isoform X1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48200 |
| fragaria_vesca | FvH4_5g05550 FvH4_5g05550 FvH4_5g05550 |
| malus_domestica | MD06G1171200.v1.1 |
| prunus_persica | Prupe.5G170900_v2.0.a1 Prupe.5G170900_v2.0.a1 Prupe.5G170900_v2.0.a1 Prupe.5G170900_v2.0.a1 |
| pyrus_communis | pycom06g15260 |
| rosa_chinensis | RchiOBHm_Chr7g0193221 |
| rosa_laevigata | RLG00000004285 |
| rosa_roxburghii | Rroxscaffold_3G00262270 |
| rosa_rugosa | Rorug07G0008400 |
| rosa_samantha | Rh7AG133900 Rh7BG134900 Rh7CG137900 Rh7DG135900 |
| rosa_wichuraiana | Rw7G011450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1710 |
| AarI | CACCTGC | 1 cut(s) | 485 |
| Acc36I | ACCTGC | 2 cut(s) | 485, 492 |
| AccBSI | CCGCTC | 1 cut(s) | 1842 |
| AccII | CGCG | 2 cut(s) | 667, 2516 |
| AciI | CCGC | 7 cut(s) | 444, 923, 1265, 1757, 1842, 2514, 2516 |
| AclWI | GGATC | 3 cut(s) | 592, 1771, 2207 |
| AcsI | RAATTY | 9 cut(s) | 661, 840, 911, 973, 1433, 1560, 1729, 1959, 2519 |
| AcuI | CTGAAG | 4 cut(s) | 722, 1563, 1593, 1704 |
| AfaI | GTAC | 7 cut(s) | 257, 354, 678, 1076, 1785, 1942, 2033 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 607, 711 |
| AflII | CTTAAG | 2 cut(s) | 95, 2294 |
| AflIII | ACRYGT | 1 cut(s) | 1786 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1996 |
| AhlI | ACTAGT | 1 cut(s) | 1927 |
| AjnI | CCWGG | 2 cut(s) | 600, 2000 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 147, 179, 182, 214, 1494, 1526 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1810, 1842 |
| AluBI | AGCT | 7 cut(s) | 110, 158, 211, 1487, 1497, 1524, 1922 |
| AluI | AGCT | 7 cut(s) | 110, 158, 211, 1487, 1497, 1524, 1922 |
| Alw21I | GWGCWC | 1 cut(s) | 1855 |
| Alw26I | GTCTC | 4 cut(s) | 94, 982, 1828, 2502 |
| AlwI | GGATC | 3 cut(s) | 592, 1771, 2207 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 818 |
| AoxI | GGCC | 2 cut(s) | 1914, 2021 |
| ApeKI | GCWGC | 1 cut(s) | 1922 |
| ApoI | RAATTY | 9 cut(s) | 661, 840, 911, 973, 1433, 1560, 1729, 1959, 2519 |
| AseI | ATTAAT | 2 cut(s) | 1098, 2475 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 819, 1496 |
| AspS9I | GGNCC | 2 cut(s) | 1998, 2022 |
| AsuHPI | GGTGA | 4 cut(s) | 761, 1679, 1771, 2087 |
| AsuII | TTCGAA | 1 cut(s) | 230 |
| AsuNHI | GCTAGC | 1 cut(s) | 176 |
| AvaII | GGWCC | 1 cut(s) | 1998 |
| AxyI | CCTNAGG | 1 cut(s) | 710 |
| BaeGI | GKGCMC | 1 cut(s) | 1203 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 390, 423 |
| BanII | GRGCYC | 1 cut(s) | 1272 |
| BbsI | GAAGAC | 2 cut(s) | 697, 2115 |
| Bbv12I | GWGCWC | 1 cut(s) | 1855 |
| BbvI | GCAGC | 1 cut(s) | 1909 |
| BccI | CCATC | 5 cut(s) | 212, 266, 523, 1392, 2220 |
| BceAI | ACGGC | 2 cut(s) | 457, 2287 |
| BciT130I | CCWGG | 2 cut(s) | 602, 2002 |
| BciVI | GTATCC | 1 cut(s) | 2450 |
| BclI | TGATCA | 1 cut(s) | 2524 |
| BcoDI | GTCTC | 4 cut(s) | 94, 982, 1828, 2502 |
| BcuI | ACTAGT | 1 cut(s) | 1927 |
| BfaI | CTAG | 9 cut(s) | 177, 212, 488, 939, 1163, 1395, 1580, 1781, 1928 |
| BfmI | CTRYAG | 1 cut(s) | 1534 |
| BfrI | CTTAAG | 2 cut(s) | 95, 2294 |
| BfuAI | ACCTGC | 2 cut(s) | 485, 492 |
| BfuI | GTATCC | 1 cut(s) | 2450 |
| BglII | AGATCT | 2 cut(s) | 383, 2012 |
| BisI | GCNGC | 1 cut(s) | 1923 |
| BlsI | GCNGC | 1 cut(s) | 1924 |
| Bme1390I | CCNGG | 2 cut(s) | 602, 2002 |
| Bme18I | GGWCC | 1 cut(s) | 1998 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1996 |
| BmgT120I | GGNCC | 2 cut(s) | 1998, 2022 |
| BmiI | GGNNCC | 4 cut(s) | 537, 1271, 1999, 2024 |
| BmrFI | CCNGG | 2 cut(s) | 602, 2002 |
| BmrI | ACTGGG | 3 cut(s) | 252, 1146, 2004 |
| BmsI | GCATC | 5 cut(s) | 374, 449, 1175, 1331, 1343 |
| BmtI | GCTAGC | 1 cut(s) | 180 |
| BmuI | ACTGGG | 3 cut(s) | 252, 1146, 2004 |
| BpiI | GAAGAC | 2 cut(s) | 697, 2115 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2324, 2356 |
| BpmI | CTGGAG | 3 cut(s) | 554, 984, 1684 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1918 |
| Bpu14I | TTCGAA | 1 cut(s) | 230 |
| BpuEI | CTTGAG | 2 cut(s) | 294, 364 |
| BsaBI | GATNNNNATC | 1 cut(s) | 463 |
| BsaI | GGTCTC | 1 cut(s) | 94 |
| BsaJI | CCNNGG | 2 cut(s) | 1478, 2514 |
| BsaWI | WCCGGW | 1 cut(s) | 880 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 607, 711 |
| Bse21I | CCTNAGG | 1 cut(s) | 710 |
| Bse3DI | GCAATG | 4 cut(s) | 942, 1412, 2065, 2460 |
| Bse8I | GATNNNNATC | 1 cut(s) | 463 |
| BseBI | CCWGG | 2 cut(s) | 602, 2002 |
| BseDI | CCNNGG | 2 cut(s) | 1478, 2514 |
| BseGI | GGATG | 6 cut(s) | 277, 464, 1147, 1253, 1339, 2509 |
| BseJI | GATNNNNATC | 1 cut(s) | 463 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 607, 711 |
| BseMI | GCAATG | 4 cut(s) | 942, 1412, 2065, 2460 |
| BseRI | GAGGAG | 2 cut(s) | 102, 462 |
| BseSI | GKGCMC | 1 cut(s) | 1203 |
| BseXI | GCAGC | 1 cut(s) | 1909 |
| BseYI | CCCAGC | 1 cut(s) | 1487 |
| BsgI | GTGCAG | 4 cut(s) | 280, 785, 819, 1908 |
| Bsh1236I | CGCG | 2 cut(s) | 667, 2516 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1738 |
| BshFI | GGCC | 2 cut(s) | 1916, 2023 |
| BsiEI | CGRYCG | 1 cut(s) | 1738 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1855 |
| BsiSI | CCGG | 1 cut(s) | 881 |
| BslFI | GGGAC | 2 cut(s) | 319, 1009 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 607, 711 |
| BsmAI | GTCTC | 4 cut(s) | 94, 982, 1828, 2502 |
| BsmFI | GGGAC | 2 cut(s) | 319, 1009 |
| BsmI | GAATGC | 1 cut(s) | 178 |
| BsnI | GGCC | 2 cut(s) | 1916, 2023 |
| Bso31I | GGTCTC | 1 cut(s) | 94 |
| Bsp119I | TTCGAA | 1 cut(s) | 230 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1203, 1272, 1855 |
| Bsp1407I | TGTACA | 1 cut(s) | 1074 |
| Bsp143I | GATC | 8 cut(s) | 383, 597, 1735, 1776, 2012, 2199, 2334, 2524 |
| Bsp19I | CCATGG | 1 cut(s) | 1478 |
| BspACI | CCGC | 7 cut(s) | 444, 923, 1265, 1757, 1842, 2514, 2516 |
| BspANI | GGCC | 2 cut(s) | 1916, 2023 |
| BspFNI | CGCG | 2 cut(s) | 667, 2516 |
| BspLI | GGNNCC | 4 cut(s) | 537, 1271, 1999, 2024 |
| BspMI | ACCTGC | 2 cut(s) | 485, 492 |
| BspOI | GCTAGC | 1 cut(s) | 180 |
| BspPI | GGATC | 3 cut(s) | 592, 1771, 2207 |
| BspT104I | TTCGAA | 1 cut(s) | 230 |
| BspTI | CTTAAG | 2 cut(s) | 95, 2294 |
| BspTNI | GGTCTC | 1 cut(s) | 94 |
| BsrBI | CCGCTC | 1 cut(s) | 1842 |
| BsrDI | GCAATG | 4 cut(s) | 942, 1412, 2065, 2460 |
| BsrGI | TGTACA | 1 cut(s) | 1074 |
| BssECI | CCNNGG | 2 cut(s) | 1478, 2514 |
| BssMI | GATC | 8 cut(s) | 383, 597, 1735, 1776, 2012, 2199, 2334, 2524 |
| BssT1I | CCWWGG | 1 cut(s) | 1478 |
| Bst2UI | CCWGG | 2 cut(s) | 602, 2002 |
| Bst4CI | ACNGT | 8 cut(s) | 72, 343, 352, 763, 958, 1081, 2081, 2445 |
| Bst6I | CTCTTC | 1 cut(s) | 1581 |
| BstAFI | CTTAAG | 2 cut(s) | 95, 2294 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 192 |
| BstAUI | TGTACA | 1 cut(s) | 1074 |
| BstBI | TTCGAA | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 9 cut(s) | 178, 209, 502, 768, 1020, 1291, 1574, 2065, 2069 |
| BstDSI | CCRYGG | 2 cut(s) | 1478, 2514 |
| BstEII | GGTNACC | 1 cut(s) | 2075 |
| BstF5I | GGATG | 6 cut(s) | 277, 464, 1147, 1253, 1339, 2509 |
| BstFNI | CGCG | 2 cut(s) | 667, 2516 |
| BstKTI | GATC | 8 cut(s) | 386, 600, 1738, 1779, 2015, 2202, 2337, 2527 |
| BstMAI | GTCTC | 4 cut(s) | 94, 982, 1828, 2502 |
| BstMBI | GATC | 8 cut(s) | 383, 597, 1735, 1776, 2012, 2199, 2334, 2524 |
| BstMCI | CGRYCG | 1 cut(s) | 1738 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 116, 146, 155, 192, 915, 1244, 1922, 2064 |
| BstNI | CCWGG | 2 cut(s) | 602, 2002 |
| BstNSI | RCATGY | 5 cut(s) | 186, 1576, 1747, 1790, 2038 |
| BstPI | GGTNACC | 1 cut(s) | 2075 |
| BstSCI | CCNGG | 2 cut(s) | 600, 2000 |
| BstSFI | CTRYAG | 1 cut(s) | 1534 |
| BstSLI | GKGCMC | 1 cut(s) | 1203 |
| BstUI | CGCG | 2 cut(s) | 667, 2516 |
| BstV1I | GCAGC | 1 cut(s) | 1909 |
| BstV2I | GAAGAC | 2 cut(s) | 697, 2115 |
| BstX2I | RGATCY | 2 cut(s) | 383, 2012 |
| BstYI | RGATCY | 2 cut(s) | 383, 2012 |
| Bsu36I | CCTNAGG | 1 cut(s) | 710 |
| BsuI | GTATCC | 1 cut(s) | 2450 |
| BsuRI | GGCC | 2 cut(s) | 1916, 2023 |
| BtgI | CCRYGG | 2 cut(s) | 1478, 2514 |
| BtsCI | GGATG | 6 cut(s) | 277, 464, 1147, 1253, 1339, 2509 |
| BtsIMutI | CAGTG | 8 cut(s) | 433, 768, 963, 1077, 1203, 1992, 2356, 2413 |
| BveI | ACCTGC | 2 cut(s) | 485, 492 |
| Cac8I | GCNNGC | 9 cut(s) | 178, 209, 502, 768, 1020, 1291, 1574, 2065, 2069 |
| CaiI | CAGNNNCTG | 1 cut(s) | 818 |
| Cfr13I | GGNCC | 2 cut(s) | 1998, 2022 |
| Cfr42I | CCGCGG | 1 cut(s) | 2517 |
| CseI | GACGC | 1 cut(s) | 2120 |
| Csp6I | GTAC | 7 cut(s) | 256, 353, 677, 1075, 1784, 1941, 2032 |
| CviQI | GTAC | 7 cut(s) | 256, 353, 677, 1075, 1784, 1941, 2032 |
| DpnI | GATC | 8 cut(s) | 385, 599, 1737, 1778, 2014, 2201, 2336, 2526 |
| DpnII | GATC | 8 cut(s) | 383, 597, 1735, 1776, 2012, 2199, 2334, 2524 |
| DraI | TTTAAA | 1 cut(s) | 846 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1996 |
| Eam1104I | CTCTTC | 1 cut(s) | 1581 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1996 |
| EarI | CTCTTC | 1 cut(s) | 1581 |
| EciI | GGCGGA | 1 cut(s) | 459 |
| Eco130I | CCWWGG | 1 cut(s) | 1478 |
| Eco147I | AGGCCT | 1 cut(s) | 1916 |
| Eco24I | GRGCYC | 1 cut(s) | 1272 |
| Eco31I | GGTCTC | 1 cut(s) | 94 |
| Eco32I | GATATC | 1 cut(s) | 1209 |
| Eco47I | GGWCC | 1 cut(s) | 1998 |
| Eco57I | CTGAAG | 4 cut(s) | 722, 1563, 1593, 1704 |
| Eco81I | CCTNAGG | 1 cut(s) | 710 |
| Eco91I | GGTNACC | 1 cut(s) | 2075 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2022 |
| EcoO65I | GGTNACC | 1 cut(s) | 2075 |
| EcoRII | CCWGG | 2 cut(s) | 600, 2000 |
| EcoRV | GATATC | 1 cut(s) | 1209 |
| EcoT14I | CCWWGG | 1 cut(s) | 1478 |
| EcoT22I | ATGCAT | 1 cut(s) | 121 |
| EcoT38I | GRGCYC | 1 cut(s) | 1272 |
| ErhI | CCWWGG | 1 cut(s) | 1478 |
| FaqI | GGGAC | 2 cut(s) | 319, 1009 |
| FauI | CCCGC | 2 cut(s) | 1258, 2521 |
| FbaI | TGATCA | 1 cut(s) | 2524 |
| Fnu4HI | GCNGC | 1 cut(s) | 1923 |
| FokI | GGATG | 6 cut(s) | 284, 471, 1154, 1240, 1326, 2496 |
| FriOI | GRGCYC | 1 cut(s) | 1272 |
| Fsp4HI | GCNGC | 1 cut(s) | 1923 |
| FspBI | CTAG | 9 cut(s) | 177, 212, 488, 939, 1163, 1395, 1580, 1781, 1928 |
| GluI | GCNGC | 1 cut(s) | 1923 |
| GsaI | CCCAGC | 1 cut(s) | 1491 |
| GsuI | CTGGAG | 3 cut(s) | 554, 984, 1684 |
| HaeIII | GGCC | 2 cut(s) | 1916, 2023 |
| HapII | CCGG | 1 cut(s) | 881 |
| HgaI | GACGC | 1 cut(s) | 2120 |
| HindIII | AAGCTT | 2 cut(s) | 156, 1495 |
| HinfI | GANTC | 8 cut(s) | 307, 431, 645, 715, 968, 997, 1553, 2090 |
| HpaII | CCGG | 1 cut(s) | 881 |
| HphI | GGTGA | 4 cut(s) | 761, 1679, 1771, 2087 |
| Hpy166II | GTNNAC | 6 cut(s) | 472, 583, 1075, 1077, 1448, 2221 |
| Hpy8I | GTNNAC | 6 cut(s) | 472, 583, 1075, 1077, 1448, 2221 |
| HpyAV | CCTTC | 7 cut(s) | 1304, 1524, 1538, 1944, 2128, 2253, 2386 |
| HpyCH4III | ACNGT | 8 cut(s) | 72, 343, 352, 763, 958, 1081, 2081, 2445 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 116, 146, 155, 192, 915, 1244, 1922, 2064 |
| Ksp22I | TGATCA | 1 cut(s) | 2524 |
| KspI | CCGCGG | 1 cut(s) | 2517 |
| Kzo9I | GATC | 8 cut(s) | 383, 597, 1735, 1776, 2012, 2199, 2334, 2524 |
| LmnI | GCTCC | 4 cut(s) | 115, 535, 1275, 1850 |
| Lsp1109I | GCAGC | 1 cut(s) | 1909 |
| LweI | GCATC | 5 cut(s) | 374, 449, 1175, 1331, 1343 |
| MaeI | CTAG | 9 cut(s) | 177, 212, 488, 939, 1163, 1395, 1580, 1781, 1928 |
| MaeIII | GTNAC | 9 cut(s) | 370, 1132, 1231, 1408, 1603, 1988, 2075, 2408, 2486 |
| MalI | GATC | 8 cut(s) | 385, 599, 1737, 1778, 2014, 2201, 2336, 2526 |
| MbiI | CCGCTC | 1 cut(s) | 1842 |
| MboI | GATC | 8 cut(s) | 383, 597, 1735, 1776, 2012, 2199, 2334, 2524 |
| MfeI | CAATTG | 1 cut(s) | 190 |
| MflI | RGATCY | 2 cut(s) | 383, 2012 |
| MhlI | GDGCHC | 3 cut(s) | 1203, 1272, 1855 |
| MlyI | GAGTC | 3 cut(s) | 301, 991, 2084 |
| MmeI | TCCRAC | 3 cut(s) | 729, 1641, 2434 |
| Mph1103I | ATGCAT | 1 cut(s) | 121 |
| MroXI | GAANNNNTTC | 2 cut(s) | 819, 1496 |
| MspA1I | CMGCKG | 1 cut(s) | 2516 |
| MspCI | CTTAAG | 2 cut(s) | 95, 2294 |
| MspI | CCGG | 1 cut(s) | 881 |
| MspR9I | CCNGG | 2 cut(s) | 602, 2002 |
| MunI | CAATTG | 1 cut(s) | 190 |
| Mva1269I | GAATGC | 1 cut(s) | 178 |
| MvaI | CCWGG | 2 cut(s) | 602, 2002 |
| MvnI | CGCG | 2 cut(s) | 667, 2516 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 116, 146, 155, 192, 915, 1244, 1922, 2064 |
| NcoI | CCATGG | 1 cut(s) | 1478 |
| NdeII | GATC | 8 cut(s) | 383, 597, 1735, 1776, 2012, 2199, 2334, 2524 |
| NheI | GCTAGC | 1 cut(s) | 176 |
| NlaIV | GGNNCC | 4 cut(s) | 537, 1271, 1999, 2024 |
| NmuCI | GTSAC | 4 cut(s) | 1231, 1988, 2075, 2408 |
| NsiI | ATGCAT | 1 cut(s) | 121 |
| NspI | RCATGY | 5 cut(s) | 186, 1576, 1747, 1790, 2038 |
| NspV | TTCGAA | 1 cut(s) | 230 |
| PaeI | GCATGC | 1 cut(s) | 1576 |
| PaqCI | CACCTGC | 1 cut(s) | 485 |
| PceI | AGGCCT | 1 cut(s) | 1916 |
| PciI | ACATGT | 1 cut(s) | 1786 |
| PctI | GAATGC | 1 cut(s) | 178 |
| PdmI | GAANNNNTTC | 2 cut(s) | 819, 1496 |
| PfeI | GAWTC | 5 cut(s) | 431, 645, 715, 968, 1553 |
| PfoI | TCCNGGA | 1 cut(s) | 2000 |
| PkrI | GCNGC | 1 cut(s) | 1924 |
| Ple19I | CGATCG | 1 cut(s) | 1738 |
| PleI | GAGTC | 3 cut(s) | 301, 991, 2084 |
| PpsI | GAGTC | 3 cut(s) | 301, 991, 2084 |
| PscI | ACATGT | 1 cut(s) | 1786 |
| PshBI | ATTAAT | 2 cut(s) | 1098, 2475 |
| PsiI | TTATAA | 1 cut(s) | 1710 |
| Psp6I | CCWGG | 2 cut(s) | 600, 2000 |
| PspEI | GGTNACC | 1 cut(s) | 2075 |
| PspFI | CCCAGC | 1 cut(s) | 1487 |
| PspGI | CCWGG | 2 cut(s) | 600, 2000 |
| PspN4I | GGNNCC | 4 cut(s) | 537, 1271, 1999, 2024 |
| PspPI | GGNCC | 2 cut(s) | 1998, 2022 |
| PstNI | CAGNNNCTG | 1 cut(s) | 818 |
| PsuI | RGATCY | 2 cut(s) | 383, 2012 |
| PvuI | CGATCG | 1 cut(s) | 1738 |
| RsaI | GTAC | 7 cut(s) | 257, 354, 678, 1076, 1785, 1942, 2033 |
| RsaNI | GTAC | 7 cut(s) | 256, 353, 677, 1075, 1784, 1941, 2032 |
| SacII | CCGCGG | 1 cut(s) | 2517 |
| SatI | GCNGC | 1 cut(s) | 1923 |
| Sau3AI | GATC | 8 cut(s) | 383, 597, 1735, 1776, 2012, 2199, 2334, 2524 |
| Sau96I | GGNCC | 2 cut(s) | 1998, 2022 |
| SchI | GAGTC | 3 cut(s) | 301, 991, 2084 |
| ScrFI | CCNGG | 2 cut(s) | 602, 2002 |
| SduI | GDGCHC | 3 cut(s) | 1203, 1272, 1855 |
| SfaNI | GCATC | 5 cut(s) | 374, 449, 1175, 1331, 1343 |
| SfcI | CTRYAG | 1 cut(s) | 1534 |
| Sfr303I | CCGCGG | 1 cut(s) | 2517 |
| SfuI | TTCGAA | 1 cut(s) | 230 |
| SgrBI | CCGCGG | 1 cut(s) | 2517 |
| SinI | GGWCC | 1 cut(s) | 1998 |
| SmlI | CTYRAG | 4 cut(s) | 95, 309, 379, 2294 |
| SmoI | CTYRAG | 4 cut(s) | 95, 309, 379, 2294 |
| SpeI | ACTAGT | 1 cut(s) | 1927 |
| SphI | GCATGC | 1 cut(s) | 1576 |
| SseBI | AGGCCT | 1 cut(s) | 1916 |
| SsiI | CCGC | 7 cut(s) | 444, 923, 1265, 1757, 1842, 2514, 2516 |
| SspI | AATATT | 4 cut(s) | 418, 529, 551, 1675 |
| SspMI | CTAG | 9 cut(s) | 177, 212, 488, 939, 1163, 1395, 1580, 1781, 1928 |
| StuI | AGGCCT | 1 cut(s) | 1916 |
| StyD4I | CCNGG | 2 cut(s) | 600, 2000 |
| StyI | CCWWGG | 1 cut(s) | 1478 |
| TaaI | ACNGT | 8 cut(s) | 72, 343, 352, 763, 958, 1081, 2081, 2445 |
| TaqI | TCGA | 7 cut(s) | 230, 757, 966, 1715, 1734, 1738, 2310 |
| TaqII | GACCGA | 1 cut(s) | 1102 |
| TatI | WGTACW | 5 cut(s) | 255, 1074, 1783, 1940, 2031 |
| TfiI | GAWTC | 5 cut(s) | 431, 645, 715, 968, 1553 |
| TscAI | CASTG | 8 cut(s) | 433, 768, 963, 1084, 1203, 1999, 2356, 2413 |
| TseFI | GTSAC | 4 cut(s) | 1231, 1988, 2075, 2408 |
| TseI | GCWGC | 1 cut(s) | 1922 |
| Tsp45I | GTSAC | 4 cut(s) | 1231, 1988, 2075, 2408 |
| TspDTI | ATGAA | 6 cut(s) | 9, 707, 1446, 1792, 2115, 2498 |
| TspRI | CASTG | 8 cut(s) | 433, 768, 963, 1084, 1203, 1999, 2356, 2413 |
| Vha464I | CTTAAG | 2 cut(s) | 95, 2294 |
| VpaK11BI | GGWCC | 1 cut(s) | 1998 |
| VspI | ATTAAT | 2 cut(s) | 1098, 2475 |
| XapI | RAATTY | 9 cut(s) | 661, 840, 911, 973, 1433, 1560, 1729, 1959, 2519 |
| XbaI | TCTAGA | 1 cut(s) | 1394 |
| XceI | RCATGY | 5 cut(s) | 186, 1576, 1747, 1790, 2038 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2138 |
| XmnI | GAANNNNTTC | 2 cut(s) | 819, 1496 |
| XspI | CTAG | 9 cut(s) | 177, 212, 488, 939, 1163, 1395, 1580, 1781, 1928 |
| Zsp2I | ATGCAT | 1 cut(s) | 121 |