pycom06g14500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016109
Physical Location & Seq
Reverse (-)
19219748 .. 19220077
330 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14500.1

Sequence Viewer

Length: 330 bp
ATGGCATCGATCTCACAACTTGCTTACCAAAGACTGAGAAACGAAGGTCTGTTCGATGAAAAAACAGATCAGCAAAACACAGCAATTAAATTCAAGAACATAGGGGGTTGGTCCAAGATCAGGAAGCTAACCGGGCGAAGGCGGCCAAGGGTTCGGATTCAGGGCTTGAGAAGGTTCCTGAGGGAAAGAGCTAGGATTTTCACTAGGATTAAAGTTTCATGGAGCAAAGCTTTGAAGAGACTGAAGCATGGGCAGGCTCACATGAATGACTTGCTTGGTGGGAACTATTTGTTCATGCAGGCAAACCCTCTCTATACTCTTCTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.83

Weight (kDa)

11.73

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14410 AT5G14410
fragaria_vesca FvH4_6g51980
prunus_persica Prupe.3G295100_v2.0.a1 Prupe.5G162900_v2.0.a1
pyrus_communis pycom06g14500 pycom14g14000 pycom17g01840
rosa_chinensis RchiOBHm_Chr2g0173451
rosa_laevigata RLG00000022191
rosa_multiflora Rmu_sc0015463.1_g000006 Rmu_sc0019120.1_g000002
rosa_roxburghii Rroxscaffold_2G00078840
rosa_rugosa Rorug02G0570600
rosa_wichuraiana Rw2G053280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 120, 138
AgsI TTSAA 2 cut(s) 94, 235
AluBI AGCT 3 cut(s) 127, 191, 230
AluI AGCT 3 cut(s) 127, 191, 230
Alw26I GTCTC 1 cut(s) 232
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 111
AxyI CCTNAGG 1 cut(s) 179
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 2 cut(s) 192, 204
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 138
Bse21I CCTNAGG 1 cut(s) 179
BseCI ATCGAT 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 120, 138
BseMII CTCAG 2 cut(s) 26, 170
BshFI GGCC 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 8
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 120, 138
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 3 cut(s) 9, 67, 117
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 27, 171
BspDI ATCGAT 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 3 cut(s) 9, 67, 117
BssT1I CCWWGG 1 cut(s) 146
Bst6I CTCTTC 2 cut(s) 230, 324
BstC8I GCNNGC 2 cut(s) 255, 300
BstDEI CTNAG 2 cut(s) 35, 179
BstKTI GATC 3 cut(s) 12, 70, 120
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 3 cut(s) 9, 67, 117
BstMWI GCNNNNNNNGC 2 cut(s) 133, 142
BstSCI CCNGG 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 8
Bsu36I CCTNAGG 1 cut(s) 179
BsuRI GGCC 1 cut(s) 145
BsuTUI ATCGAT 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 255, 300
Cfr13I GGNCC 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 8
CviAII CATG 4 cut(s) 219, 248, 262, 295
CviJI RGCY 6 cut(s) 127, 145, 165, 191, 230, 257
CviKI_1 RGCY 6 cut(s) 127, 145, 165, 191, 230, 257
DdeI CTNAG 2 cut(s) 35, 179
DpnI GATC 3 cut(s) 11, 69, 119
DpnII GATC 3 cut(s) 9, 67, 117
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 230, 324
EarI CTCTTC 2 cut(s) 230, 324
Eco130I CCWWGG 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 4 cut(s) 222, 251, 265, 298
FaiI YATR 6 cut(s) 101, 220, 249, 263, 296, 315
FatI CATG 4 cut(s) 218, 247, 261, 294
Fnu4HI GCNGC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 2 cut(s) 192, 204
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 145
HapII CCGG 1 cut(s) 132
Hin1II CATG 4 cut(s) 222, 251, 265, 298
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 94, 121, 178
HpyAV CCTTC 3 cut(s) 38, 132, 165
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 142
HpyF3I CTNAG 2 cut(s) 35, 179
Hsp92II CATG 4 cut(s) 222, 251, 265, 298
Kzo9I GATC 3 cut(s) 9, 67, 117
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 6 cut(s) 106, 145, 146, 191, 239, 284
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 192, 204
MalI GATC 3 cut(s) 11, 69, 119
MboI GATC 3 cut(s) 9, 67, 117
MboII GAAGA 2 cut(s) 247, 311
MluCI AATT 2 cut(s) 84, 89
MnlI CCTC 2 cut(s) 174, 318
MseI TTAA 2 cut(s) 87, 210
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 133, 142
NciI CCSGG 1 cut(s) 133
NdeII GATC 3 cut(s) 9, 67, 117
NlaIII CATG 4 cut(s) 222, 251, 265, 298
NlaIV GGNNCC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 2 cut(s) 87, 210
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 3 cut(s) 9, 67, 117
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 133
SetI ASST 5 cut(s) 49, 129, 176, 193, 232
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 84, 89
SsiI CCGC 1 cut(s) 142
SspMI CTAG 2 cut(s) 192, 204
StyD4I CCNGG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 146
TaqI TCGA 2 cut(s) 8, 54
TasI AATT 2 cut(s) 84, 89
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 87, 210
Tru9I TTAA 2 cut(s) 87, 210
TspDTI ATGAA 4 cut(s) 72, 207, 278, 283
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 1 cut(s) 89
XspI CTAG 2 cut(s) 192, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.