Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007509

Physical Location & Seq

Genomic Coordinates Forward (+)

12257693 .. 12260295

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G124400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAATGAAGACCAGTTGATTTTTCCTGAGCACCCAGGTGGCAAAATGCAGGGTGTGATTTCTTCCTCTTCAGTTTCTGTCCCAAAAAAAGCTTCCCACCATGATGATGAACTCTTCATGCAGCAGAGGGTGCTCTTTTCAGAGAATCTGAATGAACTGAAGAATATGAGGAAACAGTTGTACTCAGCAGCCGAATATTTCGAAATGTCTTACAGCAAAGAGGACCAAAAACAATTAGTGATGGAGGCCTTGAAGGATTATGTCCTCAAAGCAGTTGTCAATACTGTGGATCACTTGGGTTCAATGGCTTATAAGGTCAATGGATTTTTGGATGAAAATGTCAATCAAGTCTCAGAAACTGGGCTTAGGTTGTCTTGCATTGAACAGCGACTTAGGACGTGCCAAGATTTCGTCACTCAAGGGGGTGTCTTCCAAAATTCTTTTGCCTTAAAGTTTCCCAAGCACCATAGGAGATACATCTTGCCAGACAAGTATGTTCTCATCATGGATACTGTTGGCCAGTCTGCATTGAGACAAAGTGCTGAAGAGGATTTGTATGAGATAAGTACAGCAACAACGAGGGAGATTGCTCCAACAATTGTCAGTGAAGAGCCTTCTGCATCACACTCAGCGCAACCTTCACGTGGAGCATTTCAATTCACAAGAATTTCATCCAAACATGAGAAAAGAACGGTCTCACCGCATCGGTTTCCACTTCCCCGTTGTGGCTCTCTTGTTAAGAGATCAAGCACTATGAACTCTTCTTCTACTGTCAAACAGCGGTACGTCTCAGAGCCCCGAACCAGGAGAACAATTTCATTGCCTCTTCATGCTGAAAGAGACACGACCAAAGACAGTGATCAGCACTCAGGCAAAAATAAACGTCTGTTTAAGGCCTTGCTTAGCATGCGCAAGTCTAGAAAGGATGCCACATTGTACAAATATTTGGATGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

36.46

Weight (kDa)

9.31

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640
malus_domestica	MD14G1132900.v1.1
prunus_persica	Prupe.5G124400_v2.0.a1 Prupe.5G124400_v2.0.a1
pyrus_communis	pycom07g26600
rosa_chinensis	RchiOBHm_Chr7g0186151
rosa_laevigata	RLG00000004860
rosa_multiflora	Rmu_co8365319.1_g000001 Rmu_sc0025540.1_g000001 Rmu_sc0025541.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268380
rosa_rugosa	Rorug06G0472300 Rorug06G0472400 Rorug06G0472500
rosa_samantha	Rh7AG069100 Rh7BG085100 Rh7CG079000 Rh7DG079100
rosa_wichuraiana	Rw7G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
Acc16I	TGCGCA	1 cut(s)	911
AciI	CCGC	2 cut(s)	701, 781
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	2 cut(s)	436, 666
AcuI	CTGAAG	3 cut(s)	54, 179, 564
AcvI	CACGTG	1 cut(s)	644
AfaI	GTAC	4 cut(s)	182, 568, 785, 938
AfiI	CCNNNNNNNGG	3 cut(s)	644, 725, 804
AgsI	TTSAA	4 cut(s)	253, 303, 383, 656
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	2 cut(s)	34, 803
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw21I	GWGCWC	2 cut(s)	33, 135
Alw26I	GTCTC	5 cut(s)	355, 526, 700, 793, 834
AlwI	GGATC	1 cut(s)	297
AlwNI	CAGNNNCTG	2 cut(s)	77, 359
AoxI	GGCC	3 cut(s)	246, 517, 894
ApeKI	GCWGC	2 cut(s)	121, 188
ApoI	RAATTY	2 cut(s)	436, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
Asp700I	GAANNNNTTC	1 cut(s)	814
AspLEI	GCGC	2 cut(s)	634, 912
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	690
AsuII	TTCGAA	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	519
BanII	GRGCYC	1 cut(s)	798
BbrPI	CACGTG	1 cut(s)	644
BbsI	GAAGAC	2 cut(s)	15, 421
Bbv12I	GWGCWC	2 cut(s)	33, 135
BbvI	GCAGC	2 cut(s)	133, 200
BccI	CCATC	1 cut(s)	235
BciT130I	CCWGG	2 cut(s)	36, 805
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	1 cut(s)	859
BcoDI	GTCTC	5 cut(s)	355, 526, 700, 793, 834
BfaI	CTAG	1 cut(s)	918
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	2 cut(s)	122, 189
BlpI	GCTNAGC	1 cut(s)	902
BlsI	GCNGC	2 cut(s)	123, 190
Bme1390I	CCNGG	2 cut(s)	36, 805
Bme18I	GGWCC	1 cut(s)	223
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	36, 805
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	3 cut(s)	629, 712, 916
BmuI	ACTGGG	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	15, 421
Bpu10I	CCTNAGC	2 cut(s)	27, 365
Bpu1102I	GCTNAGC	1 cut(s)	902
Bpu14I	TTCGAA	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	402
BsaAI	YACGTR	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	700
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	644, 725, 804
Bse1I	ACTGG	3 cut(s)	13, 364, 520
Bse3DI	GCAATG	1 cut(s)	818
BseBI	CCWGG	2 cut(s)	36, 805
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	4 cut(s)	337, 671, 931, 955
BseLI	CCNNNNNNNGG	3 cut(s)	644, 725, 804
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	6 cut(s)	18, 198, 366, 642, 804, 882
BseNI	ACTGG	3 cut(s)	13, 364, 520
BseXI	GCAGC	2 cut(s)	133, 200
BshFI	GGCC	3 cut(s)	248, 519, 896
BsiHKAI	GWGCWC	2 cut(s)	33, 135
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	644, 725, 804
BsmAI	GTCTC	5 cut(s)	355, 526, 700, 793, 834
BsmBI	CGTCTC	1 cut(s)	793
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	3 cut(s)	248, 519, 896
Bso31I	GGTCTC	1 cut(s)	700
Bsp119I	TTCGAA	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	33, 135, 798
Bsp1407I	TGTACA	1 cut(s)	936
Bsp143I	GATC	3 cut(s)	289, 743, 859
Bsp1720I	GCTNAGC	1 cut(s)	902
BspACI	CCGC	2 cut(s)	701, 781
BspANI	GGCC	3 cut(s)	248, 519, 896
BspCNI	CTCAG	6 cut(s)	19, 197, 365, 641, 803, 881
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	700
BsrDI	GCAATG	1 cut(s)	818
BsrGI	TGTACA	1 cut(s)	936
BsrI	ACTGG	3 cut(s)	13, 364, 520
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	3 cut(s)	289, 743, 859
Bst2UI	CCWGG	2 cut(s)	36, 805
Bst4CI	ACNGT	6 cut(s)	177, 286, 514, 694, 772, 857
Bst6I	CTCTTC	6 cut(s)	73, 119, 540, 603, 766, 831
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstAUI	TGTACA	1 cut(s)	936
BstBAI	YACGTR	1 cut(s)	644
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	908
BstDEI	CTNAG	9 cut(s)	27, 184, 352, 365, 392, 628, 790, 868, 902
BstF5I	GGATG	4 cut(s)	337, 671, 931, 955
BstHHI	GCGC	2 cut(s)	634, 912
BstKTI	GATC	3 cut(s)	292, 746, 862
BstMAI	GTCTC	5 cut(s)	355, 526, 700, 793, 834
BstMBI	GATC	3 cut(s)	289, 743, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 907
BstNI	CCWGG	2 cut(s)	36, 805
BstNSI	RCATGY	1 cut(s)	910
BstSCI	CCNGG	2 cut(s)	34, 803
BstV1I	GCAGC	2 cut(s)	133, 200
BstV2I	GAAGAC	2 cut(s)	15, 421
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	3 cut(s)	248, 519, 896
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	4 cut(s)	337, 671, 931, 955
BtsIMutI	CAGTG	2 cut(s)	610, 862
Cac8I	GCNNGC	1 cut(s)	908
CaiI	CAGNNNCTG	2 cut(s)	77, 359
CfoI	GCGC	2 cut(s)	634, 912
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	4 cut(s)	181, 567, 784, 937
CviAII	CATG	6 cut(s)	101, 118, 505, 680, 830, 907
CviQI	GTAC	4 cut(s)	181, 567, 784, 937
DdeI	CTNAG	9 cut(s)	27, 184, 352, 365, 392, 628, 790, 868, 902
DpnI	GATC	3 cut(s)	291, 745, 861
DpnII	GATC	3 cut(s)	289, 743, 859
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	6 cut(s)	73, 119, 540, 603, 766, 831
EarI	CTCTTC	6 cut(s)	73, 119, 540, 603, 766, 831
Eco147I	AGGCCT	2 cut(s)	248, 896
Eco24I	GRGCYC	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	700
Eco47I	GGWCC	1 cut(s)	223
Eco57I	CTGAAG	3 cut(s)	54, 179, 564
Eco72I	CACGTG	1 cut(s)	644
EcoRII	CCWGG	2 cut(s)	34, 803
EcoT38I	GRGCYC	1 cut(s)	798
Esp3I	CGTCTC	1 cut(s)	793
FaeI	CATG	6 cut(s)	104, 121, 508, 683, 833, 910
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	6 cut(s)	100, 117, 504, 679, 829, 906
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	2 cut(s)	122, 189
FokI	GGATG	3 cut(s)	344, 658, 938
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	2 cut(s)	122, 189
FspBI	CTAG	1 cut(s)	918
FspI	TGCGCA	1 cut(s)	911
GlaI	GCGC	2 cut(s)	633, 911
GluI	GCNGC	2 cut(s)	122, 189
HaeIII	GGCC	3 cut(s)	248, 519, 896
HhaI	GCGC	2 cut(s)	634, 912
Hin1II	CATG	6 cut(s)	104, 121, 508, 683, 833, 910
Hin6I	GCGC	2 cut(s)	632, 910
HinP1I	GCGC	2 cut(s)	632, 910
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	1 cut(s)	145
HphI	GGTGA	1 cut(s)	690
Hpy188I	TCNGA	4 cut(s)	142, 150, 355, 793
Hpy188III	TCNNGA	2 cut(s)	26, 918
HpyAV	CCTTC	3 cut(s)	247, 624, 648
HpyCH4III	ACNGT	6 cut(s)	177, 286, 514, 694, 772, 857
HpyCH4IV	ACGT	4 cut(s)	398, 643, 786, 883
HpyCH4V	TGCA	5 cut(s)	49, 121, 378, 527, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 907
HpyF3I	CTNAG	9 cut(s)	27, 184, 352, 365, 392, 628, 790, 868, 902
HpySE526I	ACGT	4 cut(s)	398, 643, 786, 883
Hsp92II	CATG	6 cut(s)	104, 121, 508, 683, 833, 910
HspAI	GCGC	2 cut(s)	632, 910
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	3 cut(s)	289, 743, 859
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	2 cut(s)	595, 647
Lsp1109I	GCAGC	2 cut(s)	133, 200
LweI	GCATC	3 cut(s)	629, 712, 916
MaeI	CTAG	1 cut(s)	918
MaeII	ACGT	4 cut(s)	398, 643, 786, 883
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	291, 745, 861
MboI	GATC	3 cut(s)	289, 743, 859
MfeI	CAATTG	1 cut(s)	597
MhlI	GDGCHC	3 cut(s)	33, 135, 798
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	7 cut(s)	233, 436, 597, 656, 666, 813, 955
MluNI	TGGCCA	1 cut(s)	519
MmeI	TCCRAC	1 cut(s)	617
MnlI	CCTC	9 cut(s)	76, 120, 162, 214, 238, 275, 541, 573, 834
Mox20I	TGGCCA	1 cut(s)	519
MroXI	GAANNNNTTC	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	4 cut(s)	449, 738, 891, 958
MslI	CAYNNNNRTG	3 cut(s)	36, 102, 105
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	781
MspR9I	CCNGG	2 cut(s)	36, 805
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	36, 805
MwoI	GCNNNNNNNGC	2 cut(s)	130, 907
NdeII	GATC	3 cut(s)	289, 743, 859
NlaIII	CATG	6 cut(s)	104, 121, 508, 683, 833, 910
NmuCI	GTSAC	1 cut(s)	412
NsbI	TGCGCA	1 cut(s)	911
NspI	RCATGY	1 cut(s)	910
NspV	TTCGAA	1 cut(s)	201
OliI	CACNNNNGTG	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	910
PceI	AGGCCT	2 cut(s)	248, 896
PciSI	GCTCTTC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	814
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	123, 190
PmaCI	CACGTG	1 cut(s)	644
PmlI	CACGTG	1 cut(s)	644
Ppu21I	YACGTR	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	34, 803
PspCI	CACGTG	1 cut(s)	644
PspGI	CCWGG	2 cut(s)	34, 803
PspPI	GGNCC	1 cut(s)	223
PstNI	CAGNNNCTG	2 cut(s)	77, 359
RsaI	GTAC	4 cut(s)	182, 568, 785, 938
RsaNI	GTAC	4 cut(s)	181, 567, 784, 937
RseI	CAYNNNNRTG	3 cut(s)	36, 102, 105
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	4 cut(s)	449, 738, 891, 958
SatI	GCNGC	2 cut(s)	122, 189
Sau3AI	GATC	3 cut(s)	289, 743, 859
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	2 cut(s)	36, 805
SduI	GDGCHC	3 cut(s)	33, 135, 798
SetI	ASST	9 cut(s)	40, 94, 318, 371, 401, 640, 646, 789, 886
SfaNI	GCATC	3 cut(s)	629, 712, 916
SfuI	TTCGAA	1 cut(s)	201
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	3 cut(s)	36, 102, 105
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
SphI	GCATGC	1 cut(s)	910
Sse9I	AATT	7 cut(s)	233, 436, 597, 656, 666, 813, 955
SseBI	AGGCCT	2 cut(s)	248, 896
SsiI	CCGC	2 cut(s)	701, 781
SspI	AATATT	2 cut(s)	197, 944
SspMI	CTAG	1 cut(s)	918
StuI	AGGCCT	2 cut(s)	248, 896
StyD4I	CCNGG	2 cut(s)	34, 803
TaaI	ACNGT	6 cut(s)	177, 286, 514, 694, 772, 857
TaiI	ACGT	4 cut(s)	401, 646, 789, 886
TaqI	TCGA	1 cut(s)	201
TasI	AATT	7 cut(s)	233, 436, 597, 656, 666, 813, 955
TatI	WGTACW	3 cut(s)	180, 566, 936
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	4 cut(s)	449, 738, 891, 958
Tru9I	TTAA	4 cut(s)	449, 738, 891, 958
TscAI	CASTG	2 cut(s)	610, 862
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	121, 188
Tsp45I	GTSAC	1 cut(s)	412
TspRI	CASTG	2 cut(s)	610, 862
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	2 cut(s)	436, 666
XbaI	TCTAGA	1 cut(s)	917
XceI	RCATGY	1 cut(s)	910
XmnI	GAANNNNTTC	1 cut(s)	814
XspI	CTAG	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.