Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007509

Physical Location & Seq

Genomic Coordinates Reverse (-)

6597788 .. 6600853

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11640.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCAGAAAGTGCTGTCTTCCTCTTCGATTTCTTCTGCCCCGAAAGAAGCTTCACACAATGATGAACTCTTCATGAAGCAGAGGGTGCTCTTCTCAGAGAATCTGAATGAGCTGACGAATCTGAGGAAACAGTTGTACTCAGCAGCCGAATATTTCGAAATATCTTACAGCAAAGAGGACCAGAAACAACTTGTGGTGGAGACCTTGAAAGATTATGTCATCAAAGCTGTTATCAATACAGTTGACCACTTGGGTTCAGTGGCATATAAAGTCAATGGATTTTTGGATGACAAAGTCAGTGAGGTTTCAGAAACTGAGCTTAGACTCTCTAGCTTTGAACAGCGACTGAGGACATGCCGAGACTTCAGCAATCAAGGAGGCTTATTCCAACATTCATTTGCCATAAACTTTCCTAAGCACCATAAGCGATACATCTTGCCAGGTGGAGCAACAACTCAAACAGTGGGTCAGTCTGCATTGATATATCATCACAGAAATTTATCTGGGACTAATACTGCCACAACTAGGGAGACCTCTCCAACAGTTGTCAGTGAAGAGTATTCACTAACGCATTCTCCACAATCTTCACCTGGAGCATTTCAGTTTGCAAGAATCGGATCCATACATGAGAAACGAAGTGTCTCACCGCTTAAGTTTCCAATTTTACGGTGTGGCTCTGTTGTAAAGAGATCAAGCACTCTGAACTCTTCTTCTACTGCTAAACTGCGGTACCCATCGGAGCCTCGGACTAGGAGATCAGCTTCATTTCATAACGAAAGAGACACTGAAGTGGAATCAAGCAAAAACAAGAAATTCTATAAAGCCTTATTGAGCATGGGCAAATCTAGAAATGATAAGGCATTGTACAAATACTTGGATAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

33.38

Weight (kDa)

9.6

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640
malus_domestica	MD14G1132900.v1.1
prunus_persica	Prupe.5G124400_v2.0.a1 Prupe.5G124400_v2.0.a1
pyrus_communis	pycom07g26600
rosa_chinensis	RchiOBHm_Chr7g0186151
rosa_laevigata	RLG00000004860
rosa_multiflora	Rmu_co8365319.1_g000001 Rmu_sc0025540.1_g000001 Rmu_sc0025541.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268380
rosa_rugosa	Rorug06G0472300 Rorug06G0472400 Rorug06G0472500
rosa_samantha	Rh7AG069100 Rh7BG085100 Rh7CG079000 Rh7DG079100
rosa_wichuraiana	Rw7G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	729
AccB1I	GGYRCC	1 cut(s)	729
AciI	CCGC	2 cut(s)	647, 727
AclWI	GGATC	2 cut(s)	612, 625
AcsI	RAATTY	2 cut(s)	496, 812
AcuI	CTGAAG	2 cut(s)	349, 807
AfaI	GTAC	3 cut(s)	137, 731, 866
AfiI	CCNNNNNNNGG	1 cut(s)	525
AflII	CTTAAG	1 cut(s)	650
AgsI	TTSAA	2 cut(s)	208, 338
AjnI	CCWGG	2 cut(s)	439, 589
AleI	CACNNNNGTG	1 cut(s)	788
AluBI	AGCT	6 cut(s)	50, 112, 227, 319, 333, 761
AluI	AGCT	6 cut(s)	50, 112, 227, 319, 333, 761
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	5 cut(s)	194, 354, 524, 646, 774
AlwI	GGATC	2 cut(s)	612, 625
AlwNI	CAGNNNCTG	2 cut(s)	314, 346
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	496, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
Asp718I	GGTACC	1 cut(s)	729
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	579, 636
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	178
BaeI	ACNNNNGTAYC	2 cut(s)	713, 746
BamHI	GGATCC	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	729
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	742
BciT130I	CCWGG	2 cut(s)	441, 591
BcoDI	GTCTC	5 cut(s)	194, 354, 524, 646, 774
BfaI	CTAG	4 cut(s)	330, 525, 750, 846
BfrI	CTTAAG	1 cut(s)	650
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	441, 591
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	3 cut(s)	619, 731, 741
BmrFI	CCNGG	2 cut(s)	441, 591
BpiI	GAAGAC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	156
BsaI	GGTCTC	2 cut(s)	194, 524
BsaJI	CCNNGG	1 cut(s)	743
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	441, 591
BseDI	CCNNGG	1 cut(s)	743
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMII	CTCAG	5 cut(s)	108, 113, 153, 306, 338
BseXI	GCAGC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	729
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	5 cut(s)	194, 354, 524, 646, 774
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	571
Bso31I	GGTCTC	2 cut(s)	194, 524
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	864
Bsp143I	GATC	3 cut(s)	617, 689, 755
BspACI	CCGC	2 cut(s)	647, 727
BspCNI	CTCAG	5 cut(s)	107, 114, 152, 307, 339
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	3 cut(s)	619, 731, 741
BspPI	GGATC	2 cut(s)	612, 625
BspQI	GCTCTTC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	729
BspTI	CTTAAG	1 cut(s)	650
BspTNI	GGTCTC	2 cut(s)	194, 524
BsrGI	TGTACA	1 cut(s)	864
BssECI	CCNNGG	1 cut(s)	743
BssMI	GATC	3 cut(s)	617, 689, 755
Bst2UI	CCWGG	2 cut(s)	441, 591
Bst4CI	ACNGT	5 cut(s)	132, 241, 463, 544, 669
Bst6I	CTCTTC	5 cut(s)	28, 74, 95, 549, 712
BstAFI	CTTAAG	1 cut(s)	650
BstAPI	GCANNNNNTGC	2 cut(s)	10, 85
BstAUI	TGTACA	1 cut(s)	864
BstBI	TTCGAA	1 cut(s)	156
BstDEI	CTNAG	7 cut(s)	94, 122, 139, 315, 320, 347, 414
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	3 cut(s)	620, 692, 758
BstMAI	GTCTC	5 cut(s)	194, 354, 524, 646, 774
BstMBI	GATC	3 cut(s)	617, 689, 755
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 85, 424
BstNI	CCWGG	2 cut(s)	441, 591
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	439, 589
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	5 cut(s)	264, 304, 468, 556, 783
CaiI	CAGNNNCTG	2 cut(s)	314, 346
CciI	TCATGA	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	136, 730, 865
CviAII	CATG	4 cut(s)	73, 354, 626, 835
CviQI	GTAC	3 cut(s)	136, 730, 865
DdeI	CTNAG	7 cut(s)	94, 122, 139, 315, 320, 347, 414
DpnI	GATC	3 cut(s)	619, 691, 757
DpnII	GATC	3 cut(s)	617, 689, 755
Eam1104I	CTCTTC	5 cut(s)	28, 74, 95, 549, 712
EarI	CTCTTC	5 cut(s)	28, 74, 95, 549, 712
Eco31I	GGTCTC	2 cut(s)	194, 524
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	349, 807
EcoRII	CCWGG	2 cut(s)	439, 589
FaeI	CATG	4 cut(s)	76, 357, 629, 838
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	4 cut(s)	72, 353, 625, 834
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	4 cut(s)	330, 525, 750, 846
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	612
Hin1II	CATG	4 cut(s)	76, 357, 629, 838
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	5 cut(s)	100, 118, 324, 612, 794
HphI	GGTGA	2 cut(s)	579, 636
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	8 cut(s)	97, 105, 123, 310, 617, 702, 739, 747
Hpy188III	TCNNGA	2 cut(s)	73, 846
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	5 cut(s)	132, 241, 463, 544, 669
HpyCH4V	TGCA	3 cut(s)	4, 476, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 85, 424
HpyF3I	CTNAG	7 cut(s)	94, 122, 139, 315, 320, 347, 414
Hsp92II	CATG	4 cut(s)	76, 357, 629, 838
KpnI	GGTACC	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	617, 689, 755
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	3 cut(s)	446, 593, 739
LpnPI	CCDG	6 cut(s)	194, 426, 453, 489, 576, 603
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	4 cut(s)	330, 525, 750, 846
MalI	GATC	3 cut(s)	619, 691, 757
MboI	GATC	3 cut(s)	617, 689, 755
MboII	GAAGA	9 cut(s)	9, 15, 24, 61, 82, 566, 576, 699, 702
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	4 cut(s)	496, 660, 812, 883
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	2 cut(s)	412, 563
MnlI	CCTC	9 cut(s)	31, 75, 117, 169, 295, 342, 371, 544, 753
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	2 cut(s)	60, 788
MspCI	CTTAAG	1 cut(s)	650
MspR9I	CCNGG	2 cut(s)	441, 591
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	2 cut(s)	441, 591
MwoI	GCNNNNNNNGC	3 cut(s)	10, 85, 424
NdeII	GATC	3 cut(s)	617, 689, 755
NlaIII	CATG	4 cut(s)	76, 357, 629, 838
NlaIV	GGNNCC	3 cut(s)	619, 731, 741
NmeAIII	GCCGAG	1 cut(s)	383
NspI	RCATGY	1 cut(s)	357
NspV	TTCGAA	1 cut(s)	156
OliI	CACNNNNGTG	1 cut(s)	788
PagI	TCATGA	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	4 cut(s)	100, 118, 612, 794
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	439, 589
PspGI	CCWGG	2 cut(s)	439, 589
PspN4I	GGNNCC	3 cut(s)	619, 731, 741
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	2 cut(s)	314, 346
PsuI	RGATCY	1 cut(s)	617
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	137, 731, 866
RsaNI	GTAC	3 cut(s)	136, 730, 865
RseI	CAYNNNNRTG	2 cut(s)	60, 788
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	617, 689, 755
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	2 cut(s)	441, 591
SduI	GDGCHC	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	60, 788
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	4 cut(s)	496, 660, 812, 883
SsiI	CCGC	2 cut(s)	647, 727
SspI	AATATT	1 cut(s)	152
SspMI	CTAG	4 cut(s)	330, 525, 750, 846
StyD4I	CCNGG	2 cut(s)	439, 589
TaaI	ACNGT	5 cut(s)	132, 241, 463, 544, 669
TaqI	TCGA	2 cut(s)	26, 156
TasI	AATT	4 cut(s)	496, 660, 812, 883
TatI	WGTACW	2 cut(s)	135, 864
TfiI	GAWTC	4 cut(s)	100, 118, 612, 794
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	5 cut(s)	264, 304, 468, 556, 790
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	6 cut(s)	61, 78, 89, 384, 753, 758
TspRI	CASTG	5 cut(s)	264, 304, 468, 556, 790
Tth111I	GACNNNGTC	1 cut(s)	293
Vha464I	CTTAAG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	2 cut(s)	496, 812
XbaI	TCTAGA	1 cut(s)	845
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	4 cut(s)	330, 525, 750, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.