Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0019820

Physical Location & Seq

Genomic Coordinates Forward (+)

23494149 .. 23494903

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGAAGATGGGGCGGAATGTCATCAACAGAAGCCTCGAGAGTCTGTTGGACATGGACCAATCAGTTGCTACGAAAGTCTCTGGCCCTCCTCGACCCACGAAGATGATTCCAGGCCATGGACTTGAGTTCAATAACCTTTCGTATAGTGTAATGAAGAAGCTGAAAAAAGACGGGGTTTGGATCGAGAAAGAAGCGTATCTTCTCAATGACATCTCTGGCCAGGCAGTGAGGGGTGAGATCATGGCCATCATGGGACCTAGTGGTGCTGGGAAATCCACATTTCTTGATGCCTTGGCGGGACGGATTGCACAAGGGAGTTTGGAAGGCTCTGTTAGAATTGATGGAAGAACGGTTAGAGATCTATATAAGTTTTTCTCTGTGCAGGGCGTCCAGTCTTTCTTATATTTTCGGAAACTAAAGGACAATGATTGCATATATAAAGTGGATTCATATTTTCAGGTTACTACAAGCTACATGAAGATGGTGTCGTCTTACGTGATGCAGGACGACCAGCTCTTTCCTATGCTGACTGTTTTCGAGACGTTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCCTCCATTTCGAGGAATGAAAAGAGAAAGAGAGTCTATGAACTCCTTGAACAACTCGGCTTGCAGTGCAACACATACTTACATTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0042891 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070013 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

223

Amino Acids

25.27

Weight (kDa)

9.33

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	69 - 214	1.4e-14	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019820)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g20490
rosa_roxburghii	Rroxscaffold_3G00275160
rosa_samantha	Rh3AG308900 Rh3BG344900 Rh3CG342300 Rh7AG013100 Rh7BG013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	119
AciI	CCGC	2 cut(s)	16, 299
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	220, 246
AcyI	GRCGYC	1 cut(s)	390
AfiI	CCNNNNNNNGG	2 cut(s)	119, 588
AgsI	TTSAA	2 cut(s)	133, 626
AjnI	CCWGG	2 cut(s)	112, 222
AluBI	AGCT	4 cut(s)	163, 474, 517, 560
AluI	AGCT	4 cut(s)	163, 474, 517, 560
Alw26I	GTCTC	2 cut(s)	85, 536
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	4 cut(s)	85, 115, 220, 246
ApeKI	GCWGC	1 cut(s)	557
AspS9I	GGNCC	3 cut(s)	58, 86, 257
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	2 cut(s)	58, 257
BalI	TGGCCA	2 cut(s)	222, 248
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	4 cut(s)	4, 257, 338, 478
BciT130I	CCWGG	2 cut(s)	114, 224
BcoDI	GTCTC	2 cut(s)	85, 536
BfaI	CTAG	1 cut(s)	261
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	559
Bme1390I	CCNGG	2 cut(s)	114, 224
Bme18I	GGWCC	2 cut(s)	58, 257
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	3 cut(s)	58, 86, 257
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	2 cut(s)	114, 224
BmsI	GCATC	2 cut(s)	280, 492
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	499
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	118, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 588
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	114, 224
BseDI	CCNNGG	2 cut(s)	118, 294
BseLI	CCNNNNNNNGG	2 cut(s)	119, 588
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	569
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	4 cut(s)	87, 117, 222, 248
BsiHKCI	CYCGRG	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	270, 315
BslI	CCNNNNNNNGG	2 cut(s)	119, 588
BsmAI	GTCTC	2 cut(s)	85, 536
BsmBI	CGTCTC	1 cut(s)	536
BsmFI	GGGAC	2 cut(s)	270, 315
BsnI	GGCC	4 cut(s)	87, 117, 222, 248
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	183, 240, 361
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	2 cut(s)	16, 299
BspANI	GGCC	4 cut(s)	87, 117, 222, 248
BspCNI	CTCAG	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	118, 294
BssMI	GATC	3 cut(s)	183, 240, 361
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	118, 294
Bst2UI	CCWGG	2 cut(s)	114, 224
Bst4CI	ACNGT	2 cut(s)	355, 535
BstACI	GRCGYC	1 cut(s)	390
BstBAI	YACGTR	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	186, 243, 364
BstMAI	GTCTC	2 cut(s)	85, 536
BstMBI	GATC	3 cut(s)	183, 240, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	642
BstNI	CCWGG	2 cut(s)	114, 224
BstSCI	CCNGG	2 cut(s)	112, 222
BstV1I	GCAGC	1 cut(s)	569
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	87, 117, 222, 248
BtgI	CCRYGG	1 cut(s)	118
BtsI	GCAGTG	2 cut(s)	234, 647
BtsIMutI	CAGTG	2 cut(s)	234, 647
Cac8I	GCNNGC	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	58, 86, 257
CseI	GACGC	1 cut(s)	379
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	6 cut(s)	55, 119, 244, 253, 478, 550
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	3 cut(s)	185, 242, 363
DpnII	GATC	3 cut(s)	183, 240, 361
EaeI	YGGCCR	2 cut(s)	220, 246
EciI	GGCGGA	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	118, 294
Eco47I	GGWCC	2 cut(s)	58, 257
Eco88I	CYCGRG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	112, 222
EcoT14I	CCWWGG	2 cut(s)	118, 294
ErhI	CCWWGG	2 cut(s)	118, 294
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	6 cut(s)	58, 122, 247, 256, 481, 553
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	2 cut(s)	270, 315
FatI	CATG	6 cut(s)	54, 118, 243, 252, 477, 549
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	558
Fsp4HI	GCNGC	1 cut(s)	558
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	1 cut(s)	558
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	87, 117, 222, 248
HgaI	GACGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	6 cut(s)	58, 122, 247, 256, 481, 553
HinfI	GANTC	4 cut(s)	43, 109, 449, 609
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	4 cut(s)	40, 187, 287, 541
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	355, 535
HpyCH4IV	ACGT	2 cut(s)	498, 545
HpyCH4V	TGCA	7 cut(s)	311, 385, 435, 505, 557, 640, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	642
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	2 cut(s)	498, 545
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	6 cut(s)	58, 122, 247, 256, 481, 553
Kzo9I	GATC	3 cut(s)	183, 240, 361
Lsp1109I	GCAGC	1 cut(s)	569
LweI	GCATC	2 cut(s)	280, 492
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	498, 545
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	3 cut(s)	185, 242, 363
MboI	GATC	3 cut(s)	183, 240, 361
MboII	GAAGA	6 cut(s)	19, 115, 169, 194, 360, 493
MflI	RGATCY	1 cut(s)	361
MlsI	TGGCCA	2 cut(s)	222, 248
MluCI	AATT	1 cut(s)	339
MluNI	TGGCCA	2 cut(s)	222, 248
MlyI	GAGTC	2 cut(s)	52, 618
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	8 cut(s)	47, 99, 102, 225, 556, 582, 585, 589
Mox20I	TGGCCA	2 cut(s)	222, 248
MscI	TGGCCA	2 cut(s)	222, 248
MslI	CAYNNNNRTG	2 cut(s)	104, 482
Msp20I	TGGCCA	2 cut(s)	222, 248
MspA1I	CMGCKG	1 cut(s)	560
MspR9I	CCNGG	2 cut(s)	114, 224
MvaI	CCWGG	2 cut(s)	114, 224
MwoI	GCNNNNNNNGC	1 cut(s)	642
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	3 cut(s)	183, 240, 361
NlaIII	CATG	6 cut(s)	58, 122, 247, 256, 481, 553
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	612
PaeR7I	CTCGAG	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	109, 449
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	559
PleI	GAGTC	2 cut(s)	51, 617
PpsI	GAGTC	2 cut(s)	51, 617
Ppu21I	YACGTR	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	112, 222
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	112, 222
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	3 cut(s)	58, 86, 257
PspPPI	RGGWCCY	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	560
RseI	CAYNNNNRTG	2 cut(s)	104, 482
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	3 cut(s)	183, 240, 361
Sau96I	GGNCC	3 cut(s)	58, 86, 257
SchI	GAGTC	2 cut(s)	52, 618
ScrFI	CCNGG	2 cut(s)	114, 224
SfaNI	GCATC	2 cut(s)	280, 492
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	58, 257
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	2 cut(s)	104, 482
SmlI	CTYRAG	2 cut(s)	38, 125
SmoI	CTYRAG	2 cut(s)	38, 125
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	2 cut(s)	16, 299
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	112, 222
StyI	CCWWGG	2 cut(s)	118, 294
TaaI	ACNGT	2 cut(s)	355, 535
TaiI	ACGT	2 cut(s)	501, 548
TaqI	TCGA	5 cut(s)	39, 94, 186, 540, 587
TasI	AATT	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	109, 449
TscAI	CASTG	2 cut(s)	234, 647
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	6 cut(s)	170, 441, 494, 538, 609, 630
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	2 cut(s)	234, 647
Van91I	CCANNNNNTGG	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	58, 257
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.