Rw7G006580

ABIL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007509
Physical Location & Seq
Forward (+)
5618260 .. 5620235
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006580.1

Sequence Viewer

Length: 909 bp
ATGCAGAAAATGCTTTCTTCCTCTTTGGTTTCTTCTGCCCCGAAAGAAGCTTCACACAATGATGAACTCTTCATGAAGCAGACGGTTCTCTTCTCAGAGAATCTGAATGAATTGAAGAATCTGAGGAAACAGTTGTATTCAGCAGCCGAATATTTTGAAATATCCTACAGCAAAGAAGATCAGAAACAATTTGTGGTGGAGACCTTGAAAGATTATGTCATCAAAGCAGTTATCAATACAGTGGACCACCTGGGTTCAGTGGCATACAAAGTCGATGGATTTTTGGATGAAAAAGTCAGTGAAGTTTCAGAACCTGAGCTTAGGCTCTCTTGCCTTGAACAGCGACTGAGGACATGCCGAGACTTTAGCACTCAAAGAGGCTTATTCCAACATTCCTTTGCCATAAACTTTCCTAAGCACCATAAGCGATATATCTTGCCAGGTGGAGCAACCACTCATACTGTTGGCCAGTCTGCATTGATATATCATAGTGCTCAAGGGGACTTGTCTGGGACTAATACTGCAACAACAAGGGAGACCTCTCCAACAGTTGTCAGTGAAGAGTATTCATTAATGCATTCTCCAGAATCTTCACCTGGAGCATTTCAGTTCACAAGAATCGGATCCAAACATGAGAAACGAACAGTCTCACCACTTAGGTTTCCAATTCCACGGTGTGGCTCTGTTAACAGATCAAGCACTCTGAACTCTTCTTCTAGTGCCAAACTGCGGTACCCATCGGAGCCTCGGACTAGGAGATCAGCTTCGTTATCCCTTTATAATGAAAGAGACAGGACTAAAGACATTGAAGTGGATTCAAGCAAAAATAAACGATTCTATAAGGCCTTACTGAGCATGGGCAAATCTAGAAATGATACTGCATTGTACAAATATTTGGATAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

302

Amino Acids

34.23

Weight (kDa)

9.37

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
Acc65I GGTACC 1 cut(s) 732
AccB1I GGYRCC 1 cut(s) 732
AccB7I CCANNNNNTGG 1 cut(s) 677
AciI CCGC 1 cut(s) 730
AclWI GGATC 2 cut(s) 618, 631
AcoI YGGCCR 1 cut(s) 466
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 2 cut(s) 734, 887
AfiI CCNNNNNNNGG 2 cut(s) 677, 729
AgsI TTSAA 6 cut(s) 115, 158, 208, 338, 809, 819
AjnI CCWGG 3 cut(s) 249, 439, 595
AluBI AGCT 3 cut(s) 50, 319, 764
AluI AGCT 3 cut(s) 50, 319, 764
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 5 cut(s) 194, 354, 530, 652, 783
AlwI GGATC 2 cut(s) 618, 631
AlwNI CAGNNNCTG 2 cut(s) 314, 346
AoxI GGCC 2 cut(s) 466, 843
ApeKI GCWGC 1 cut(s) 143
AseI ATTAAT 1 cut(s) 572
Asp718I GGTACC 1 cut(s) 732
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 585, 642
AvaII GGWCC 1 cut(s) 244
BaeI ACNNNNGTAYC 2 cut(s) 716, 749
BalI TGGCCA 1 cut(s) 468
BamHI GGATCC 1 cut(s) 623
BanI GGYRCC 1 cut(s) 732
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 269, 745
BciT130I CCWGG 3 cut(s) 251, 441, 597
BcoDI GTCTC 5 cut(s) 194, 354, 530, 652, 783
BfaI CTAG 3 cut(s) 717, 753, 867
BfmI CTRYAG 1 cut(s) 166
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 3 cut(s) 251, 441, 597
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 3 cut(s) 625, 734, 744
BmrFI CCNGG 3 cut(s) 251, 441, 597
BpmI CTGGAG 2 cut(s) 567, 618
Bpu10I CCTNAGC 3 cut(s) 315, 320, 414
BpuEI CTTGAG 1 cut(s) 480
BsaI GGTCTC 2 cut(s) 194, 530
BsaJI CCNNGG 3 cut(s) 250, 671, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 677, 729
Bse1I ACTGG 1 cut(s) 469
BseBI CCWGG 3 cut(s) 251, 441, 597
BseDI CCNNGG 3 cut(s) 250, 671, 746
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 677, 729
BseMII CTCAG 5 cut(s) 108, 113, 306, 338, 842
BseNI ACTGG 1 cut(s) 469
BseXI GCAGC 1 cut(s) 155
BshFI GGCC 2 cut(s) 468, 845
BshNI GGYRCC 1 cut(s) 732
BsiHKAI GWGCWC 1 cut(s) 496
BslFI GGGAC 2 cut(s) 515, 526
BslI CCNNNNNNNGG 2 cut(s) 677, 729
BsmAI GTCTC 5 cut(s) 194, 354, 530, 652, 783
BsmFI GGGAC 2 cut(s) 515, 526
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 2 cut(s) 468, 845
Bso31I GGTCTC 2 cut(s) 194, 530
Bsp1286I GDGCHC 1 cut(s) 496
Bsp1407I TGTACA 1 cut(s) 885
Bsp143I GATC 4 cut(s) 178, 623, 692, 758
BspACI CCGC 1 cut(s) 730
BspANI GGCC 2 cut(s) 468, 845
BspCNI CTCAG 5 cut(s) 107, 114, 307, 339, 843
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 625, 734, 744
BspPI GGATC 2 cut(s) 618, 631
BspT107I GGYRCC 1 cut(s) 732
BspTNI GGTCTC 2 cut(s) 194, 530
BsrGI TGTACA 1 cut(s) 885
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 3 cut(s) 250, 671, 746
BssMI GATC 4 cut(s) 178, 623, 692, 758
Bst2UI CCWGG 3 cut(s) 251, 441, 597
Bst4CI ACNGT 7 cut(s) 85, 132, 241, 463, 550, 646, 675
Bst6I CTCTTC 4 cut(s) 74, 95, 555, 715
BstAPI GCANNNNNTGC 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 885
BstDEI CTNAG 8 cut(s) 94, 122, 315, 320, 347, 414, 656, 851
BstDSI CCRYGG 1 cut(s) 671
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 4 cut(s) 181, 626, 695, 761
BstMAI GTCTC 5 cut(s) 194, 354, 530, 652, 783
BstMBI GATC 4 cut(s) 178, 623, 692, 758
BstMWI GCNNNNNNNGC 2 cut(s) 10, 424
BstNI CCWGG 3 cut(s) 251, 441, 597
BstNSI RCATGY 1 cut(s) 357
BstSCI CCNGG 3 cut(s) 249, 439, 595
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BsuRI GGCC 2 cut(s) 468, 845
BtgI CCRYGG 1 cut(s) 671
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 4 cut(s) 246, 264, 304, 562
CaiI CAGNNNCTG 2 cut(s) 314, 346
CciI TCATGA 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 733, 886
CviAII CATG 4 cut(s) 73, 354, 632, 856
CviQI GTAC 2 cut(s) 733, 886
DdeI CTNAG 8 cut(s) 94, 122, 315, 320, 347, 414, 656, 851
DpnI GATC 4 cut(s) 180, 625, 694, 760
DpnII GATC 4 cut(s) 178, 623, 692, 758
DraIII CACNNNGTG 1 cut(s) 677
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 4 cut(s) 74, 95, 555, 715
EarI CTCTTC 4 cut(s) 74, 95, 555, 715
Eco147I AGGCCT 1 cut(s) 845
Eco31I GGTCTC 2 cut(s) 194, 530
Eco47I GGWCC 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 249, 439, 595
EcoT22I ATGCAT 1 cut(s) 579
FaeI CATG 4 cut(s) 76, 357, 635, 859
FaqI GGGAC 2 cut(s) 515, 526
FatI CATG 4 cut(s) 72, 353, 631, 855
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 3 cut(s) 717, 753, 867
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 2 cut(s) 567, 618
HaeIII GGCC 2 cut(s) 468, 845
Hin1II CATG 4 cut(s) 76, 357, 635, 859
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 6 cut(s) 100, 118, 587, 618, 815, 834
HpaI GTTAAC 1 cut(s) 688
HphI GGTGA 2 cut(s) 585, 642
Hpy166II GTNNAC 3 cut(s) 244, 612, 688
Hpy188I TCNGA 9 cut(s) 97, 105, 123, 183, 310, 623, 705, 742, 750
Hpy188III TCNNGA 3 cut(s) 73, 584, 867
Hpy8I GTNNAC 3 cut(s) 244, 612, 688
HpyCH4III ACNGT 7 cut(s) 85, 132, 241, 463, 550, 646, 675
HpyCH4V TGCA 5 cut(s) 4, 476, 524, 577, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 424
HpyF3I CTNAG 8 cut(s) 94, 122, 315, 320, 347, 414, 656, 851
Hsp92II CATG 4 cut(s) 76, 357, 635, 859
KpnI GGTACC 1 cut(s) 736
KspAI GTTAAC 1 cut(s) 688
Kzo9I GATC 4 cut(s) 178, 623, 692, 758
LmnI GCTCC 3 cut(s) 446, 599, 742
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 3 cut(s) 717, 753, 867
MalI GATC 4 cut(s) 180, 625, 694, 760
MboI GATC 4 cut(s) 178, 623, 692, 758
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 1 cut(s) 496
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 3 cut(s) 110, 188, 666
MluNI TGGCCA 1 cut(s) 468
MmeI TCCRAC 2 cut(s) 412, 569
MnlI CCTC 6 cut(s) 31, 117, 342, 371, 550, 756
Mox20I TGGCCA 1 cut(s) 468
Mph1103I ATGCAT 1 cut(s) 579
MscI TGGCCA 1 cut(s) 468
MseI TTAA 2 cut(s) 572, 687
MslI CAYNNNNRTG 2 cut(s) 60, 809
Msp20I TGGCCA 1 cut(s) 468
MspR9I CCNGG 3 cut(s) 251, 441, 597
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 3 cut(s) 251, 441, 597
MwoI GCNNNNNNNGC 2 cut(s) 10, 424
NdeII GATC 4 cut(s) 178, 623, 692, 758
NlaIII CATG 4 cut(s) 76, 357, 635, 859
NlaIV GGNNCC 3 cut(s) 625, 734, 744
NmeAIII GCCGAG 1 cut(s) 383
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 1 cut(s) 357
PagI TCATGA 1 cut(s) 72
PceI AGGCCT 1 cut(s) 845
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 6 cut(s) 100, 118, 587, 618, 815, 834
PflMI CCANNNNNTGG 1 cut(s) 677
PkrI GCNGC 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 572
PsiI TTATAA 1 cut(s) 780
Psp6I CCWGG 3 cut(s) 249, 439, 595
PspGI CCWGG 3 cut(s) 249, 439, 595
PspN4I GGNNCC 3 cut(s) 625, 734, 744
PspPI GGNCC 1 cut(s) 244
PstNI CAGNNNCTG 2 cut(s) 314, 346
PsuI RGATCY 1 cut(s) 623
RsaI GTAC 2 cut(s) 734, 887
RsaNI GTAC 2 cut(s) 733, 886
RseI CAYNNNNRTG 2 cut(s) 60, 809
SaqAI TTAA 2 cut(s) 572, 687
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 4 cut(s) 178, 623, 692, 758
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 3 cut(s) 251, 441, 597
SduI GDGCHC 1 cut(s) 496
SfcI CTRYAG 1 cut(s) 166
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 60, 809
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
Sse9I AATT 3 cut(s) 110, 188, 666
SseBI AGGCCT 1 cut(s) 845
SsiI CCGC 1 cut(s) 730
SspI AATATT 2 cut(s) 152, 893
SspMI CTAG 3 cut(s) 717, 753, 867
StuI AGGCCT 1 cut(s) 845
StyD4I CCNGG 3 cut(s) 249, 439, 595
TaaI ACNGT 7 cut(s) 85, 132, 241, 463, 550, 646, 675
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 110, 188, 666
TatI WGTACW 1 cut(s) 885
TfiI GAWTC 6 cut(s) 100, 118, 587, 618, 815, 834
Tru1I TTAA 2 cut(s) 572, 687
Tru9I TTAA 2 cut(s) 572, 687
TscAI CASTG 4 cut(s) 246, 264, 304, 562
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 7 cut(s) 61, 78, 89, 123, 303, 558, 798
TspRI CASTG 4 cut(s) 246, 264, 304, 562
Van91I CCANNNNNTGG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 244
VspI ATTAAT 1 cut(s) 572
XbaI TCTAGA 1 cut(s) 866
XceI RCATGY 1 cut(s) 357
XspI CTAG 3 cut(s) 717, 753, 867
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.