isoform X1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48200 |
| fragaria_vesca | FvH4_5g05550 FvH4_5g05550 FvH4_5g05550 |
| malus_domestica | MD06G1171200.v1.1 |
| prunus_persica | Prupe.5G170900_v2.0.a1 Prupe.5G170900_v2.0.a1 Prupe.5G170900_v2.0.a1 Prupe.5G170900_v2.0.a1 |
| pyrus_communis | pycom06g15260 |
| rosa_chinensis | RchiOBHm_Chr7g0193221 |
| rosa_laevigata | RLG00000004285 |
| rosa_roxburghii | Rroxscaffold_3G00262270 |
| rosa_rugosa | Rorug07G0008400 |
| rosa_samantha | Rh7AG133900 Rh7BG134900 Rh7CG137900 Rh7DG135900 |
| rosa_wichuraiana | Rw7G011450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1112, 1839, 3198 |
| AarI | CACCTGC | 1 cut(s) | 485 |
| AatII | GACGTC | 1 cut(s) | 1388 |
| Acc36I | ACCTGC | 3 cut(s) | 485, 492, 1057 |
| AccB1I | GGYRCC | 1 cut(s) | 1330 |
| AccBSI | CCGCTC | 2 cut(s) | 3138, 3162 |
| AccI | GTMKAC | 2 cut(s) | 467, 2529 |
| AccII | CGCG | 3 cut(s) | 1188, 2196, 2899 |
| AciI | CCGC | 4 cut(s) | 2897, 2899, 3138, 3162 |
| AclI | AACGTT | 1 cut(s) | 249 |
| AclWI | GGATC | 7 cut(s) | 877, 2522, 2825, 2838, 2978, 2991, 3098 |
| AcoI | YGGCCR | 1 cut(s) | 502 |
| AcuI | CTGAAG | 6 cut(s) | 184, 722, 1833, 2159, 2225, 2853 |
| AcyI | GRCGYC | 1 cut(s) | 1385 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 440, 607, 2248 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2244 |
| AhlI | ACTAGT | 1 cut(s) | 1564 |
| AjnI | CCWGG | 2 cut(s) | 310, 600 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 147, 179 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 1083, 1115, 2912, 2930, 2944, 2962 |
| Alw21I | GWGCWC | 4 cut(s) | 1205, 1981, 3017, 3170 |
| Alw26I | GTCTC | 2 cut(s) | 1607, 1639 |
| AlwI | GGATC | 7 cut(s) | 877, 2522, 2825, 2838, 2978, 2991, 3098 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 368 |
| Ama87I | CYCGRG | 2 cut(s) | 899, 1654 |
| AoxI | GGCC | 8 cut(s) | 305, 502, 1399, 2040, 2200, 2311, 2335, 3234 |
| ApeKI | GCWGC | 8 cut(s) | 535, 1394, 2048, 2122, 2170, 2482, 2824, 3020 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1309, 1341 |
| AseI | ATTAAT | 1 cut(s) | 2790 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 250, 819, 1625, 2618 |
| AspA2I | CCTAGG | 1 cut(s) | 2242 |
| AspLEI | GCGC | 1 cut(s) | 1173 |
| AspS9I | GGNCC | 5 cut(s) | 305, 2246, 2312, 2336, 2544 |
| AsuC2I | CCSGG | 2 cut(s) | 2234, 2250 |
| AsuHPI | GGTGA | 8 cut(s) | 235, 564, 616, 761, 1008, 1808, 2248, 2557 |
| AsuII | TTCGAA | 1 cut(s) | 971 |
| AsuNHI | GCTAGC | 1 cut(s) | 2125 |
| AvaI | CYCGRG | 2 cut(s) | 899, 1654 |
| AvaII | GGWCC | 2 cut(s) | 2246, 2544 |
| AvrII | CCTAGG | 1 cut(s) | 2242 |
| BalI | TGGCCA | 1 cut(s) | 504 |
| BamHI | GGATCC | 2 cut(s) | 2830, 2983 |
| BanI | GGYRCC | 1 cut(s) | 1330 |
| BanII | GRGCYC | 3 cut(s) | 435, 3017, 3170 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3079, 3111 |
| Bbv12I | GWGCWC | 4 cut(s) | 1205, 1981, 3017, 3170 |
| BbvI | GCAGC | 8 cut(s) | 547, 1381, 2035, 2109, 2157, 2469, 2811, 3007 |
| BccI | CCATC | 9 cut(s) | 71, 212, 266, 523, 601, 1521, 1839, 3052, 3126 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2143, 2177 |
| BciT130I | CCWGG | 2 cut(s) | 312, 602 |
| BciVI | GTATCC | 2 cut(s) | 1109, 1726 |
| BclI | TGATCA | 1 cut(s) | 2907 |
| BcnI | CCSGG | 2 cut(s) | 2234, 2250 |
| BcoDI | GTCTC | 2 cut(s) | 1607, 1639 |
| BcuI | ACTAGT | 1 cut(s) | 1564 |
| BfmI | CTRYAG | 7 cut(s) | 436, 533, 834, 948, 1395, 1597, 2997 |
| BfoI | RGCGCY | 1 cut(s) | 1174 |
| BfuAI | ACCTGC | 3 cut(s) | 485, 492, 1057 |
| BfuI | GTATCC | 2 cut(s) | 1109, 1726 |
| BglII | AGATCT | 2 cut(s) | 383, 2326 |
| BisI | GCNGC | 9 cut(s) | 536, 1395, 2049, 2123, 2171, 2483, 2825, 2897, 3021 |
| BlnI | CCTAGG | 1 cut(s) | 2242 |
| BlpI | GCTNAGC | 1 cut(s) | 3016 |
| BlsI | GCNGC | 9 cut(s) | 537, 1396, 2050, 2124, 2172, 2484, 2826, 2898, 3022 |
| Bme1390I | CCNGG | 4 cut(s) | 312, 602, 2234, 2250 |
| Bme18I | GGWCC | 2 cut(s) | 2246, 2544 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2244 |
| BmeT110I | CYCGRG | 2 cut(s) | 899, 1654 |
| BmgT120I | GGNCC | 5 cut(s) | 305, 2246, 2312, 2336, 2544 |
| BmiI | GGNNCC | 6 cut(s) | 48, 111, 1332, 2338, 2832, 2985 |
| BmrFI | CCNGG | 4 cut(s) | 312, 602, 2234, 2250 |
| BmrI | ACTGGG | 1 cut(s) | 1625 |
| BmsI | GCATC | 5 cut(s) | 1307, 1472, 2200, 2416, 2867 |
| BmtI | GCTAGC | 1 cut(s) | 2129 |
| BmuI | ACTGGG | 1 cut(s) | 1625 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1811, 1843, 2639, 2671 |
| BpmI | CTGGAG | 3 cut(s) | 294, 984, 1290 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3016 |
| Bpu14I | TTCGAA | 1 cut(s) | 971 |
| BpuEI | CTTGAG | 3 cut(s) | 730, 1057, 2594 |
| BpuMI | CCSGG | 2 cut(s) | 2234, 2250 |
| BsaBI | GATNNNNATC | 1 cut(s) | 276 |
| BsaHI | GRCGYC | 1 cut(s) | 1385 |
| BsaJI | CCNNGG | 7 cut(s) | 898, 1607, 2242, 2897, 2916, 2967, 3035 |
| BsaWI | WCCGGW | 1 cut(s) | 3009 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2930, 2960 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 440, 607, 2248 |
| Bse1I | ACTGG | 7 cut(s) | 341, 818, 1001, 1631, 1853, 2219, 2664 |
| Bse3DI | GCAATG | 4 cut(s) | 1209, 2021, 2380, 2819 |
| Bse8I | GATNNNNATC | 1 cut(s) | 276 |
| BseBI | CCWGG | 2 cut(s) | 312, 602 |
| BseDI | CCNNGG | 7 cut(s) | 898, 1607, 2242, 2897, 2916, 2967, 3035 |
| BseGI | GGATG | 7 cut(s) | 220, 277, 464, 1831, 1973, 2882, 3245 |
| BseJI | GATNNNNATC | 1 cut(s) | 276 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 440, 607, 2248 |
| BseMI | GCAATG | 4 cut(s) | 1209, 2021, 2380, 2819 |
| BseNI | ACTGG | 7 cut(s) | 341, 818, 1001, 1631, 1853, 2219, 2664 |
| BseRI | GAGGAG | 4 cut(s) | 462, 2076, 2079, 3160 |
| BseXI | GCAGC | 8 cut(s) | 547, 1381, 2035, 2109, 2157, 2469, 2811, 3007 |
| BseYI | CCCAGC | 1 cut(s) | 1649 |
| BsgI | GTGCAG | 3 cut(s) | 280, 607, 785 |
| Bsh1236I | CGCG | 3 cut(s) | 1188, 2196, 2899 |
| BshFI | GGCC | 8 cut(s) | 307, 504, 1401, 2042, 2202, 2313, 2337, 3236 |
| BshNI | GGYRCC | 1 cut(s) | 1330 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1205, 1981, 3017, 3170 |
| BsiHKCI | CYCGRG | 2 cut(s) | 899, 1654 |
| BsiSI | CCGG | 3 cut(s) | 2233, 2249, 3010 |
| BslFI | GGGAC | 2 cut(s) | 1009, 2405 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 440, 607, 2248 |
| BsmAI | GTCTC | 2 cut(s) | 1607, 1639 |
| BsmFI | GGGAC | 2 cut(s) | 1009, 2405 |
| BsmI | GAATGC | 3 cut(s) | 119, 1587, 2495 |
| BsnI | GGCC | 8 cut(s) | 307, 504, 1401, 2042, 2202, 2313, 2337, 3236 |
| BsoBI | CYCGRG | 2 cut(s) | 899, 1654 |
| Bsp119I | TTCGAA | 1 cut(s) | 971 |
| Bsp1286I | GDGCHC | 5 cut(s) | 435, 1205, 1981, 3017, 3170 |
| Bsp1407I | TGTACA | 3 cut(s) | 185, 2808, 3219 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3016 |
| Bsp19I | CCATGG | 1 cut(s) | 1607 |
| Bsp68I | TCGCGA | 2 cut(s) | 1188, 2196 |
| BspACI | CCGC | 4 cut(s) | 2897, 2899, 3138, 3162 |
| BspANI | GGCC | 8 cut(s) | 307, 504, 1401, 2042, 2202, 2313, 2337, 3236 |
| BspFNI | CGCG | 3 cut(s) | 1188, 2196, 2899 |
| BspLI | GGNNCC | 6 cut(s) | 48, 111, 1332, 2338, 2832, 2985 |
| BspMAI | CTGCAG | 3 cut(s) | 537, 838, 1399 |
| BspMI | ACCTGC | 3 cut(s) | 485, 492, 1057 |
| BspOI | GCTAGC | 1 cut(s) | 2129 |
| BspPI | GGATC | 7 cut(s) | 877, 2522, 2825, 2838, 2978, 2991, 3098 |
| BspT104I | TTCGAA | 1 cut(s) | 971 |
| BspT107I | GGYRCC | 1 cut(s) | 1330 |
| BsrBI | CCGCTC | 2 cut(s) | 3138, 3162 |
| BsrDI | GCAATG | 4 cut(s) | 1209, 2021, 2380, 2819 |
| BsrGI | TGTACA | 3 cut(s) | 185, 2808, 3219 |
| BsrI | ACTGG | 7 cut(s) | 341, 818, 1001, 1631, 1853, 2219, 2664 |
| BssECI | CCNNGG | 7 cut(s) | 898, 1607, 2242, 2897, 2916, 2967, 3035 |
| BssNI | GRCGYC | 1 cut(s) | 1385 |
| BssT1I | CCWWGG | 3 cut(s) | 1607, 2242, 2916 |
| Bst2UI | CCWGG | 2 cut(s) | 312, 602 |
| Bst6I | CTCTTC | 3 cut(s) | 561, 1150, 1710 |
| BstACI | GRCGYC | 1 cut(s) | 1385 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1702 |
| BstAUI | TGTACA | 3 cut(s) | 185, 2808, 3219 |
| BstBI | TTCGAA | 1 cut(s) | 971 |
| BstDSI | CCRYGG | 3 cut(s) | 1607, 2897, 3035 |
| BstEII | GGTNACC | 2 cut(s) | 2236, 3005 |
| BstF5I | GGATG | 7 cut(s) | 220, 277, 464, 1831, 1973, 2882, 3245 |
| BstFNI | CGCG | 3 cut(s) | 1188, 2196, 2899 |
| BstH2I | RGCGCY | 1 cut(s) | 1174 |
| BstHHI | GCGC | 1 cut(s) | 1173 |
| BstMAI | GTCTC | 2 cut(s) | 1607, 1639 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 116, 204, 739, 915, 1179, 1702, 2048, 2379, 3242 |
| BstNI | CCWGG | 2 cut(s) | 312, 602 |
| BstNSI | RCATGY | 3 cut(s) | 119, 2353, 2691 |
| BstPI | GGTNACC | 2 cut(s) | 2236, 3005 |
| BstSCI | CCNGG | 4 cut(s) | 310, 600, 2232, 2248 |
| BstSFI | CTRYAG | 7 cut(s) | 436, 533, 834, 948, 1395, 1597, 2997 |
| BstUI | CGCG | 3 cut(s) | 1188, 2196, 2899 |
| BstV1I | GCAGC | 8 cut(s) | 547, 1381, 2035, 2109, 2157, 2469, 2811, 3007 |
| BstX2I | RGATCY | 4 cut(s) | 383, 2326, 2830, 2983 |
| BstYI | RGATCY | 4 cut(s) | 383, 2326, 2830, 2983 |
| BsuI | GTATCC | 2 cut(s) | 1109, 1726 |
| BsuRI | GGCC | 8 cut(s) | 307, 504, 1401, 2042, 2202, 2313, 2337, 3236 |
| BtgI | CCRYGG | 3 cut(s) | 1607, 2897, 3035 |
| BtgZI | GCGATG | 1 cut(s) | 2177 |
| BtsCI | GGATG | 7 cut(s) | 220, 277, 464, 1831, 1973, 2882, 3245 |
| BtsIMutI | CAGTG | 8 cut(s) | 433, 768, 963, 1586, 1739, 2212, 2270, 2671 |
| BtuMI | TCGCGA | 2 cut(s) | 1188, 2196 |
| BveI | ACCTGC | 3 cut(s) | 485, 492, 1057 |
| CaiI | CAGNNNCTG | 1 cut(s) | 368 |
| CfoI | GCGC | 1 cut(s) | 1173 |
| Cfr13I | GGNCC | 5 cut(s) | 305, 2246, 2312, 2336, 2544 |
| Cfr42I | CCGCGG | 1 cut(s) | 2900 |
| CseI | GACGC | 1 cut(s) | 931 |
| DraI | TTTAAA | 1 cut(s) | 846 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2244 |
| EaeI | YGGCCR | 1 cut(s) | 502 |
| Eam1104I | CTCTTC | 3 cut(s) | 561, 1150, 1710 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2244 |
| EarI | CTCTTC | 3 cut(s) | 561, 1150, 1710 |
| Ecl136II | GAGCTC | 2 cut(s) | 3015, 3168 |
| Eco130I | CCWWGG | 3 cut(s) | 1607, 2242, 2916 |
| Eco147I | AGGCCT | 3 cut(s) | 1401, 2042, 2202 |
| Eco24I | GRGCYC | 3 cut(s) | 435, 3017, 3170 |
| Eco32I | GATATC | 1 cut(s) | 1341 |
| Eco47I | GGWCC | 2 cut(s) | 2246, 2544 |
| Eco53kI | GAGCTC | 2 cut(s) | 3015, 3168 |
| Eco57I | CTGAAG | 6 cut(s) | 184, 722, 1833, 2159, 2225, 2853 |
| Eco88I | CYCGRG | 2 cut(s) | 899, 1654 |
| Eco91I | GGTNACC | 2 cut(s) | 2236, 3005 |
| EcoICRI | GAGCTC | 2 cut(s) | 3015, 3168 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2336 |
| EcoO65I | GGTNACC | 2 cut(s) | 2236, 3005 |
| EcoRI | GAATTC | 1 cut(s) | 826 |
| EcoRII | CCWGG | 2 cut(s) | 310, 600 |
| EcoRV | GATATC | 1 cut(s) | 1341 |
| EcoT14I | CCWWGG | 3 cut(s) | 1607, 2242, 2916 |
| EcoT22I | ATGCAT | 2 cut(s) | 121, 2806 |
| EcoT38I | GRGCYC | 3 cut(s) | 435, 3017, 3170 |
| ErhI | CCWWGG | 3 cut(s) | 1607, 2242, 2916 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2603, 2635 |
| FaqI | GGGAC | 2 cut(s) | 1009, 2405 |
| FauI | CCCGC | 2 cut(s) | 3131, 3155 |
| FbaI | TGATCA | 1 cut(s) | 2907 |
| FblI | GTMKAC | 2 cut(s) | 467, 2529 |
| Fnu4HI | GCNGC | 9 cut(s) | 536, 1395, 2049, 2123, 2171, 2483, 2825, 2897, 3021 |
| FokI | GGATG | 7 cut(s) | 227, 284, 471, 1818, 1980, 2889, 3232 |
| FriOI | GRGCYC | 3 cut(s) | 435, 3017, 3170 |
| Fsp4HI | GCNGC | 9 cut(s) | 536, 1395, 2049, 2123, 2171, 2483, 2825, 2897, 3021 |
| GlaI | GCGC | 1 cut(s) | 1172 |
| GluI | GCNGC | 9 cut(s) | 536, 1395, 2049, 2123, 2171, 2483, 2825, 2897, 3021 |
| GsaI | CCCAGC | 1 cut(s) | 1653 |
| GsuI | CTGGAG | 3 cut(s) | 294, 984, 1290 |
| HaeII | RGCGCY | 1 cut(s) | 1174 |
| HaeIII | GGCC | 8 cut(s) | 307, 504, 1401, 2042, 2202, 2313, 2337, 3236 |
| HapII | CCGG | 3 cut(s) | 2233, 2249, 3010 |
| HgaI | GACGC | 1 cut(s) | 931 |
| HhaI | GCGC | 1 cut(s) | 1173 |
| Hin1I | GRCGYC | 1 cut(s) | 1385 |
| Hin6I | GCGC | 1 cut(s) | 1171 |
| HinP1I | GCGC | 1 cut(s) | 1171 |
| HincII | GTYRAC | 3 cut(s) | 706, 1383, 2282 |
| HindII | GTYRAC | 3 cut(s) | 706, 1383, 2282 |
| HindIII | AAGCTT | 2 cut(s) | 156, 1180 |
| HpaII | CCGG | 3 cut(s) | 2233, 2249, 3010 |
| HphI | GGTGA | 8 cut(s) | 235, 564, 616, 761, 1008, 1808, 2248, 2557 |
| Hpy166II | GTNNAC | 8 cut(s) | 468, 706, 1067, 1383, 1577, 2268, 2282, 2530 |
| Hpy8I | GTNNAC | 8 cut(s) | 468, 706, 1067, 1383, 1577, 2268, 2282, 2530 |
| Hpy99I | CGWCG | 1 cut(s) | 947 |
| HpyCH4IV | ACGT | 3 cut(s) | 249, 1385, 1915 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 116, 204, 739, 915, 1179, 1702, 2048, 2379, 3242 |
| HpySE526I | ACGT | 3 cut(s) | 249, 1385, 1915 |
| Hsp92I | GRCGYC | 1 cut(s) | 1385 |
| HspAI | GCGC | 1 cut(s) | 1171 |
| Ksp22I | TGATCA | 1 cut(s) | 2907 |
| KspI | CCGCGG | 1 cut(s) | 2900 |
| Lsp1109I | GCAGC | 8 cut(s) | 547, 1381, 2035, 2109, 2157, 2469, 2811, 3007 |
| LweI | GCATC | 5 cut(s) | 1307, 1472, 2200, 2416, 2867 |
| MaeII | ACGT | 3 cut(s) | 249, 1385, 1915 |
| MbiI | CCGCTC | 2 cut(s) | 3138, 3162 |
| MflI | RGATCY | 4 cut(s) | 383, 2326, 2830, 2983 |
| MhlI | GDGCHC | 5 cut(s) | 435, 1205, 1981, 3017, 3170 |
| MlsI | TGGCCA | 1 cut(s) | 504 |
| MluNI | TGGCCA | 1 cut(s) | 504 |
| MlyI | GAGTC | 4 cut(s) | 188, 991, 2387, 2965 |
| MmeI | TCCRAC | 7 cut(s) | 145, 1770, 1787, 2614, 2653, 2749, 2854 |
| Mox20I | TGGCCA | 1 cut(s) | 504 |
| Mph1103I | ATGCAT | 2 cut(s) | 121, 2806 |
| MroXI | GAANNNNTTC | 4 cut(s) | 250, 819, 1625, 2618 |
| MscI | TGGCCA | 1 cut(s) | 504 |
| MseI | TTAA | 8 cut(s) | 12, 96, 845, 1551, 1725, 2625, 2790, 2849 |
| MslI | CAYNNNNRTG | 2 cut(s) | 55, 3250 |
| Msp20I | TGGCCA | 1 cut(s) | 504 |
| MspA1I | CMGCKG | 5 cut(s) | 742, 2641, 2720, 2899, 3020 |
| MspI | CCGG | 3 cut(s) | 2233, 2249, 3010 |
| MspR9I | CCNGG | 4 cut(s) | 312, 602, 2234, 2250 |
| Mva1269I | GAATGC | 3 cut(s) | 119, 1587, 2495 |
| MvaI | CCWGG | 2 cut(s) | 312, 602 |
| MvnI | CGCG | 3 cut(s) | 1188, 2196, 2899 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 116, 204, 739, 915, 1179, 1702, 2048, 2379, 3242 |
| NciI | CCSGG | 2 cut(s) | 2234, 2250 |
| NcoI | CCATGG | 1 cut(s) | 1607 |
| NheI | GCTAGC | 1 cut(s) | 2125 |
| NlaIV | GGNNCC | 6 cut(s) | 48, 111, 1332, 2338, 2832, 2985 |
| NmuCI | GTSAC | 5 cut(s) | 952, 1315, 2107, 2236, 3116 |
| NruI | TCGCGA | 2 cut(s) | 1188, 2196 |
| NsiI | ATGCAT | 2 cut(s) | 121, 2806 |
| NspI | RCATGY | 3 cut(s) | 119, 2353, 2691 |
| NspV | TTCGAA | 1 cut(s) | 971 |
| PaeR7I | CTCGAG | 1 cut(s) | 1654 |
| PaqCI | CACCTGC | 1 cut(s) | 485 |
| PceI | AGGCCT | 3 cut(s) | 1401, 2042, 2202 |
| PctI | GAATGC | 3 cut(s) | 119, 1587, 2495 |
| PdmI | GAANNNNTTC | 4 cut(s) | 250, 819, 1625, 2618 |
| PfeI | GAWTC | 7 cut(s) | 34, 669, 715, 904, 1037, 1613, 1906 |
| PfoI | TCCNGGA | 1 cut(s) | 310 |
| PkrI | GCNGC | 9 cut(s) | 537, 1396, 2050, 2124, 2172, 2484, 2826, 2898, 3022 |
| PleI | GAGTC | 4 cut(s) | 187, 991, 2387, 2964 |
| PpsI | GAGTC | 4 cut(s) | 187, 991, 2387, 2964 |
| PshBI | ATTAAT | 1 cut(s) | 2790 |
| PsiI | TTATAA | 3 cut(s) | 1112, 1839, 3198 |
| Psp124BI | GAGCTC | 2 cut(s) | 3017, 3170 |
| Psp1406I | AACGTT | 1 cut(s) | 249 |
| Psp6I | CCWGG | 2 cut(s) | 310, 600 |
| PspEI | GGTNACC | 2 cut(s) | 2236, 3005 |
| PspFI | CCCAGC | 1 cut(s) | 1649 |
| PspGI | CCWGG | 2 cut(s) | 310, 600 |
| PspN4I | GGNNCC | 6 cut(s) | 48, 111, 1332, 2338, 2832, 2985 |
| PspPI | GGNCC | 5 cut(s) | 305, 2246, 2312, 2336, 2544 |
| PspXI | VCTCGAGB | 1 cut(s) | 1654 |
| PstI | CTGCAG | 3 cut(s) | 537, 838, 1399 |
| PstNI | CAGNNNCTG | 1 cut(s) | 368 |
| PsuI | RGATCY | 4 cut(s) | 383, 2326, 2830, 2983 |
| PvuII | CAGCTG | 4 cut(s) | 742, 2641, 2720, 3020 |
| RruI | TCGCGA | 2 cut(s) | 1188, 2196 |
| RseI | CAYNNNNRTG | 2 cut(s) | 55, 3250 |
| SacI | GAGCTC | 2 cut(s) | 3017, 3170 |
| SacII | CCGCGG | 1 cut(s) | 2900 |
| SaqAI | TTAA | 8 cut(s) | 12, 96, 845, 1551, 1725, 2625, 2790, 2849 |
| SatI | GCNGC | 9 cut(s) | 536, 1395, 2049, 2123, 2171, 2483, 2825, 2897, 3021 |
| Sau96I | GGNCC | 5 cut(s) | 305, 2246, 2312, 2336, 2544 |
| SchI | GAGTC | 4 cut(s) | 188, 991, 2387, 2965 |
| ScrFI | CCNGG | 4 cut(s) | 312, 602, 2234, 2250 |
| SduI | GDGCHC | 5 cut(s) | 435, 1205, 1981, 3017, 3170 |
| SfaNI | GCATC | 5 cut(s) | 1307, 1472, 2200, 2416, 2867 |
| SfcI | CTRYAG | 7 cut(s) | 436, 533, 834, 948, 1395, 1597, 2997 |
| Sfr274I | CTCGAG | 1 cut(s) | 1654 |
| Sfr303I | CCGCGG | 1 cut(s) | 2900 |
| SfuI | TTCGAA | 1 cut(s) | 971 |
| SgrBI | CCGCGG | 1 cut(s) | 2900 |
| SinI | GGWCC | 2 cut(s) | 2246, 2544 |
| SlaI | CTCGAG | 1 cut(s) | 1654 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 55, 3250 |
| SmlI | CTYRAG | 4 cut(s) | 709, 1072, 1654, 2609 |
| SmoI | CTYRAG | 4 cut(s) | 709, 1072, 1654, 2609 |
| SpeI | ACTAGT | 1 cut(s) | 1564 |
| SseBI | AGGCCT | 3 cut(s) | 1401, 2042, 2202 |
| SsiI | CCGC | 4 cut(s) | 2897, 2899, 3138, 3162 |
| SspI | AATATT | 1 cut(s) | 418 |
| SstI | GAGCTC | 2 cut(s) | 3017, 3170 |
| StuI | AGGCCT | 3 cut(s) | 1401, 2042, 2202 |
| StyD4I | CCNGG | 4 cut(s) | 310, 600, 2232, 2248 |
| StyI | CCWWGG | 3 cut(s) | 1607, 2242, 2916 |
| TaiI | ACGT | 3 cut(s) | 252, 1388, 1918 |
| TaqII | GACCGA | 1 cut(s) | 2981 |
| TatI | WGTACW | 7 cut(s) | 185, 804, 1064, 2178, 2346, 2808, 3219 |
| TauI | GCSGC | 1 cut(s) | 2899 |
| TfiI | GAWTC | 7 cut(s) | 34, 669, 715, 904, 1037, 1613, 1906 |
| Tru1I | TTAA | 8 cut(s) | 12, 96, 845, 1551, 1725, 2625, 2790, 2849 |
| Tru9I | TTAA | 8 cut(s) | 12, 96, 845, 1551, 1725, 2625, 2790, 2849 |
| TscAI | CASTG | 8 cut(s) | 433, 768, 963, 1586, 1746, 2219, 2270, 2671 |
| TseFI | GTSAC | 5 cut(s) | 952, 1315, 2107, 2236, 3116 |
| TseI | GCWGC | 8 cut(s) | 535, 1394, 2048, 2122, 2170, 2482, 2824, 3020 |
| Tsp45I | GTSAC | 5 cut(s) | 952, 1315, 2107, 2236, 3116 |
| TspGWI | ACGGA | 3 cut(s) | 603, 671, 3178 |
| TspRI | CASTG | 8 cut(s) | 433, 768, 963, 1586, 1746, 2219, 2270, 2671 |
| VpaK11BI | GGWCC | 2 cut(s) | 2246, 2544 |
| VspI | ATTAAT | 1 cut(s) | 2790 |
| XbaI | TCTAGA | 2 cut(s) | 380, 1523 |
| XceI | RCATGY | 3 cut(s) | 119, 2353, 2691 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2453 |
| XhoI | CTCGAG | 1 cut(s) | 1654 |
| XmaJI | CCTAGG | 1 cut(s) | 2242 |
| XmiI | GTMKAC | 2 cut(s) | 467, 2529 |
| XmnI | GAANNNNTTC | 4 cut(s) | 250, 819, 1625, 2618 |
| ZraI | GACGTC | 1 cut(s) | 1386 |
| Zsp2I | ATGCAT | 2 cut(s) | 121, 2806 |