Rmu_sc0025541.1_g000001

ABIL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025541.1
OG0007509
Physical Location & Seq
Forward (+)
283 .. 1018
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025541.1_g000001.1.cds

Sequence Viewer

Length: 414 bp
atgatcaatttatgtgaatatcttgaagcaacaacaagggagacctctccaacagttgtcagtgaagagtattcattaatgcattctccagaatcttcacctggagcatttcagttcacaagaatcggatccaaacatgagaaacgaacagtctcaccacttaggtttccaattccacggtgtggctctgttaagagatcaagcactctgaactcttcttctagtgccaaactgcggtacccatcggagcctcggactaggagatcagcttcgttatccctttatagtgaaggagacaggactaaagacattgaagtggattcaagcaaaaataaacgattctataaggccttactgagcatgggcaaatctagaaacgatactgcattgtacaaatatttggataagaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.52

Weight (kDa)

9.73

Isoelectric Point (pI)

73.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 182
AciI CCGC 1 cut(s) 235
AclWI GGATC 2 cut(s) 123, 136
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 2 cut(s) 239, 392
AfiI CCNNNNNNNGG 2 cut(s) 182, 234
AgsI TTSAA 3 cut(s) 26, 314, 324
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 3 cut(s) 35, 157, 288
AlwI GGATC 2 cut(s) 123, 136
AoxI GGCC 1 cut(s) 348
AseI ATTAAT 1 cut(s) 77
Asp718I GGTACC 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 90, 147
BaeI ACNNNNGTAYC 2 cut(s) 221, 254
BamHI GGATCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 237
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 102
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 35, 157, 288
BfaI CTAG 3 cut(s) 222, 258, 372
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 3 cut(s) 130, 239, 249
BmrFI CCNGG 1 cut(s) 102
BpmI CTGGAG 2 cut(s) 72, 123
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 176, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 234
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 176, 251
BseLI CCNNNNNNNGG 2 cut(s) 182, 234
BseMII CTCAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 182, 234
BsmAI GTCTC 3 cut(s) 35, 157, 288
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 4 cut(s) 3, 128, 197, 263
BspACI CCGC 1 cut(s) 235
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 130, 239, 249
BspPI GGATC 2 cut(s) 123, 136
BspT107I GGYRCC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 176, 251
BssMI GATC 4 cut(s) 3, 128, 197, 263
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 3 cut(s) 55, 151, 180
Bst6I CTCTTC 2 cut(s) 60, 220
BstAUI TGTACA 1 cut(s) 390
BstDEI CTNAG 2 cut(s) 161, 356
BstDSI CCRYGG 1 cut(s) 176
BstKTI GATC 4 cut(s) 6, 131, 200, 266
BstMAI GTCTC 3 cut(s) 35, 157, 288
BstMBI GATC 4 cut(s) 3, 128, 197, 263
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 67
Csp6I GTAC 2 cut(s) 238, 391
CviAII CATG 2 cut(s) 137, 361
CviJI RGCY 4 cut(s) 186, 250, 269, 350
CviKI_1 RGCY 4 cut(s) 186, 250, 269, 350
CviQI GTAC 2 cut(s) 238, 391
DdeI CTNAG 2 cut(s) 161, 356
DpnI GATC 4 cut(s) 5, 130, 199, 265
DpnII GATC 4 cut(s) 3, 128, 197, 263
DraIII CACNNNGTG 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 60, 220
EarI CTCTTC 2 cut(s) 60, 220
Eco147I AGGCCT 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 84
FaeI CATG 2 cut(s) 140, 364
FaiI YATR 5 cut(s) 13, 138, 285, 345, 362
FatI CATG 2 cut(s) 136, 360
FbaI TGATCA 1 cut(s) 3
FspBI CTAG 3 cut(s) 222, 258, 372
GsuI CTGGAG 2 cut(s) 72, 123
HaeIII GGCC 1 cut(s) 350
Hin1II CATG 2 cut(s) 140, 364
HinfI GANTC 4 cut(s) 92, 123, 320, 339
HphI GGTGA 2 cut(s) 90, 147
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 4 cut(s) 128, 210, 247, 255
Hpy188III TCNNGA 3 cut(s) 23, 89, 372
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 3 cut(s) 55, 151, 180
HpyCH4V TGCA 2 cut(s) 82, 386
HpyF3I CTNAG 2 cut(s) 161, 356
Hsp92II CATG 2 cut(s) 140, 364
KpnI GGTACC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 128, 197, 263
LmnI GCTCC 2 cut(s) 104, 247
LpnPI CCDG 4 cut(s) 87, 102, 114, 283
MaeI CTAG 3 cut(s) 222, 258, 372
MalI GATC 4 cut(s) 5, 130, 199, 265
MboI GATC 4 cut(s) 3, 128, 197, 263
MboII GAAGA 4 cut(s) 77, 87, 207, 210
MflI RGATCY 1 cut(s) 128
MluCI AATT 2 cut(s) 7, 171
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 2 cut(s) 55, 261
Mph1103I ATGCAT 1 cut(s) 84
MseI TTAA 2 cut(s) 77, 192
MslI CAYNNNNRTG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 82
MvaI CCWGG 1 cut(s) 102
NdeII GATC 4 cut(s) 3, 128, 197, 263
NlaIII CATG 2 cut(s) 140, 364
NlaIV GGNNCC 3 cut(s) 130, 239, 249
NsiI ATGCAT 1 cut(s) 84
PceI AGGCCT 1 cut(s) 350
PctI GAATGC 1 cut(s) 82
PfeI GAWTC 4 cut(s) 92, 123, 320, 339
PflMI CCANNNNNTGG 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 3 cut(s) 130, 239, 249
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 2 cut(s) 239, 392
RsaNI GTAC 2 cut(s) 238, 391
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 2 cut(s) 77, 192
Sau3AI GATC 4 cut(s) 3, 128, 197, 263
ScrFI CCNGG 1 cut(s) 102
SetI ASST 4 cut(s) 47, 103, 167, 271
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 2 cut(s) 7, 171
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 1 cut(s) 235
SspI AATATT 1 cut(s) 398
SspMI CTAG 3 cut(s) 222, 258, 372
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 3 cut(s) 55, 151, 180
TasI AATT 2 cut(s) 7, 171
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 4 cut(s) 92, 123, 320, 339
Tru1I TTAA 2 cut(s) 77, 192
Tru9I TTAA 2 cut(s) 77, 192
TscAI CASTG 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 182
VspI ATTAAT 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 371
XspI CTAG 3 cut(s) 222, 258, 372
Zsp2I ATGCAT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.