Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007509

Physical Location & Seq

Genomic Coordinates Reverse (-)

6183261 .. 6185244

Gene Structure 1984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG085100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCAGAAAATGCTTTCTTCCTCTTTGGTTTCTTCTGCCCCGAAAGAAGCTTCACACAATGATGAACTCTTCATGAAGCAGACAGTTCTCTTCTCAGAGAATCTGAATGAATTGAAGAATCTGAGGAAACAGTTGTATTCAGCAGCCGAATATTTCGAAATATCCTACAGCAAAGAAGATCAGAAACAATTTGTGGTGGAGACCTTGAAAGATTATGTCATCAAAGCAGTTATCAAGACAGTGGACCACTTGGGTTCAGTGGCATACAAAGTCGATGGATTTTTGGATGAAAAAGTCAGTGAAGTTTCAGAACCTGAGCTTAGGCTCTCTTGCCTTGAACAGCGACTGAGGACATGCCGAGACTTTAGCACTCAAAGAGGCTTATTCCAACATTCCTTTGCCATAAACTTTCCTAAGCACCATAAGCGATATATCTTGCCAGGTGGAGCAACTACTCATACTGTTGGCCAGTCTGCATTGATATATCATAGTGCTCAAGGGGACTTGTCTGGGACTAATACTGCAACAACAAGGGAGACCTCTCCAACAGTTGTCAGTGAAGAGTATTCATTGATGCATTCTCCAGAATCTTCACCTGGAGCTTTTCAGTTCACAAGAATCGGATCCAAACATGAGAAACGAACAGTCTCACCACTTAGGTTTCCAATTCCAATGTGTGGCTCTGTTAAGAGATCAAGCACTCTGAACTCTTCTTCTAGTGCCAAACTGCGGTACCCATCGGATCCTCGGACTAGGAGATCAGCTTCGTTATCCCTTTATAATGAAAGAGACAGGACTAAAGACATTGAAGTGGATTCAAGCAAAAATAAACGATTCTATAAGGCCTTACTGAGCATGGGCAAATCTAGAAATGATACTGCATTGTACAAATATTTGGATAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

34.22

Weight (kDa)

9.41

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640
malus_domestica	MD14G1132900.v1.1
prunus_persica	Prupe.5G124400_v2.0.a1 Prupe.5G124400_v2.0.a1
pyrus_communis	pycom07g26600
rosa_chinensis	RchiOBHm_Chr7g0186151
rosa_laevigata	RLG00000004860
rosa_multiflora	Rmu_co8365319.1_g000001 Rmu_sc0025540.1_g000001 Rmu_sc0025541.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268380
rosa_rugosa	Rorug06G0472300 Rorug06G0472400 Rorug06G0472500
rosa_samantha	Rh7AG069100 Rh7BG085100 Rh7CG079000 Rh7DG079100
rosa_wichuraiana	Rw7G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
Acc65I	GGTACC	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	732
AccB7I	CCANNNNNTGG	1 cut(s)	677
AciI	CCGC	1 cut(s)	730
AclWI	GGATC	4 cut(s)	618, 631, 737, 750
AcoI	YGGCCR	1 cut(s)	466
AfaI	GTAC	2 cut(s)	734, 887
AfiI	CCNNNNNNNGG	2 cut(s)	677, 729
AgsI	TTSAA	5 cut(s)	115, 208, 338, 809, 819
AjnI	CCWGG	2 cut(s)	439, 595
AluBI	AGCT	4 cut(s)	50, 319, 602, 764
AluI	AGCT	4 cut(s)	50, 319, 602, 764
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	5 cut(s)	194, 354, 530, 652, 783
AlwI	GGATC	4 cut(s)	618, 631, 737, 750
AlwNI	CAGNNNCTG	2 cut(s)	314, 346
AoxI	GGCC	2 cut(s)	466, 843
ApeKI	GCWGC	1 cut(s)	143
Asp718I	GGTACC	1 cut(s)	732
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	585, 642
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	716, 749
BalI	TGGCCA	1 cut(s)	468
BamHI	GGATCC	2 cut(s)	623, 742
BanI	GGYRCC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	269, 745
BciT130I	CCWGG	2 cut(s)	441, 597
BcoDI	GTCTC	5 cut(s)	194, 354, 530, 652, 783
BfaI	CTAG	3 cut(s)	717, 753, 867
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	441, 597
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	3 cut(s)	625, 734, 744
BmrFI	CCNGG	2 cut(s)	441, 597
BmsI	GCATC	1 cut(s)	564
BpmI	CTGGAG	2 cut(s)	567, 618
Bpu10I	CCTNAGC	3 cut(s)	315, 320, 414
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	480
BsaI	GGTCTC	2 cut(s)	194, 530
BsaJI	CCNNGG	1 cut(s)	746
Bsc4I	CCNNNNNNNGG	2 cut(s)	677, 729
Bse1I	ACTGG	1 cut(s)	469
BseBI	CCWGG	2 cut(s)	441, 597
BseDI	CCNNGG	1 cut(s)	746
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	677, 729
BseMII	CTCAG	5 cut(s)	108, 113, 306, 338, 842
BseNI	ACTGG	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	155
BshFI	GGCC	2 cut(s)	468, 845
BshNI	GGYRCC	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	496
BslFI	GGGAC	2 cut(s)	515, 526
BslI	CCNNNNNNNGG	2 cut(s)	677, 729
BsmAI	GTCTC	5 cut(s)	194, 354, 530, 652, 783
BsmFI	GGGAC	2 cut(s)	515, 526
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	468, 845
Bso31I	GGTCTC	2 cut(s)	194, 530
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	5 cut(s)	178, 623, 692, 742, 758
BspACI	CCGC	1 cut(s)	730
BspANI	GGCC	2 cut(s)	468, 845
BspCNI	CTCAG	5 cut(s)	107, 114, 307, 339, 843
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	3 cut(s)	625, 734, 744
BspPI	GGATC	4 cut(s)	618, 631, 737, 750
BspT104I	TTCGAA	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	732
BspTNI	GGTCTC	2 cut(s)	194, 530
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	746
BssMI	GATC	5 cut(s)	178, 623, 692, 742, 758
Bst2UI	CCWGG	2 cut(s)	441, 597
Bst4CI	ACNGT	6 cut(s)	85, 132, 241, 463, 550, 646
Bst6I	CTCTTC	4 cut(s)	74, 95, 555, 715
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	885
BstBI	TTCGAA	1 cut(s)	156
BstDEI	CTNAG	8 cut(s)	94, 122, 315, 320, 347, 414, 656, 851
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	5 cut(s)	181, 626, 695, 745, 761
BstMAI	GTCTC	5 cut(s)	194, 354, 530, 652, 783
BstMBI	GATC	5 cut(s)	178, 623, 692, 742, 758
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 424
BstNI	CCWGG	2 cut(s)	441, 597
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	439, 595
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	2 cut(s)	623, 742
BstYI	RGATCY	2 cut(s)	623, 742
BsuRI	GGCC	2 cut(s)	468, 845
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	4 cut(s)	246, 264, 304, 562
CaiI	CAGNNNCTG	2 cut(s)	314, 346
CciI	TCATGA	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	733, 886
CviAII	CATG	4 cut(s)	73, 354, 632, 856
CviQI	GTAC	2 cut(s)	733, 886
DdeI	CTNAG	8 cut(s)	94, 122, 315, 320, 347, 414, 656, 851
DpnI	GATC	5 cut(s)	180, 625, 694, 744, 760
DpnII	GATC	5 cut(s)	178, 623, 692, 742, 758
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	4 cut(s)	74, 95, 555, 715
EarI	CTCTTC	4 cut(s)	74, 95, 555, 715
Eco147I	AGGCCT	1 cut(s)	845
Eco31I	GGTCTC	2 cut(s)	194, 530
Eco47I	GGWCC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	439, 595
EcoT22I	ATGCAT	1 cut(s)	579
FaeI	CATG	4 cut(s)	76, 357, 635, 859
FaqI	GGGAC	2 cut(s)	515, 526
FatI	CATG	4 cut(s)	72, 353, 631, 855
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	3 cut(s)	717, 753, 867
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	2 cut(s)	567, 618
HaeIII	GGCC	2 cut(s)	468, 845
Hin1II	CATG	4 cut(s)	76, 357, 635, 859
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	6 cut(s)	100, 118, 587, 618, 815, 834
HphI	GGTGA	2 cut(s)	585, 642
Hpy166II	GTNNAC	2 cut(s)	244, 612
Hpy188I	TCNGA	9 cut(s)	97, 105, 123, 183, 310, 623, 705, 742, 750
Hpy188III	TCNNGA	4 cut(s)	73, 235, 584, 867
Hpy8I	GTNNAC	2 cut(s)	244, 612
HpyCH4III	ACNGT	6 cut(s)	85, 132, 241, 463, 550, 646
HpyCH4V	TGCA	5 cut(s)	4, 476, 524, 577, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 424
HpyF3I	CTNAG	8 cut(s)	94, 122, 315, 320, 347, 414, 656, 851
Hsp92II	CATG	4 cut(s)	76, 357, 635, 859
KpnI	GGTACC	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	178, 623, 692, 742, 758
LmnI	GCTCC	2 cut(s)	446, 599
LpnPI	CCDG	9 cut(s)	327, 426, 453, 482, 495, 582, 597, 609, 778
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	3 cut(s)	717, 753, 867
MalI	GATC	5 cut(s)	180, 625, 694, 744, 760
MboI	GATC	5 cut(s)	178, 623, 692, 742, 758
MflI	RGATCY	2 cut(s)	623, 742
MhlI	GDGCHC	1 cut(s)	496
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	4 cut(s)	110, 188, 666, 904
MluNI	TGGCCA	1 cut(s)	468
MmeI	TCCRAC	2 cut(s)	412, 569
MnlI	CCTC	6 cut(s)	31, 117, 342, 371, 550, 756
Mox20I	TGGCCA	1 cut(s)	468
Mph1103I	ATGCAT	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	2 cut(s)	687, 907
MslI	CAYNNNNRTG	2 cut(s)	60, 809
Msp20I	TGGCCA	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	441, 597
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	2 cut(s)	441, 597
MwoI	GCNNNNNNNGC	2 cut(s)	10, 424
NdeII	GATC	5 cut(s)	178, 623, 692, 742, 758
NlaIII	CATG	4 cut(s)	76, 357, 635, 859
NlaIV	GGNNCC	3 cut(s)	625, 734, 744
NmeAIII	GCCGAG	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	579
NspI	RCATGY	1 cut(s)	357
NspV	TTCGAA	1 cut(s)	156
PagI	TCATGA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	845
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	6 cut(s)	100, 118, 587, 618, 815, 834
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	780
Psp6I	CCWGG	2 cut(s)	439, 595
PspGI	CCWGG	2 cut(s)	439, 595
PspN4I	GGNNCC	3 cut(s)	625, 734, 744
PspPI	GGNCC	1 cut(s)	244
PstNI	CAGNNNCTG	2 cut(s)	314, 346
PsuI	RGATCY	2 cut(s)	623, 742
RsaI	GTAC	2 cut(s)	734, 887
RsaNI	GTAC	2 cut(s)	733, 886
RseI	CAYNNNNRTG	2 cut(s)	60, 809
SaqAI	TTAA	2 cut(s)	687, 907
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	5 cut(s)	178, 623, 692, 742, 758
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	441, 597
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	564
SfcI	CTRYAG	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	60, 809
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	4 cut(s)	110, 188, 666, 904
SseBI	AGGCCT	1 cut(s)	845
SsiI	CCGC	1 cut(s)	730
SspI	AATATT	2 cut(s)	152, 893
SspMI	CTAG	3 cut(s)	717, 753, 867
StuI	AGGCCT	1 cut(s)	845
StyD4I	CCNGG	2 cut(s)	439, 595
TaaI	ACNGT	6 cut(s)	85, 132, 241, 463, 550, 646
TaqI	TCGA	2 cut(s)	156, 273
TasI	AATT	4 cut(s)	110, 188, 666, 904
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	6 cut(s)	100, 118, 587, 618, 815, 834
Tru1I	TTAA	2 cut(s)	687, 907
Tru9I	TTAA	2 cut(s)	687, 907
TscAI	CASTG	4 cut(s)	246, 264, 304, 562
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	7 cut(s)	61, 78, 89, 123, 303, 558, 798
TspRI	CASTG	4 cut(s)	246, 264, 304, 562
Van91I	CCANNNNNTGG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	244
XbaI	TCTAGA	1 cut(s)	866
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	3 cut(s)	717, 753, 867
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.