Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007509

Physical Location & Seq

Genomic Coordinates Reverse (-)

63157417 .. 63159440

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTTTCTTCCTCTTTGGTTTCTTCTGCCCCAAAAGAAGCTTCACACAATGATGAACTCTTCATGAAGCAGACAGTTCTCTTCTCAGAGAATCTGAATGAATTGAAGAATCTGAGGAAACAGTTGTACTCAGCAGCTGAATATTTCGAAATATCCTACAGCAAAGAAGATCAGAAACAATTTGTGGTGGAGACCTTGAAAGATTATGTCATCAAAGCAGTTATCAATACAGTGGACCACTTGGGTTCAGTGGCATACAAAGTCGATGGATTTTTGGATGAAAAAGTCAGTGAAGTTTCAGAACCTGAGCTTAGGCTCTCTTGCCTTGAACAGCGACTGAGGACATTCCGAGACTTTAGCACTCAAGGAGGCTTATTCCAACATTCCTTTGCCATAAACTTTCCTAAGCACCATAAGCGATATATCTTGCCAGGTGGAGCAACCACTCATACTGTTGGCCAGTCTGCATTGATATATCATAGTGCTCAAGGGGACTTGTCTGGGACTAATACTGCAACAACAAGGGAGACCTCTCCAACAGTTGTCAGTGAAGAGTATTCGTTGATGCATTCTCCAGAATCTTCATCTGGAGCATTTCAGTTCACAAGAATCGGATCCAAACATGAGAAACGAACAGTCTCACCACTTAGGTTTCCAATTCCACGGTGTGGCTCTGTTAAGAGATCAAGCACTCTGAACTCTTCTTCTAGTGCCAAACTGCGGTACGCATCGGAGCCTCAGAGTAGGAGATCAGCTTCGTTATCCCTTTATAATGAAAGAGACAGGACTAAAGACATTGAAGTGGATTCAAGCAAAAATAAACGATTCTATAAGGCCTTACTGAGCATGGGCAAATCTAGAAATGATACTGCATTGTACAAATATTTGGATAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

33.73

Weight (kDa)

9.27

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007509)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640 FvH4_5g11640
malus_domestica	MD14G1132900.v1.1
prunus_persica	Prupe.5G124400_v2.0.a1 Prupe.5G124400_v2.0.a1
pyrus_communis	pycom07g26600
rosa_chinensis	RchiOBHm_Chr7g0186151
rosa_laevigata	RLG00000004860
rosa_multiflora	Rmu_co8365319.1_g000001 Rmu_sc0025540.1_g000001 Rmu_sc0025541.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268380
rosa_rugosa	Rorug06G0472300 Rorug06G0472400 Rorug06G0472500
rosa_samantha	Rh7AG069100 Rh7BG085100 Rh7CG079000 Rh7DG079100
rosa_wichuraiana	Rw7G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AccB7I	CCANNNNNTGG	1 cut(s)	668
AciI	CCGC	1 cut(s)	721
AclWI	GGATC	2 cut(s)	609, 622
AcoI	YGGCCR	1 cut(s)	457
AdeI	CACNNNGTG	1 cut(s)	668
AfaI	GTAC	3 cut(s)	128, 725, 878
AfiI	CCNNNNNNNGG	2 cut(s)	668, 720
AgsI	TTSAA	5 cut(s)	106, 199, 329, 800, 810
AjnI	CCWGG	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	4 cut(s)	41, 137, 310, 755
AluI	AGCT	4 cut(s)	41, 137, 310, 755
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	5 cut(s)	185, 345, 521, 643, 774
AlwI	GGATC	2 cut(s)	609, 622
AlwNI	CAGNNNCTG	3 cut(s)	137, 305, 337
AoxI	GGCC	2 cut(s)	457, 834
ApeKI	GCWGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	633
AsuII	TTCGAA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	5 cut(s)	185, 345, 521, 643, 774
BfaI	CTAG	2 cut(s)	708, 858
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	616, 735
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	2 cut(s)	555, 737
BpmI	CTGGAG	2 cut(s)	558, 609
Bpu10I	CCTNAGC	3 cut(s)	306, 311, 405
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	348, 471
BsaI	GGTCTC	2 cut(s)	185, 521
BsaJI	CCNNGG	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 720
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	662
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	668, 720
BseMII	CTCAG	7 cut(s)	99, 104, 144, 297, 329, 752, 833
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	146
BshFI	GGCC	2 cut(s)	459, 836
BsiHKAI	GWGCWC	1 cut(s)	487
BslFI	GGGAC	2 cut(s)	506, 517
BslI	CCNNNNNNNGG	2 cut(s)	668, 720
BsmAI	GTCTC	5 cut(s)	185, 345, 521, 643, 774
BsmFI	GGGAC	2 cut(s)	506, 517
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	2 cut(s)	459, 836
Bso31I	GGTCTC	2 cut(s)	185, 521
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	4 cut(s)	169, 614, 683, 749
BspACI	CCGC	1 cut(s)	721
BspANI	GGCC	2 cut(s)	459, 836
BspCNI	CTCAG	7 cut(s)	98, 105, 143, 298, 330, 751, 834
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	616, 735
BspPI	GGATC	2 cut(s)	609, 622
BspT104I	TTCGAA	1 cut(s)	147
BspTNI	GGTCTC	2 cut(s)	185, 521
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	662
BssMI	GATC	4 cut(s)	169, 614, 683, 749
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	7 cut(s)	76, 123, 232, 454, 541, 637, 666
Bst6I	CTCTTC	4 cut(s)	65, 86, 546, 706
BstAUI	TGTACA	1 cut(s)	876
BstBI	TTCGAA	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	662
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	4 cut(s)	172, 617, 686, 752
BstMAI	GTCTC	5 cut(s)	185, 345, 521, 643, 774
BstMBI	GATC	4 cut(s)	169, 614, 683, 749
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	2 cut(s)	459, 836
BtgI	CCRYGG	1 cut(s)	662
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	4 cut(s)	237, 255, 295, 553
CaiI	CAGNNNCTG	3 cut(s)	137, 305, 337
CciI	TCATGA	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	3 cut(s)	127, 724, 877
CviAII	CATG	3 cut(s)	64, 623, 847
CviQI	GTAC	3 cut(s)	127, 724, 877
DpnI	GATC	4 cut(s)	171, 616, 685, 751
DpnII	GATC	4 cut(s)	169, 614, 683, 749
DraIII	CACNNNGTG	1 cut(s)	668
EaeI	YGGCCR	1 cut(s)	457
Eam1104I	CTCTTC	4 cut(s)	65, 86, 546, 706
EarI	CTCTTC	4 cut(s)	65, 86, 546, 706
Eco147I	AGGCCT	1 cut(s)	836
Eco31I	GGTCTC	2 cut(s)	185, 521
Eco47I	GGWCC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	570
FaeI	CATG	3 cut(s)	67, 626, 850
FaqI	GGGAC	2 cut(s)	506, 517
FatI	CATG	3 cut(s)	63, 622, 846
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	708, 858
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	558, 609
HaeIII	GGCC	2 cut(s)	459, 836
Hin1II	CATG	3 cut(s)	67, 626, 850
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	6 cut(s)	91, 109, 578, 609, 806, 825
HphI	GGTGA	1 cut(s)	633
Hpy166II	GTNNAC	2 cut(s)	235, 603
Hpy188III	TCNNGA	4 cut(s)	64, 575, 588, 858
Hpy8I	GTNNAC	2 cut(s)	235, 603
HpyCH4III	ACNGT	7 cut(s)	76, 123, 232, 454, 541, 637, 666
HpyCH4V	TGCA	4 cut(s)	467, 515, 568, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
Hsp92II	CATG	3 cut(s)	67, 626, 850
Kzo9I	GATC	4 cut(s)	169, 614, 683, 749
LmnI	GCTCC	3 cut(s)	437, 590, 733
LpnPI	CCDG	8 cut(s)	318, 417, 444, 473, 486, 573, 588, 769
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	2 cut(s)	555, 737
MaeI	CTAG	2 cut(s)	708, 858
MalI	GATC	4 cut(s)	171, 616, 685, 751
MboI	GATC	4 cut(s)	169, 614, 683, 749
MboII	GAAGA	9 cut(s)	15, 52, 73, 118, 179, 563, 573, 693, 696
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	1 cut(s)	487
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	4 cut(s)	101, 179, 657, 895
MluNI	TGGCCA	1 cut(s)	459
MmeI	TCCRAC	2 cut(s)	403, 560
MnlI	CCTC	6 cut(s)	22, 108, 333, 362, 541, 747
Mox20I	TGGCCA	1 cut(s)	459
Mph1103I	ATGCAT	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	459
MseI	TTAA	2 cut(s)	678, 898
MslI	CAYNNNNRTG	2 cut(s)	51, 800
Msp20I	TGGCCA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	415
NdeII	GATC	4 cut(s)	169, 614, 683, 749
NlaIII	CATG	3 cut(s)	67, 626, 850
NlaIV	GGNNCC	2 cut(s)	616, 735
NsiI	ATGCAT	1 cut(s)	570
NspV	TTCGAA	1 cut(s)	147
PagI	TCATGA	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	836
PctI	GAATGC	1 cut(s)	568
PfeI	GAWTC	6 cut(s)	91, 109, 578, 609, 806, 825
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	136
PsiI	TTATAA	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	616, 735
PspPI	GGNCC	1 cut(s)	235
PstNI	CAGNNNCTG	3 cut(s)	137, 305, 337
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	3 cut(s)	128, 725, 878
RsaNI	GTAC	3 cut(s)	127, 724, 877
RseI	CAYNNNNRTG	2 cut(s)	51, 800
SaqAI	TTAA	2 cut(s)	678, 898
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	4 cut(s)	169, 614, 683, 749
Sau96I	GGNCC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	9 cut(s)	43, 139, 197, 307, 312, 436, 533, 653, 757
SfaNI	GCATC	2 cut(s)	555, 737
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	51, 800
SmlI	CTYRAG	2 cut(s)	363, 486
SmoI	CTYRAG	2 cut(s)	363, 486
Sse9I	AATT	4 cut(s)	101, 179, 657, 895
SseBI	AGGCCT	1 cut(s)	836
SsiI	CCGC	1 cut(s)	721
SspI	AATATT	2 cut(s)	143, 884
SspMI	CTAG	2 cut(s)	708, 858
StuI	AGGCCT	1 cut(s)	836
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	7 cut(s)	76, 123, 232, 454, 541, 637, 666
TaqI	TCGA	2 cut(s)	147, 264
TasI	AATT	4 cut(s)	101, 179, 657, 895
TatI	WGTACW	2 cut(s)	126, 876
TfiI	GAWTC	6 cut(s)	91, 109, 578, 609, 806, 825
Tru1I	TTAA	2 cut(s)	678, 898
Tru9I	TTAA	2 cut(s)	678, 898
TscAI	CASTG	4 cut(s)	237, 255, 295, 553
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	7 cut(s)	52, 69, 80, 114, 294, 573, 789
TspRI	CASTG	4 cut(s)	237, 255, 295, 553
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	857
XspI	CTAG	2 cut(s)	708, 858
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.