RLG00000022191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016109
Physical Location & Seq
Forward (+)
81622369 .. 81622899
531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022191

Sequence Viewer

Length: 531 bp
ATGATGACCTCCGGCGCCGTCAAGCTCCCCAGATACCAGAGGCTGAGGCAGCACGACGACGACGAAGGTAATGGAGTTCCGGACGACGGTTACTACGATTTCGAGAAGGAGAGGGTGGTGGTCACGAAGGCGAAGAGTAGCAGCAGCATTATCAGTTGGTACAAGCTCAAGTCGAGGCTGGTTCCGAGTGTTAGCCTCAGGAGGAGGTTCAGGCTGAGAAGGAGAGTCGTGAGCTTGAGGAGGTTGTTGCGGCTGAGGAAGAAGATCAAGTTGGCTTGTAGTCATCTCAGAGTTTCGTGCCAGAAAGTAGTGAAGAGATTAAAGGATGGGCAGTCTCAGTTTGGCGATCTGTTTGCCGGGAACTATATGTTCTTGCAGATCAATCCTTCGTCATTGAAGTGCCTTGATCACCGCCGGAGCAATCTCGCCGGAGTAGGTGGGGAACAGAAGCAACACCACCACCACCACCTTCAGTTTCAGAACTTCCCTTCGAGGACAACAGGAATGGGGTATACCTTTCCAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.54

Weight (kDa)

10.86

Isoelectric Point (pI)

64.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14410 AT5G14410
fragaria_vesca FvH4_6g51980
prunus_persica Prupe.3G295100_v2.0.a1 Prupe.5G162900_v2.0.a1
pyrus_communis pycom06g14500 pycom14g14000 pycom17g01840
rosa_chinensis RchiOBHm_Chr2g0173451
rosa_laevigata RLG00000022191
rosa_multiflora Rmu_sc0015463.1_g000006 Rmu_sc0019120.1_g000002
rosa_roxburghii Rroxscaffold_2G00078840
rosa_rugosa Rorug02G0570600
rosa_wichuraiana Rw2G053280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 512
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 2 cut(s) 250, 412
AcuI CTGAAG 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 397
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 25, 166, 234
AluI AGCT 3 cut(s) 25, 166, 234
Alw26I GTCTC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 49, 141, 144
AspLEI GCGC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 401
AxyI CCTNAGG 1 cut(s) 197
BanI GGYRCC 1 cut(s) 14
BbvCI CCTCAGC 2 cut(s) 44, 254
BbvI GCAGC 3 cut(s) 61, 153, 156
BccI CCATC 1 cut(s) 320
BceAI ACGGC 1 cut(s) 2
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 4 cut(s) 50, 142, 145, 251
BlsI GCNGC 4 cut(s) 51, 143, 146, 252
Bme1390I CCNGG 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 16, 183
BmrFI CCNGG 1 cut(s) 358
Bpu10I CCTNAGC 2 cut(s) 44, 254
BpuEI CTTGAG 2 cut(s) 152, 256
BpuMI CCSGG 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse21I CCTNAGG 1 cut(s) 197
BseAI TCCGGA 1 cut(s) 79
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 6 cut(s) 35, 206, 211, 245, 301, 350
BseRI GAGGAG 2 cut(s) 217, 253
BseXI GCAGC 3 cut(s) 61, 153, 156
BshNI GGYRCC 1 cut(s) 14
BsiSI CCGG 5 cut(s) 12, 80, 357, 415, 429
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 339
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 4 cut(s) 264, 346, 378, 406
BspACI CCGC 2 cut(s) 250, 412
BspCNI CTCAG 6 cut(s) 36, 207, 210, 246, 300, 349
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 16, 183
BspT107I GGYRCC 1 cut(s) 14
BssMI GATC 4 cut(s) 264, 346, 378, 406
BssNAI GTATAC 1 cut(s) 513
BssNI GRCGYC 1 cut(s) 15
Bst1107I GTATAC 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 128, 308
BstACI GRCGYC 1 cut(s) 15
BstDEI CTNAG 6 cut(s) 44, 197, 215, 254, 287, 336
BstF5I GGATG 1 cut(s) 331
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 4 cut(s) 267, 349, 381, 409
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 4 cut(s) 264, 346, 378, 406
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 356
BstV1I GCAGC 3 cut(s) 61, 153, 156
BstZ17I GTATAC 1 cut(s) 513
Bsu36I CCTNAGG 1 cut(s) 197
BtsCI GGATG 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 160
CviJI RGCY 9 cut(s) 25, 43, 166, 178, 195, 214, 234, 253, 275
CviKI_1 RGCY 9 cut(s) 25, 43, 166, 178, 195, 214, 234, 253, 275
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 6 cut(s) 44, 197, 215, 254, 287, 336
DinI GGCGCC 1 cut(s) 16
DpnI GATC 4 cut(s) 266, 348, 380, 408
DpnII GATC 4 cut(s) 264, 346, 378, 406
Eam1104I CTCTTC 2 cut(s) 128, 308
EarI CTCTTC 2 cut(s) 128, 308
Eco57I CTGAAG 1 cut(s) 455
Eco81I CCTNAGG 1 cut(s) 197
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
FaiI YATR 3 cut(s) 366, 368, 513
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 4 cut(s) 50, 142, 145, 251
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 4 cut(s) 50, 142, 145, 251
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 50, 142, 145, 251
HaeII RGCGCY 1 cut(s) 18
HapII CCGG 5 cut(s) 12, 80, 357, 415, 429
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 1 cut(s) 225
HpaII CCGG 5 cut(s) 12, 80, 357, 415, 429
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 3 cut(s) 186, 290, 480
Hpy188III TCNNGA 5 cut(s) 80, 103, 124, 199, 229
Hpy8I GTNNAC 1 cut(s) 513
Hpy99I CGWCG 4 cut(s) 59, 62, 65, 89
HpyAV CCTTC 7 cut(s) 59, 100, 121, 213, 396, 479, 498
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 6 cut(s) 44, 197, 215, 254, 287, 336
Hsp92I GRCGYC 1 cut(s) 15
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
Kpn2I TCCGGA 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 4 cut(s) 264, 346, 378, 406
LmnI GCTCC 2 cut(s) 30, 417
Lsp1109I GCAGC 3 cut(s) 61, 153, 156
MaeIII GTNAC 2 cut(s) 89, 121
MalI GATC 4 cut(s) 266, 348, 380, 408
MboI GATC 4 cut(s) 264, 346, 378, 406
MboII GAAGA 4 cut(s) 145, 271, 274, 325
Mly113I GGCGCC 1 cut(s) 15
MlyI GAGTC 1 cut(s) 234
MroI TCCGGA 1 cut(s) 79
MseI TTAA 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 397
MspI CCGG 5 cut(s) 12, 80, 357, 415, 429
MspR9I CCNGG 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 49
NarI GGCGCC 1 cut(s) 15
NciI CCSGG 1 cut(s) 358
NdeII GATC 4 cut(s) 264, 346, 378, 406
NlaIV GGNNCC 2 cut(s) 16, 183
NmuCI GTSAC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 93
PkrI GCNGC 4 cut(s) 51, 143, 146, 252
PleI GAGTC 1 cut(s) 233
PluTI GGCGCC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 16, 183
PstNI CAGNNNCTG 1 cut(s) 43
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 397
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 4 cut(s) 50, 142, 145, 251
Sau3AI GATC 4 cut(s) 264, 346, 378, 406
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 358
SfoI GGCGCC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 397
SmlI CTYRAG 2 cut(s) 167, 235
SmoI CTYRAG 2 cut(s) 167, 235
SsiI CCGC 2 cut(s) 250, 412
SspDI GGCGCC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 3 cut(s) 102, 173, 491
TauI GCSGC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 3 cut(s) 49, 141, 144
Tsp45I GTSAC 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.