Rroxscaffold_2G00078840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016109
Physical Location & Seq
Reverse (-)
2016784 .. 2017296
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078840.1

Sequence Viewer

Length: 513 bp
ATGACGACCTCCGGCGCCGCCAAGCTCCCCAGATACCAGAGATTGAGGCAGCACGACGACGACGACGGTTACTACGATTTCGAGAAGGAGAGGGTGGTGGTCACGAAGGCCAAGAGTAGCAGCAGCATTATCAGTTGGTACAAGCTCAAGTCGAGGCTGGTGCCGAGTGTTAGCCTCAGGAGGAGGTTCAGGCTGAGAAGGAGAGTCGTGAGCTTGAGGAGGTTGTTGCGGCTGAGGAGGAAGATCAAGTTGGCTTGTAGTCATCTCAGAGTTTCGTGCCAGAAAGTGGTGAAGAGATTAAAGGATGGGCAGTCTCAGTTTGGCGATCTGTTTGCCGGAAACTATATGTTCTTGCAGGTCAATCCTTCGTCGTTGAAGTGCCTTGATCACCGCCGGAGAAATCTCGCCGGAGCAGGTGGGGAACAGAAGCAACACCACCACCACCACCGCCTTCAGTTTCAGAACTTCCCTTCGAGGACAACAGGAATGGGGTATACCTTTCCAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

20.02

Weight (kDa)

11.37

Isoelectric Point (pI)

72.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14410 AT5G14410
fragaria_vesca FvH4_6g51980
prunus_persica Prupe.3G295100_v2.0.a1 Prupe.5G162900_v2.0.a1
pyrus_communis pycom06g14500 pycom14g14000 pycom17g01840
rosa_chinensis RchiOBHm_Chr2g0173451
rosa_laevigata RLG00000022191
rosa_multiflora Rmu_sc0015463.1_g000006 Rmu_sc0019120.1_g000002
rosa_roxburghii Rroxscaffold_2G00078840
rosa_rugosa Rorug02G0570600
rosa_wichuraiana Rw2G053280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 404
Acc36I ACCTGC 2 cut(s) 346, 404
AccB1I GGYRCC 2 cut(s) 14, 160
AccB7I CCANNNNNTGG 1 cut(s) 286
AccI GTMKAC 1 cut(s) 494
AciI CCGC 4 cut(s) 18, 229, 391, 448
AcuI CTGAAG 1 cut(s) 437
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 25, 145, 213
AluI AGCT 3 cut(s) 25, 145, 213
Alw26I GTCTC 1 cut(s) 318
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 3 cut(s) 49, 120, 123
AspLEI GCGC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 301, 380
AxyI CCTNAGG 1 cut(s) 176
BanI GGYRCC 2 cut(s) 14, 160
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 61, 132, 135
BccI CCATC 1 cut(s) 299
BcgI CGANNNNNNTGC 4 cut(s) 142, 176, 314, 348
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 18
BfuAI ACCTGC 2 cut(s) 346, 404
BisI GCNGC 5 cut(s) 18, 50, 121, 124, 230
BlsI GCNGC 5 cut(s) 19, 51, 122, 125, 231
BmiI GGNNCC 2 cut(s) 16, 162
Bpu10I CCTNAGC 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 131, 235
BsaHI GRCGYC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse21I CCTNAGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 5 cut(s) 185, 190, 224, 280, 329
BseRI GAGGAG 3 cut(s) 196, 232, 250
BseXI GCAGC 3 cut(s) 61, 132, 135
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 2 cut(s) 14, 160
BsiSI CCGG 4 cut(s) 12, 336, 394, 408
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 318
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 243, 325, 385
BspACI CCGC 4 cut(s) 18, 229, 391, 448
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 5 cut(s) 186, 189, 225, 279, 328
BspLI GGNNCC 2 cut(s) 16, 162
BspMI ACCTGC 2 cut(s) 346, 404
BspT107I GGYRCC 2 cut(s) 14, 160
BssMI GATC 3 cut(s) 243, 325, 385
BssNAI GTATAC 1 cut(s) 495
BssNI GRCGYC 1 cut(s) 15
Bst1107I GTATAC 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 15
BstDEI CTNAG 5 cut(s) 176, 194, 233, 266, 315
BstF5I GGATG 1 cut(s) 310
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 3 cut(s) 246, 328, 388
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 3 cut(s) 243, 325, 385
BstV1I GCAGC 3 cut(s) 61, 132, 135
BstZ17I GTATAC 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 176
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 310
BveI ACCTGC 2 cut(s) 346, 404
CfoI GCGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 139
CviJI RGCY 9 cut(s) 25, 110, 145, 157, 174, 193, 213, 232, 254
CviKI_1 RGCY 9 cut(s) 25, 110, 145, 157, 174, 193, 213, 232, 254
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 5 cut(s) 176, 194, 233, 266, 315
DinI GGCGCC 1 cut(s) 16
DpnI GATC 3 cut(s) 245, 327, 387
DpnII GATC 3 cut(s) 243, 325, 385
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 437
Eco81I CCTNAGG 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
FaiI YATR 3 cut(s) 345, 347, 495
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 5 cut(s) 18, 50, 121, 124, 230
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 5 cut(s) 18, 50, 121, 124, 230
GlaI GCGC 1 cut(s) 16
GluI GCNGC 5 cut(s) 18, 50, 121, 124, 230
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 110
HapII CCGG 4 cut(s) 12, 336, 394, 408
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 1 cut(s) 204
HpaII CCGG 4 cut(s) 12, 336, 394, 408
HphI GGTGA 2 cut(s) 301, 380
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 2 cut(s) 269, 462
Hpy188III TCNNGA 4 cut(s) 82, 103, 178, 208
Hpy8I GTNNAC 1 cut(s) 495
Hpy99I CGWCG 5 cut(s) 59, 62, 65, 68, 373
HpyAV CCTTC 6 cut(s) 79, 100, 192, 375, 461, 480
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 355
HpyF3I CTNAG 5 cut(s) 176, 194, 233, 266, 315
Hsp92I GRCGYC 1 cut(s) 15
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 243, 325, 385
LmnI GCTCC 2 cut(s) 30, 410
Lsp1109I GCAGC 3 cut(s) 61, 132, 135
MaeIII GTNAC 2 cut(s) 68, 100
MalI GATC 3 cut(s) 245, 327, 387
MboI GATC 3 cut(s) 243, 325, 385
MboII GAAGA 2 cut(s) 253, 304
Mly113I GGCGCC 1 cut(s) 15
MlyI GAGTC 1 cut(s) 213
MseI TTAA 1 cut(s) 299
MspI CCGG 4 cut(s) 12, 336, 394, 408
NarI GGCGCC 1 cut(s) 15
NdeII GATC 3 cut(s) 243, 325, 385
NlaIV GGNNCC 2 cut(s) 16, 162
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 404
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 72
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 5 cut(s) 19, 51, 122, 125, 231
PleI GAGTC 1 cut(s) 212
PluTI GGCGCC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 16, 162
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 5 cut(s) 18, 50, 121, 124, 230
Sau3AI GATC 3 cut(s) 243, 325, 385
SchI GAGTC 1 cut(s) 213
SetI ASST 9 cut(s) 11, 27, 147, 188, 215, 224, 360, 418, 500
SfoI GGCGCC 1 cut(s) 16
SmlI CTYRAG 2 cut(s) 146, 214
SmoI CTYRAG 2 cut(s) 146, 214
SsiI CCGC 4 cut(s) 18, 229, 391, 448
SspDI GGCGCC 1 cut(s) 14
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 81, 152, 473
TauI GCSGC 2 cut(s) 20, 232
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 3 cut(s) 49, 120, 123
Tsp45I GTSAC 1 cut(s) 100
Van91I CCANNNNNTGG 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.