pycom17g01840

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
1172317 .. 1172760
444 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01840.1

Sequence Viewer

Length: 444 bp
ATGATCTCATCTTCTTCTTCCACCAAGCTCCCTGCTTACCAAAGACTCAGACATGACGACGATCTCGACGACGAGGAGTTCGATTTCGAAAAGAACCGAGTGGTGGTGAGATCAAGGACAAACAATACTACTACTAGTTGGTGCAGGTTCAGATCGTTCAGAAGGGCTCACATTCGGAGGAAATCGTTCAAGCTCAAAGTTCCGAGCCTGAGGAGGTTGTTGTTCTTGAGGAGGAAGGTGAAGGTGGTTTCTGCTCTGTGTGCAAAGGTGGTGAGGAGATTTAAAGAAGGGCAGTCACACTTTGGTGATCTTTTTGCTGGAAACTATTTGTTCTTGCAGATCAACCCTTCCTCGTTGAAGACCCTTCACAACAAGGGCACTCCTACTCATCACTCCCTTCAATTCAACAAACCCCATGCCCTCACAACCAACAACATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

17.19

Weight (kDa)

11.12

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016109)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 4 cut(s) 190, 358, 401, 406
AhlI ACTAGT 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 303
AluBI AGCT 2 cut(s) 28, 193
AluI AGCT 2 cut(s) 28, 193
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
Asp700I GAANNNNTTC 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 118, 250, 283, 317
AsuII TTCGAA 1 cut(s) 87
AxyI CCTNAGG 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 365
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 61, 200
BseRI GAGGAG 4 cut(s) 89, 226, 244, 289
BseSI GKGCMC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 103
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 2 cut(s) 169, 380
Bsp143I GATC 6 cut(s) 3, 61, 110, 152, 307, 339
BspCNI CTCAG 2 cut(s) 60, 201
BspMI ACCTGC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 435
BssMI GATC 6 cut(s) 3, 61, 110, 152, 307, 339
BstBI TTCGAA 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 47, 209
BstKTI GATC 6 cut(s) 6, 64, 113, 155, 310, 342
BstMBI GATC 6 cut(s) 3, 61, 110, 152, 307, 339
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 380
BstV2I GAAGAC 1 cut(s) 365
Bsu36I CCTNAGG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 135
CviAII CATG 2 cut(s) 53, 416
CviJI RGCY 4 cut(s) 28, 167, 193, 207
CviKI_1 RGCY 4 cut(s) 28, 167, 193, 207
DdeI CTNAG 2 cut(s) 47, 209
DpnI GATC 6 cut(s) 5, 63, 112, 154, 309, 341
DpnII GATC 6 cut(s) 3, 61, 110, 152, 307, 339
DraI TTTAAA 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 169
Eco81I CCTNAGG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 169
FaeI CATG 2 cut(s) 56, 419
FaiI YATR 2 cut(s) 54, 417
FatI CATG 2 cut(s) 52, 415
FriOI GRGCYC 1 cut(s) 169
FspBI CTAG 1 cut(s) 135
Hin1II CATG 2 cut(s) 56, 419
HinfI GANTC 1 cut(s) 45
HphI GGTGA 4 cut(s) 118, 250, 283, 317
Hpy188I TCNGA 5 cut(s) 50, 152, 161, 177, 204
Hpy188III TCNNGA 2 cut(s) 65, 226
Hpy99I CGWCG 3 cut(s) 62, 71, 74
HpyAV CCTTC 7 cut(s) 156, 229, 235, 281, 357, 374, 407
HpyCH4V TGCA 3 cut(s) 144, 263, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 47, 209
Hsp92II CATG 2 cut(s) 56, 419
Kzo9I GATC 6 cut(s) 3, 61, 110, 152, 307, 339
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 45, 130, 221, 303
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 294
MalI GATC 6 cut(s) 5, 63, 112, 154, 309, 341
MboI GATC 6 cut(s) 3, 61, 110, 152, 307, 339
MboII GAAGA 4 cut(s) 3, 6, 9, 370
MhlI GDGCHC 2 cut(s) 169, 380
MluCI AATT 1 cut(s) 401
MlyI GAGTC 1 cut(s) 39
MnlI CCTC 9 cut(s) 67, 171, 204, 207, 222, 225, 267, 361, 431
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 2 cut(s) 282, 442
MslI CAYNNNNRTG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 6 cut(s) 3, 61, 110, 152, 307, 339
NlaIII CATG 2 cut(s) 56, 419
NmuCI GTSAC 1 cut(s) 294
NspV TTCGAA 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 303
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 66, 78
PdmI GAANNNNTTC 1 cut(s) 185
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 2 cut(s) 282, 442
Sau3AI GATC 6 cut(s) 3, 61, 110, 152, 307, 339
SchI GAGTC 1 cut(s) 39
SduI GDGCHC 2 cut(s) 169, 380
SetI ASST 7 cut(s) 30, 149, 195, 218, 240, 246, 270
SfuI TTCGAA 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 1 cut(s) 401
SspMI CTAG 1 cut(s) 135
TaqI TCGA 3 cut(s) 66, 81, 87
TasI AATT 1 cut(s) 401
Tru1I TTAA 2 cut(s) 282, 442
Tru9I TTAA 2 cut(s) 282, 442
TseFI GTSAC 1 cut(s) 294
Tsp45I GTSAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.