362, 481
LmnI GCTCC 2 cut(s) 77, 527
Lsp1109I GCAGC 2 cut(s) 182, 277
LweI GCATC 2 cut(s) 361, 635
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 410, 567
MalI GATC 2 cut(s) 364, 483
MboI GATC 2 cut(s) 362, 481
MboII GAAGA 2 cut(s) 221, 592
MluCI AATT 3 cut(s) 342, 428, 503
MnlI CCTC 5 cut(s) 37, 174, 232, 601, 601
MroNI GCCGGC 2 cut(s) 116, 648
MseI TTAA 2 cut(s) 450, 558
MspA1I CMGCKG 2 cut(s) 57, 331
MspI CCGG 2 cut(s) 117, 649
MspR9I CCNGG 4 cut(s) 322, 513, 525, 666
MvaI CCWGG 4 cut(s) 322, 513, 525, 666
MvnI CGCG 3 cut(s) 57, 148, 249
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 181
NaeI GCCGGC 2 cut(s) 118, 650
NdeI CATATG 1 cut(s) 691
NdeII GATC 2 cut(s) 362, 481
NgoMIV GCCGGC 2 cut(s) 116, 648
NlaIII CATG 4 cut(s) 173, 311, 425, 708
NlaIV GGNNCC 2 cut(s) 43, 326
NmuCI GTSAC 1 cut(s) 567
NruI TCGCGA 1 cut(s) 148
PagI TCATGA 1 cut(s) 169
PdiI GCCGGC 2 cut(s) 118, 650
PfeI GAWTC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 524
PfoI TCCNGGA 2 cut(s) 511, 523
PkrI GCNGC 5 cut(s) 6, 101, 197, 200, 292
Ppu21I YACGTR 1 cut(s) 415
PpuMI RGGWCCY 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 4 cut(s) 320, 511, 523, 664
PspGI CCWGG 4 cut(s) 320, 511, 523, 664
PspN4I GGNNCC 2 cut(s) 43, 326
PspPI GGNCC 4 cut(s) 42, 136, 515, 662
PspPPI RGGWCCY 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 524
PsyI GACNNNGTC 1 cut(s) 130
RruI TCGCGA 1 cut(s) 148
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
SacII CCGCGG 1 cut(s) 58
SalI GTCGAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 450, 558
SatI GCNGC 5 cut(s) 5, 100, 196, 199, 291
Sau3AI GATC 2 cut(s) 362, 481
Sau96I GGNCC 4 cut(s) 42, 136, 515, 662
ScrFI CCNGG 4 cut(s) 322, 513, 525, 666
SfaNI GCATC 2 cut(s) 361, 635
SfcI CTRYAG 1 cut(s) 294
Sfr303I CCGCGG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 58
SinI GGWCC 4 cut(s) 42, 136, 515, 662
Sse9I AATT 3 cut(s) 342, 428, 503
StyD4I CCNGG 4 cut(s) 320, 511, 523, 664
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 206, 460, 470
TaiI ACGT 1 cut(s) 417
TaqI TCGA 4 cut(s) 17, 29, 279, 673
TaqII GACCGA 2 cut(s) 124, 657
TasI AATT 3 cut(s) 342, 428, 503
TauI GCSGC 3 cut(s) 7, 102, 201
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 450, 558
Tru9I TTAA 2 cut(s) 450, 558
TseFI GTSAC 1 cut(s) 567
TseI GCWGC 2 cut(s) 195, 290
Tsp45I GTSAC 1 cut(s) 567
TspDTI ATGAA 2 cut(s) 158, 621
Tth111I GACNNNGTC 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 524
VpaK11BI GGWCC 4 cut(s) 42, 136, 515, 662
XapI RAATTY 2 cut(s) 342, 503
XmiI GTMKAC 2 cut(s) 17, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.