Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012253

Physical Location & Seq

Genomic Coordinates Reverse (-)

23428763 .. 23430993

Gene Structure 2231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20340.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCAAATATGTGGGCCACTGGAGGCATCCGATGAGGAGATTGAGATATGCAAATCAATTAGGAATGAATTACAGGCAGCTGTCAGCTCTCTATTGAAGGATGATGGAATTTTGGTTATCCCAACTATAGCTGACCCCCCTTCGAAACTTGGCGGGAAGGAGATGCTCTCTGAGGACTTCCGCAGTCGTGCTTTTGGTCTGTTAAGTATTGCGAGCCTGTCAGGTTGTTGTCAGGTCACAGTACCTCTGGGCTTTCATGACAAGTGTCCTGTTTCAATTTCTTTCATAGCCAGGCATGGGGGTGATCGCTTTTTACTGGATGCACTGCACACTATGTATATATCTTTACAGGAGCAGGCTGATATTGCTTCAAAATCCAAATCATCCAAAAATGCTCTCACCAAGGAACAATGTGCTGAAATTGCCAAGGAAAAGGGAAATCAAGCATACAAAGATAAGGACTGGCAGAAGGCTATTGGCTTTTATTCTGAAGCTATCAAACTTAGTGGCAACAATGCAACGTATTACAGTAACAGGGCTCAAGCATATCTTGAAGTTGGAAGATTCATTCAAGCCGAGGCAGATTGTACTAAAGCTATCAACCTTGACAAAAAGAATGTGAAAGCTTATTTCCGAAGAGGCACTGCAAGGGAGAAGCTTGGTTATTATAAGGAGGCGATTGAAGACTTTAGACATGCACTTGTTCTTGAGCCAACCAACAAACGAGCAGCCGCTGCTGCTGAGAAATTGAGGAAGCTGTTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00330 ko00360 ko00380 ko00627 ko00643 ko01120 map00330 map00360 map00380 map00627 map00643 map01120

Pfam Domains

Protein Families

Amidase TPR_11 TPR_16 TPR_2 TPR_8

Protein Analysis

256

Amino Acids

28.25

Weight (kDa)

8.56

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17970 AT3G17970
fragaria_vesca	FvH4_5g17380
malus_domestica	MD06G1227100.v1.1 MD14G1236500.v1.1
prunus_persica	Prupe.5G233600_v2.0.a1
pyrus_communis	pycom06g20340 pycom14g19750
rosa_chinensis	RchiOBHm_Chr7g0178361
rosa_laevigata	RLG00000005452
rosa_roxburghii	Rroxscaffold_3G00274980
rosa_rugosa	Rorug06G0416300 Rorug06G0416400
rosa_samantha	Rh7AG015100 Rh7BG014600 Rh7CG014600 Rh7DG014900
rosa_wichuraiana	Rw0G010200 Rw7G001200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AciI	CCGC	3 cut(s)	153, 181, 732
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	2 cut(s)	243, 589
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	6 cut(s)	97, 276, 372, 554, 572, 683
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	8 cut(s)	80, 87, 131, 494, 596, 626, 658, 757
AluI	AGCT	8 cut(s)	80, 87, 131, 494, 596, 626, 658, 757
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	4 cut(s)	77, 728, 734, 737
ApoI	RAATTY	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	758
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	314, 391
AsuII	TTCGAA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	690
BbvI	GCAGC	4 cut(s)	89, 721, 724, 740
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	292
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	5 cut(s)	78, 729, 732, 735, 738
BlsI	GCNGC	5 cut(s)	79, 730, 733, 736, 739
Bme1390I	CCNGG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	3 cut(s)	35, 153, 310
BoxI	GACNNNNGTC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	690
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	525, 728
BsaJI	CCNNGG	3 cut(s)	402, 426, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	4 cut(s)	24, 321, 467, 763
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	3 cut(s)	402, 426, 576
BseGI	GGATG	4 cut(s)	26, 106, 325, 383
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	162, 732
BseNI	ACTGG	4 cut(s)	24, 321, 467, 763
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	4 cut(s)	89, 721, 724, 740
BsgI	GTGCAG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	297
BsnI	GGCC	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	3 cut(s)	153, 181, 732
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	2 cut(s)	163, 733
BspHI	TCATGA	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	143
BsrI	ACTGG	4 cut(s)	24, 321, 467, 763
BssECI	CCNNGG	3 cut(s)	402, 426, 576
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	2 cut(s)	402, 426
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	241, 530
Bst6I	CTCTTC	1 cut(s)	631
BstAPI	GCANNNNNTGC	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	214, 357
BstDEI	CTNAG	3 cut(s)	171, 503, 741
BstF5I	GGATG	4 cut(s)	26, 106, 325, 383
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 422, 734, 737
BstNI	CCWGG	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	698
BstPAI	GACNNNNGTC	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	4 cut(s)	89, 721, 724, 740
BstV2I	GAAGAC	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	26, 106, 325, 383
BtsI	GCAGTG	2 cut(s)	323, 642
BtsIMutI	CAGTG	3 cut(s)	17, 323, 642
Cac8I	GCNNGC	2 cut(s)	214, 357
CaiI	CAGNNNCTG	1 cut(s)	734
CciI	TCATGA	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	242, 588
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	3 cut(s)	257, 296, 695
CviQI	GTAC	2 cut(s)	242, 588
DdeI	CTNAG	3 cut(s)	171, 503, 741
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	631
EarI	CTCTTC	1 cut(s)	631
Eco130I	CCWWGG	2 cut(s)	402, 426
Eco24I	GRGCYC	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	290
EcoT14I	CCWWGG	2 cut(s)	402, 426
EcoT38I	GRGCYC	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	402, 426
FaeI	CATG	3 cut(s)	260, 299, 698
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FatI	CATG	3 cut(s)	256, 295, 694
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	5 cut(s)	78, 729, 732, 735, 738
FokI	GGATG	4 cut(s)	13, 113, 332, 370
FriOI	GRGCYC	1 cut(s)	541
Fsp4HI	GCNGC	5 cut(s)	78, 729, 732, 735, 738
GluI	GCNGC	5 cut(s)	78, 729, 732, 735, 738
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	16
Hin1II	CATG	3 cut(s)	260, 299, 698
HindIII	AAGCTT	2 cut(s)	624, 656
HinfI	GANTC	1 cut(s)	564
HphI	GGTGA	2 cut(s)	314, 391
Hpy188I	TCNGA	4 cut(s)	31, 172, 490, 635
Hpy188III	TCNNGA	3 cut(s)	257, 551, 707
HpyAV	CCTTC	4 cut(s)	91, 150, 151, 463
HpyCH4III	ACNGT	2 cut(s)	241, 530
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	7 cut(s)	4, 51, 323, 328, 518, 647, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 422, 734, 737
HpyF3I	CTNAG	3 cut(s)	171, 503, 741
HpySE526I	ACGT	1 cut(s)	521
Hsp92II	CATG	3 cut(s)	260, 299, 698
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	4 cut(s)	89, 721, 724, 740
LweI	GCATC	3 cut(s)	35, 153, 310
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	2 cut(s)	235, 530
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	3 cut(s)	573, 648, 695
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	6 cut(s)	57, 68, 108, 276, 420, 746
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	8 cut(s)	16, 28, 166, 255, 571, 632, 667, 744
MroXI	GAANNNNTTC	1 cut(s)	758
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	80, 734
MspR9I	CCNGG	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	4 cut(s)	365, 422, 734, 737
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	260, 299, 698
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	698
NspV	TTCGAA	1 cut(s)	143
PagI	TCATGA	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	1 cut(s)	564
PkrI	GCNGC	5 cut(s)	79, 730, 733, 736, 739
PshAI	GACNNNNGTC	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	734
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	2 cut(s)	243, 589
RsaNI	GTAC	2 cut(s)	242, 588
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	5 cut(s)	78, 729, 732, 735, 738
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	3 cut(s)	35, 153, 310
SfcI	CTRYAG	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	540, 707
SmoI	CTYRAG	2 cut(s)	540, 707
Sse9I	AATT	6 cut(s)	57, 68, 108, 276, 420, 746
SsiI	CCGC	3 cut(s)	153, 181, 732
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	2 cut(s)	402, 426
TaaI	ACNGT	2 cut(s)	241, 530
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	1 cut(s)	143
TasI	AATT	6 cut(s)	57, 68, 108, 276, 420, 746
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	1 cut(s)	564
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	3 cut(s)	24, 330, 649
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	4 cut(s)	77, 728, 734, 737
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	81, 245, 274, 556
TspRI	CASTG	3 cut(s)	24, 330, 649
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	698
XmnI	GAANNNNTTC	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.