Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0016339

Physical Location & Seq

Genomic Coordinates Forward (+)

21510524 .. 21511275

Gene Structure 752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATTATTGTACCGAGGGGAACATTGAAGTGCCAAAGCGTGGAGGTAGGAAGATTAATTAGAAGAGAAATGGCGAGTTCTCATGAGCTTACAAGAAATGGCCATAAGGATGTTTCACTTCAAGAACTCAGTGATAGGCTTGCTGAGTTTGCTCAAGTAAGAGGATGGGAAGAATATCACAGCCCCAGAAATCTCCTTCTAGCACTAGTGGGAGAGGTTGGAGAACTGTCTGAAATTTTCCAGTGGAAGGGTGAAGTTGCAAGAGGGCTGCCTAACTGGACTTCTGATGAGAAAGAGCATTTGGAAGAGGAGCTCTCTGATGTTCTGCTCTACCTGATTCAACTCGCCGACGTCTGTGGACTTGATCTGGGACAAGCAGCTCTCACCAAGATTGTCAAGAATGCAAGAAAATACCCCGTTACGAATAAAACAACAGCTTCCACCACCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

MazG-like

Protein Analysis

151

Amino Acids

16.87

Weight (kDa)

5.6

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MazG	PF03819	61 - 139	1.9e-07	MazG nucleotide pyrophosphohydrolase domain
MazG-like	PF12643	72 - 145	1.2e-09	MazG-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016339)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14400
malus_domestica	MD06G1198900.v1.1 MD14G1206300.v1.1
prunus_persica	Prupe.5G199700_v2.0.a1 Prupe.5G202000_v2.0.a1
pyrus_communis	pycom06g17580
rosa_chinensis	RchiOBHm_Chr7g0182261
rosa_multiflora	Rmu_sc0000003.1_g000009
rosa_roxburghii	Rroxscaffold_3G00271370
rosa_rugosa	Rorug06G0446500
rosa_samantha	Rh7AG049600 Rh7BG049700 Rh7CG051000 Rh7DG048900
rosa_wichuraiana	Rw7G004070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	40, 247
AgsI	TTSAA	3 cut(s)	28, 122, 341
AhlI	ACTAGT	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	4 cut(s)	88, 313, 380, 437
AluI	AGCT	4 cut(s)	88, 313, 380, 437
Alw21I	GWGCWC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	268, 377
ApoI	RAATTY	1 cut(s)	234
AseI	ATTAAT	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	263, 376
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	255, 389
BccI	CCATC	1 cut(s)	159
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	3 cut(s)	200, 206, 451
BisI	GCNGC	2 cut(s)	269, 378
BlsI	GCNGC	2 cut(s)	270, 379
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpuEI	CTTGAG	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 247
Bse1I	ACTGG	2 cut(s)	241, 281
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	2 cut(s)	115, 170
BseLI	CCNNNNNNNGG	2 cut(s)	40, 247
BseMII	CTCAG	2 cut(s)	135, 142
BseNI	ACTGG	2 cut(s)	241, 281
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	255, 389
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	40, 247
BsmFI	GGGAC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	364
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	136, 141
BspHI	TCATGA	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	241, 281
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	2 cut(s)	58, 300
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	128, 144
BstF5I	GGATG	2 cut(s)	115, 170
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	255, 389
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	115, 170
BtsIMutI	CAGTG	2 cut(s)	136, 248
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	8 cut(s)	88, 102, 139, 183, 268, 313, 380, 437
CviKI_1	RGCY	8 cut(s)	88, 102, 139, 183, 268, 313, 380, 437
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	128, 144
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	58, 300
EarI	CTCTTC	2 cut(s)	58, 300
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	1 cut(s)	86
FaiI	YATR	2 cut(s)	84, 105
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	269, 378
FokI	GGATG	2 cut(s)	122, 177
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	269, 378
FspBI	CTAG	3 cut(s)	200, 206, 451
GluI	GCNGC	2 cut(s)	269, 378
HaeIII	GGCC	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	1 cut(s)	337
HphI	GGTGA	2 cut(s)	263, 376
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	232, 286, 319
Hpy188III	TCNNGA	3 cut(s)	83, 122, 397
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	206, 241
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	260, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	128, 144
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	5 cut(s)	199, 254, 262, 347, 353
Lsp1109I	GCAGC	2 cut(s)	255, 389
MaeI	CTAG	3 cut(s)	200, 206, 451
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	4 cut(s)	63, 75, 182, 317
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	2 cut(s)	57, 234
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	9, 37, 155, 208, 257, 301
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	2 cut(s)	28, 108
Msp20I	TGGCCA	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	406
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	82
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	270, 379
PshBI	ATTAAT	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	315
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	2 cut(s)	28, 108
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	2 cut(s)	269, 378
Sau3AI	GATC	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	8 cut(s)	48, 90, 219, 315, 336, 354, 382, 439
SmiMI	CAYNNNNRTG	2 cut(s)	28, 108
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	2 cut(s)	57, 234
SspMI	CTAG	3 cut(s)	200, 206, 451
SstI	GAGCTC	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	354
TasI	AATT	2 cut(s)	57, 234
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	2 cut(s)	136, 248
TseI	GCWGC	2 cut(s)	268, 377
TspRI	CASTG	2 cut(s)	136, 248
Van91I	CCANNNNNTGG	1 cut(s)	40
VspI	ATTAAT	1 cut(s)	56
XapI	RAATTY	1 cut(s)	234
XspI	CTAG	3 cut(s)	200, 206, 451
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.