Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007509

Physical Location & Seq

Genomic Coordinates Forward (+)

21079136 .. 21081826

Gene Structure 2691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1132900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCAGCAGAGAGTGCTCTTTTCAGAGAACCTCAATGAACTGAAGAATCTGAGGAAACAGTTGTACTCAGCAGCTGAATATTTCGAAATATCTTACAGAAAAGAGGACCAACAACAATTAGTGGTGGAGACTTTGAAAGATTATGTGATGAAGGCAGTTATCAACACTGTGGATCACTTAGGTTCAATGGCATATAAGGTCAACGTATTTTTGGATGACAAAGTCGACGAAGTTTCAGAAACTGAGCTCAGGATGTCTTGCATTCAACAGCGACTGAGAACGTGTGAAGATTTCATCGGTCAAGGGGGCGTCTCCAAACATTCGCTAGCCATAAGCTTTCCGATGCACCATAGGCGATATACCTTGCCAGTTGGGGCAGCCATGGATGCTGTCGGCCAGTCTGCCTTGGCATATCGAAGCGCTGCCAAAGAGGATTTCTTTGAGGTTAAATCTGCAACGAGGAATACTTCTCCAATTGTCAGTGAAAAGTCTGCATTGCACTCTCCAGAATCTTCACCCGGAGCATTTCAGTTCCCAAGAATTGCATCCAAACATGAGAAAAGAACAGTCTCGCCACACCGGTTTCCACTTCCACGTTGTGGTTCTCATGTGAAGAGATCAAGCACTCTGAACTCTTCTAGCAGCAAACAGAGGTACTCGTCAGAGCCCCGGACCAGGAGATCAACGTCATTATCTCTTGATACCGAAAGAGCCAGGACAAGAGACACTGAGCAGCATTCGGGCAAAAATAAACGCTTCTATAAGGCCTTGCTTAGCTTCGGAAAGTCTAGGAAGGACACCATATTCTACAAATATTTGGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

31.6

Weight (kDa)

9.62

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640
malus_domestica	MD14G1132900.v1.1
prunus_persica	Prupe.5G124400_v2.0.a1 Prupe.5G124400_v2.0.a1
pyrus_communis	pycom07g26600
rosa_chinensis	RchiOBHm_Chr7g0186151
rosa_laevigata	RLG00000004860
rosa_multiflora	Rmu_co8365319.1_g000001 Rmu_sc0025540.1_g000001 Rmu_sc0025541.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268380
rosa_rugosa	Rorug06G0472300 Rorug06G0472400 Rorug06G0472500
rosa_samantha	Rh7AG069100 Rh7BG085100 Rh7CG079000 Rh7DG079100
rosa_wichuraiana	Rw7G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	309
AdeI	CACNNNGTG	1 cut(s)	599
AfaI	GTAC	2 cut(s)	65, 656
AfeI	AGCGCT	1 cut(s)	421
AfiI	CCNNNNNNNGG	2 cut(s)	599, 675
AflIII	ACRYGT	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	579
AgsI	TTSAA	3 cut(s)	136, 186, 266
AjnI	CCWGG	2 cut(s)	674, 713
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	4 cut(s)	74, 247, 336, 777
AluI	AGCT	4 cut(s)	74, 247, 336, 777
Alw21I	GWGCWC	2 cut(s)	18, 249
Alw26I	GTCTC	4 cut(s)	122, 316, 574, 717
AlwI	GGATC	1 cut(s)	180
AlwNI	CAGNNNCTG	3 cut(s)	74, 242, 274
Aor51HI	AGCGCT	1 cut(s)	421
AoxI	GGCC	2 cut(s)	394, 765
ApeKI	GCWGC	6 cut(s)	4, 71, 377, 422, 642, 733
AsiGI	ACCGGT	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	106, 672
AsuC2I	CCSGG	2 cut(s)	519, 670
AsuHPI	GGTGA	1 cut(s)	507
AsuII	TTCGAA	1 cut(s)	84
AsuNHI	GCTAGC	1 cut(s)	325
AvaII	GGWCC	2 cut(s)	106, 672
BanII	GRGCYC	2 cut(s)	249, 669
Bbv12I	GWGCWC	2 cut(s)	18, 249
BbvI	GCAGC	6 cut(s)	16, 83, 389, 409, 654, 745
BciT130I	CCWGG	2 cut(s)	676, 715
BcnI	CCSGG	2 cut(s)	519, 670
BcoDI	GTCTC	4 cut(s)	122, 316, 574, 717
BfaI	CTAG	3 cut(s)	326, 639, 789
BfoI	RGCGCY	1 cut(s)	423
BisI	GCNGC	6 cut(s)	5, 72, 378, 423, 643, 734
BlpI	GCTNAGC	1 cut(s)	773
BlsI	GCNGC	6 cut(s)	6, 73, 379, 424, 644, 735
Bme1390I	CCNGG	4 cut(s)	519, 670, 676, 715
Bme18I	GGWCC	2 cut(s)	106, 672
BmgT120I	GGNCC	2 cut(s)	106, 672
BmrFI	CCNGG	4 cut(s)	519, 670, 676, 715
BmsI	GCATC	3 cut(s)	333, 376, 554
BmtI	GCTAGC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu1102I	GCTNAGC	1 cut(s)	773
Bpu14I	TTCGAA	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	519, 670
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	381, 405, 668
BsaWI	WCCGGW	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	2 cut(s)	599, 675
Bse118I	RCCGGY	1 cut(s)	579
Bse1I	ACTGG	2 cut(s)	368, 397
Bse3DI	GCAATG	1 cut(s)	494
BseBI	CCWGG	2 cut(s)	676, 715
BseDI	CCNNGG	3 cut(s)	381, 405, 668
BseGI	GGATG	5 cut(s)	220, 258, 391, 545, 826
BseLI	CCNNNNNNNGG	2 cut(s)	599, 675
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	6 cut(s)	41, 81, 234, 262, 266, 720
BseNI	ACTGG	2 cut(s)	368, 397
BseXI	GCAGC	6 cut(s)	16, 83, 389, 409, 654, 745
BshFI	GGCC	2 cut(s)	396, 767
BshTI	ACCGGT	1 cut(s)	579
BsiHKAI	GWGCWC	2 cut(s)	18, 249
BsiSI	CCGG	3 cut(s)	519, 580, 670
BslI	CCNNNNNNNGG	2 cut(s)	599, 675
BsmAI	GTCTC	4 cut(s)	122, 316, 574, 717
BsmBI	CGTCTC	1 cut(s)	316
BsmI	GAATGC	2 cut(s)	261, 736
BsnI	GGCC	2 cut(s)	396, 767
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	3 cut(s)	18, 249, 669
Bsp143I	GATC	3 cut(s)	172, 617, 680
Bsp1720I	GCTNAGC	1 cut(s)	773
Bsp19I	CCATGG	1 cut(s)	381
BspANI	GGCC	2 cut(s)	396, 767
BspCNI	CTCAG	6 cut(s)	42, 80, 235, 261, 267, 721
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	368, 397
BssAI	RCCGGY	1 cut(s)	579
BssECI	CCNNGG	3 cut(s)	381, 405, 668
BssMI	GATC	3 cut(s)	172, 617, 680
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	381, 405
Bst2UI	CCWGG	2 cut(s)	676, 715
Bst4CI	ACNGT	3 cut(s)	60, 169, 568
Bst6I	CTCTTC	2 cut(s)	608, 640
BstACI	GRCGYC	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	8 cut(s)	50, 67, 178, 243, 248, 275, 729, 773
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	5 cut(s)	220, 258, 391, 545, 826
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	3 cut(s)	175, 620, 683
BstMAI	GTCTC	4 cut(s)	122, 316, 574, 717
BstMBI	GATC	3 cut(s)	172, 617, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 352, 386
BstNI	CCWGG	2 cut(s)	676, 715
BstSCI	CCNGG	4 cut(s)	517, 668, 674, 713
BstV1I	GCAGC	6 cut(s)	16, 83, 389, 409, 654, 745
BsuRI	GGCC	2 cut(s)	396, 767
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	5 cut(s)	220, 258, 391, 545, 826
BtsIMutI	CAGTG	3 cut(s)	165, 487, 726
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	3 cut(s)	74, 242, 274
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	579
Cfr13I	GGNCC	2 cut(s)	106, 672
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	64, 655
CspAI	ACCGGT	1 cut(s)	579
CviAII	CATG	3 cut(s)	382, 554, 608
CviQI	GTAC	2 cut(s)	64, 655
DdeI	CTNAG	8 cut(s)	50, 67, 178, 243, 248, 275, 729, 773
DpnI	GATC	3 cut(s)	174, 619, 682
DpnII	GATC	3 cut(s)	172, 617, 680
DraIII	CACNNNGTG	1 cut(s)	599
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	2 cut(s)	608, 640
EarI	CTCTTC	2 cut(s)	608, 640
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	2 cut(s)	381, 405
Eco147I	AGGCCT	1 cut(s)	767
Eco24I	GRGCYC	2 cut(s)	249, 669
Eco47I	GGWCC	2 cut(s)	106, 672
Eco47III	AGCGCT	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	674, 713
EcoT14I	CCWWGG	2 cut(s)	381, 405
EcoT38I	GRGCYC	2 cut(s)	249, 669
ErhI	CCWWGG	2 cut(s)	381, 405
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	3 cut(s)	385, 557, 611
FatI	CATG	3 cut(s)	381, 553, 607
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	6 cut(s)	5, 72, 378, 423, 643, 734
FokI	GGATG	4 cut(s)	227, 265, 398, 532
FriOI	GRGCYC	2 cut(s)	249, 669
Fsp4HI	GCNGC	6 cut(s)	5, 72, 378, 423, 643, 734
FspBI	CTAG	3 cut(s)	326, 639, 789
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	6 cut(s)	5, 72, 378, 423, 643, 734
GsuI	CTGGAG	1 cut(s)	489
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	396, 767
HapII	CCGG	3 cut(s)	519, 580, 670
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	1 cut(s)	422
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	385, 557, 611
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HincII	GTYRAC	2 cut(s)	202, 226
HindII	GTYRAC	2 cut(s)	202, 226
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	2 cut(s)	46, 509
HpaII	CCGG	3 cut(s)	519, 580, 670
HphI	GGTGA	1 cut(s)	507
Hpy166II	GTNNAC	2 cut(s)	202, 226
Hpy188I	TCNGA	7 cut(s)	25, 51, 238, 342, 630, 664, 782
Hpy188III	TCNNGA	3 cut(s)	250, 506, 698
Hpy8I	GTNNAC	2 cut(s)	202, 226
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	145, 787
HpyCH4III	ACNGT	3 cut(s)	60, 169, 568
HpyCH4IV	ACGT	4 cut(s)	204, 281, 595, 686
HpyCH4V	TGCA	7 cut(s)	4, 261, 346, 455, 494, 499, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 352, 386
HpyF3I	CTNAG	8 cut(s)	50, 67, 178, 243, 248, 275, 729, 773
HpySE526I	ACGT	4 cut(s)	204, 281, 595, 686
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	385, 557, 611
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	172, 617, 680
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	6 cut(s)	16, 83, 389, 409, 654, 745
LweI	GCATC	3 cut(s)	333, 376, 554
MaeI	CTAG	3 cut(s)	326, 639, 789
MaeII	ACGT	4 cut(s)	204, 281, 595, 686
MalI	GATC	3 cut(s)	174, 619, 682
MboI	GATC	3 cut(s)	172, 617, 680
MboII	GAAGA	5 cut(s)	55, 299, 504, 625, 627
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	3 cut(s)	18, 249, 669
MluCI	AATT	4 cut(s)	116, 474, 540, 826
MnlI	CCTC	7 cut(s)	41, 45, 97, 424, 436, 453, 645
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	3 cut(s)	519, 580, 670
MspR9I	CCNGG	4 cut(s)	519, 670, 676, 715
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	2 cut(s)	261, 736
MvaI	CCWGG	2 cut(s)	676, 715
MwoI	GCNNNNNNNGC	3 cut(s)	13, 352, 386
NciI	CCSGG	2 cut(s)	519, 670
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	3 cut(s)	172, 617, 680
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	385, 557, 611
NspV	TTCGAA	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	767
PctI	GAATGC	2 cut(s)	261, 736
PfeI	GAWTC	2 cut(s)	46, 509
PflFI	GACNNNGTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	599
PinAI	ACCGGT	1 cut(s)	579
PkrI	GCNGC	6 cut(s)	6, 73, 379, 424, 644, 735
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	674, 713
PspGI	CCWGG	2 cut(s)	674, 713
PspPI	GGNCC	2 cut(s)	106, 672
PstNI	CAGNNNCTG	3 cut(s)	74, 242, 274
PsyI	GACNNNGTC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	65, 656
RsaNI	GTAC	2 cut(s)	64, 655
SacI	GAGCTC	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	6 cut(s)	5, 72, 378, 423, 643, 734
Sau3AI	GATC	3 cut(s)	172, 617, 680
Sau96I	GGNCC	2 cut(s)	106, 672
ScrFI	CCNGG	4 cut(s)	519, 670, 676, 715
SduI	GDGCHC	3 cut(s)	18, 249, 669
SfaNI	GCATC	3 cut(s)	333, 376, 554
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	2 cut(s)	106, 672
Sse9I	AATT	4 cut(s)	116, 474, 540, 826
SseBI	AGGCCT	1 cut(s)	767
SspI	AATATT	2 cut(s)	80, 815
SspMI	CTAG	3 cut(s)	326, 639, 789
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	767
StyD4I	CCNGG	4 cut(s)	517, 668, 674, 713
StyI	CCWWGG	2 cut(s)	381, 405
TaaI	ACNGT	3 cut(s)	60, 169, 568
TaiI	ACGT	4 cut(s)	207, 284, 598, 689
TaqI	TCGA	3 cut(s)	84, 225, 415
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	4 cut(s)	116, 474, 540, 826
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	46, 509
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	3 cut(s)	172, 487, 733
TseI	GCWGC	6 cut(s)	4, 71, 377, 422, 642, 733
TspDTI	ATGAA	3 cut(s)	51, 164, 283
TspRI	CASTG	3 cut(s)	172, 487, 733
Tth111I	GACNNNGTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	599
VpaK11BI	GGWCC	2 cut(s)	106, 672
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	3 cut(s)	326, 639, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.