pycom14g14000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0016109
Physical Location & Seq
Reverse (-)
16801899 .. 16802246
348 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g14000.1

Sequence Viewer

Length: 348 bp
ATGAAGAAACAGATCGAGCAAAACACAGCAATTAAATTCAAGAAGATAAGGGGTTGGTCCAAGATCAGGAAGCTAACCGGTCGAAGGCGGCCGAGGGTTCGGATTCAGGGATTGAGAAGGTTCCTGAGGAGAAAAGCTAGGATTTTCAGTAGGATTAAAGTTTCGTGGAGCAAAGCTTTGAAGAGACTGAAGCATGGGCAGGCTCACATGAATGACTTGTTTGGTGGGAACTATTTGTTCATGCAGGCAAACCCTCTTCCTTTCAAATGTGGTGAGAGACCTTATAATATGGGTCATCGGTGTCATGGTAATTTCCCCTCAAGGTATCCTCTTGAAAAATTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.78

Weight (kDa)

11.87

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14410 AT5G14410
fragaria_vesca FvH4_6g51980
prunus_persica Prupe.3G295100_v2.0.a1 Prupe.5G162900_v2.0.a1
pyrus_communis pycom06g14500 pycom14g14000 pycom17g01840
rosa_chinensis RchiOBHm_Chr2g0173451
rosa_laevigata RLG00000022191
rosa_multiflora Rmu_sc0015463.1_g000006 Rmu_sc0019120.1_g000002
rosa_roxburghii Rroxscaffold_2G00078840
rosa_rugosa Rorug02G0570600
rosa_wichuraiana Rw2G053280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AciI CCGC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 89
AcsI RAATTY 2 cut(s) 35, 338
AcuI CTGAAG 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 66, 84
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 4 cut(s) 40, 181, 265, 335
AluBI AGCT 3 cut(s) 73, 137, 176
AluI AGCT 3 cut(s) 73, 137, 176
Alw26I GTCTC 2 cut(s) 178, 271
AoxI GGCC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 35, 338
AsiGI ACCGGT 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 57
AxyI CCTNAGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 178, 271
BfaI CTAG 1 cut(s) 138
BfuI GTATCC 1 cut(s) 336
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 304
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 84
Bse118I RCCGGY 1 cut(s) 77
Bse21I CCTNAGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 66, 84
BseMII CTCAG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 142
BseX3I CGGCCG 1 cut(s) 89
Bsh1285I CGRYCG 2 cut(s) 82, 92
BshFI GGCC 1 cut(s) 91
BshTI ACCGGT 1 cut(s) 77
BsiEI CGRYCG 2 cut(s) 82, 92
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 66, 84
BsmAI GTCTC 2 cut(s) 178, 271
BsnI GGCC 1 cut(s) 91
Bso31I GGTCTC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 12, 63
BspACI CCGC 1 cut(s) 88
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 12, 63
Bst6I CTCTTC 2 cut(s) 176, 261
BstC8I GCNNGC 2 cut(s) 201, 246
BstDEI CTNAG 1 cut(s) 125
BstKTI GATC 2 cut(s) 15, 66
BstMAI GTCTC 2 cut(s) 178, 271
BstMBI GATC 2 cut(s) 12, 63
BstMCI CGRYCG 2 cut(s) 82, 92
BstZI CGGCCG 1 cut(s) 89
Bsu36I CCTNAGG 1 cut(s) 125
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 201, 246
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 57
CspAI ACCGGT 1 cut(s) 77
CviAII CATG 4 cut(s) 194, 208, 241, 305
CviJI RGCY 5 cut(s) 73, 91, 137, 176, 203
CviKI_1 RGCY 5 cut(s) 73, 91, 137, 176, 203
DdeI CTNAG 1 cut(s) 125
DpnI GATC 2 cut(s) 14, 65
DpnII GATC 2 cut(s) 12, 63
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 2 cut(s) 176, 261
EarI CTCTTC 2 cut(s) 176, 261
EclXI CGGCCG 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 209
Eco81I CCTNAGG 1 cut(s) 125
FaeI CATG 4 cut(s) 197, 211, 244, 308
FaiI YATR 6 cut(s) 195, 209, 242, 285, 290, 306
FatI CATG 4 cut(s) 193, 207, 240, 304
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 91
HapII CCGG 1 cut(s) 78
Hin1II CATG 4 cut(s) 197, 211, 244, 308
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 1 cut(s) 103
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 4 cut(s) 40, 67, 124, 332
HpyAV CCTTC 2 cut(s) 78, 111
HpyCH4V TGCA 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 4 cut(s) 197, 211, 244, 308
Kzo9I GATC 2 cut(s) 12, 63
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 6 cut(s) 52, 91, 92, 137, 185, 230
MaeI CTAG 1 cut(s) 138
MalI GATC 2 cut(s) 14, 65
MboI GATC 2 cut(s) 12, 63
MboII GAAGA 4 cut(s) 16, 55, 193, 248
MluCI AATT 4 cut(s) 30, 35, 310, 338
MnlI CCTC 5 cut(s) 87, 120, 264, 328, 339
MseI TTAA 2 cut(s) 33, 156
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 1 cut(s) 78
NdeII GATC 2 cut(s) 12, 63
NlaIII CATG 4 cut(s) 197, 211, 244, 308
NlaIV GGNNCC 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 117
PfeI GAWTC 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 1 cut(s) 90
PsiI TTATAA 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 2 cut(s) 33, 156
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 12, 63
Sau96I GGNCC 1 cut(s) 57
SetI ASST 6 cut(s) 75, 122, 139, 178, 283, 326
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 4 cut(s) 30, 35, 310, 338
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 138
TaqI TCGA 2 cut(s) 15, 82
TasI AATT 4 cut(s) 30, 35, 310, 338
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 2 cut(s) 33, 156
Tru9I TTAA 2 cut(s) 33, 156
TspDTI ATGAA 3 cut(s) 17, 224, 229
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 2 cut(s) 35, 338
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.