Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0019820

Physical Location & Seq

Genomic Coordinates Forward (+)

38683934 .. 38685481

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG342300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGCATCATGGCAATGTCAAAGGCAAAGATAGGGCGGAATGAAACAAAGAAAAGCCTTGAGAGTTTATTGGACATGGACAAAATAGTAGCTGCAAAGATTTCTGTTCCACTTCAATTGTCGAAGATGATTCCAGGCCAAGGCCTTGAATTCAACAACCTTTCCTACAGTGTAACAAAACAAATAAAGAAAGATGGGGTTTGGATCAAGAAGGAAGCTTATCTTCTTAATGACATCTCTGGTCATGCAGTACAAGGTGAGATTATGGCCATTATGGGGCCTAGTGGTGCTGGAAAATCCACATTTCTCGATGCCTTAGCAGGAAGGATTGCTCAAGGAAGTCTTGAAGGCTCTGTTAGAGTCGATGGAAAAACTGTTACTACAAGCTACATGAAGATGGTTTCCTCTTATGTGATGCAAGATGACCAACTATTCCCAATGTTGACCGTGTTTGAGACTTTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCTCTTTCCAAAGATGAGAAGAGAAAGAGAGTCTATGAGCTCCTTGACCAACTCGGCTTGCAGACTGCAACACATACATATATTGGTGATGAGGGGAGGAGAGGAGTCTCAGGAGGTGAAAGACGCAGGGTATCAATCGGAATTGATATCATCCACAAACCTTCTCTACTGTTTCTTGATGAACCAACTTCTGGTCTTGACTCCACGAGTGCTTATAGTGTTGTAGAGAAGGTGAAAGAAATAGCTCGGGGCGGTAGCATTGTGCTCATGACTATCCATCAGCCTTCCTATCGTATTCAAAATCTCTTGGACCGCATGACAGTCCTAGCAAGAGGAAAACTAATATATTTGGGAAGTCCACATGGTTTGTCTGCTCACCTTTCTGGATTTGGAAGGCCAGTTCCTGATGGAGAAAACAACCTTGAGTATCTCCTGGATGTGATTAGAGAATTTGATGAGTCAAATGTAGGACTAGAACCGCTTGTTGTCTACCTTCGCGATGGAATCAAACCTGATCAGGTGTCAAGAACCCCAATTGCAAGAACACCAAAGACACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0042891 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070013 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

350

Amino Acids

38.49

Weight (kDa)

8.97

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	76 - 228	1.2e-29	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019820)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g20490
rosa_roxburghii	Rroxscaffold_3G00275160
rosa_samantha	Rh3AG308900 Rh3BG344900 Rh3CG342300 Rh7AG013100 Rh7BG013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	981
AccII	CGCG	1 cut(s)	990
AciI	CCGC	4 cut(s)	37, 744, 805, 971
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	149, 941
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	140, 276, 683
AgsI	TTSAA	5 cut(s)	116, 149, 154, 347, 791
AjnI	CCWGG	2 cut(s)	133, 924
AloI	GAACNNNNNNTCC	2 cut(s)	876, 908
AluBI	AGCT	6 cut(s)	92, 218, 387, 473, 532, 737
AluI	AGCT	6 cut(s)	92, 218, 387, 473, 532, 737
Alw21I	GWGCWC	2 cut(s)	534, 759
Alw26I	GTCTC	2 cut(s)	449, 604
AlwI	GGATC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	896
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	5 cut(s)	136, 142, 267, 278, 887
ApeKI	GCWGC	2 cut(s)	92, 470
ApoI	RAATTY	2 cut(s)	149, 941
AspS9I	GGNCC	2 cut(s)	278, 802
AsuHPI	GGTGA	5 cut(s)	269, 590, 620, 736, 860
AvaI	CYCGRG	1 cut(s)	738
AvaII	GGWCC	1 cut(s)	802
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	697
Bbv12I	GWGCWC	2 cut(s)	534, 759
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	79, 482
BccI	CCATC	6 cut(s)	188, 359, 391, 777, 893, 986
BciT130I	CCWGG	2 cut(s)	135, 926
BclI	TGATCA	1 cut(s)	1006
BcoDI	GTCTC	2 cut(s)	449, 604
BfaI	CTAG	3 cut(s)	282, 818, 965
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	93, 471
BlsI	GCNGC	2 cut(s)	94, 472
Bme1390I	CCNGG	2 cut(s)	135, 926
Bme18I	GGWCC	1 cut(s)	802
BmeT110I	CYCGRG	1 cut(s)	738
BmgT120I	GGNCC	2 cut(s)	278, 802
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	135, 926
BmsI	GCATC	3 cut(s)	15, 301, 405
Bpu10I	CCTNAGC	2 cut(s)	316, 474
BpuEI	CTTGAG	3 cut(s)	80, 318, 935
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 276, 683
Bse1I	ACTGG	1 cut(s)	890
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	135, 926
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	642, 934
BseLI	CCNNNNNNNGG	3 cut(s)	140, 276, 683
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	465, 615
BseNI	ACTGG	1 cut(s)	890
BseRI	GAGGAG	2 cut(s)	604, 609
BseXI	GCAGC	2 cut(s)	79, 482
Bsh1236I	CGCG	1 cut(s)	990
BshFI	GGCC	5 cut(s)	138, 144, 269, 280, 889
BsiHKAI	GWGCWC	2 cut(s)	534, 759
BsiHKCI	CYCGRG	1 cut(s)	738
BslI	CCNNNNNNNGG	3 cut(s)	140, 276, 683
BsmAI	GTCTC	2 cut(s)	449, 604
BsnI	GGCC	5 cut(s)	138, 144, 269, 280, 889
BsoBI	CYCGRG	1 cut(s)	738
Bsp1286I	GDGCHC	2 cut(s)	534, 759
Bsp143I	GATC	2 cut(s)	204, 1006
Bsp68I	TCGCGA	1 cut(s)	990
BspACI	CCGC	4 cut(s)	37, 744, 805, 971
BspANI	GGCC	5 cut(s)	138, 144, 269, 280, 889
BspCNI	CTCAG	2 cut(s)	466, 614
BspFNI	CGCG	1 cut(s)	990
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	890
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	204, 1006
BssSI	CACGAG	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	139
Bst2BI	CACGAG	1 cut(s)	697
Bst2UI	CCWGG	2 cut(s)	135, 926
Bst4CI	ACNGT	5 cut(s)	170, 376, 448, 663, 814
Bst6I	CTCTTC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	3 cut(s)	316, 474, 601
BstF5I	GGATG	2 cut(s)	642, 934
BstFNI	CGCG	1 cut(s)	990
BstKTI	GATC	2 cut(s)	207, 1009
BstMAI	GTCTC	2 cut(s)	449, 604
BstMBI	GATC	2 cut(s)	204, 1006
BstNI	CCWGG	2 cut(s)	135, 926
BstSCI	CCNGG	2 cut(s)	133, 924
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	990
BstV1I	GCAGC	2 cut(s)	79, 482
BsuRI	GGCC	5 cut(s)	138, 144, 269, 280, 889
BtgZI	GCGATG	1 cut(s)	1005
BtsCI	GGATG	2 cut(s)	642, 934
BtsIMutI	CAGTG	1 cut(s)	175
BtuMI	TCGCGA	1 cut(s)	990
Cac8I	GCNNGC	1 cut(s)	551
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	1 cut(s)	759
Cfr13I	GGNCC	2 cut(s)	278, 802
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	251
CspCI	CAANNNNNGTGG	4 cut(s)	99, 134, 840, 875
CviAII	CATG	9 cut(s)	10, 76, 245, 391, 463, 760, 808, 854, 1050
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	3 cut(s)	316, 474, 601
DpnI	GATC	2 cut(s)	206, 1008
DpnII	GATC	2 cut(s)	204, 1006
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	802
Eco53kI	GAGCTC	1 cut(s)	532
Eco88I	CYCGRG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	133, 924
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	9 cut(s)	13, 79, 248, 394, 466, 763, 811, 857, 1053
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 327, 359
FatI	CATG	9 cut(s)	9, 75, 244, 390, 462, 759, 807, 853, 1049
FbaI	TGATCA	1 cut(s)	1006
FblI	GTMKAC	1 cut(s)	981
Fnu4HI	GCNGC	2 cut(s)	93, 471
FokI	GGATG	2 cut(s)	629, 941
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	2 cut(s)	93, 471
FspBI	CTAG	3 cut(s)	282, 818, 965
GluI	GCNGC	2 cut(s)	93, 471
HaeIII	GGCC	5 cut(s)	138, 144, 269, 280, 889
HgaI	GACGC	1 cut(s)	624
Hin1II	CATG	9 cut(s)	13, 79, 248, 394, 466, 763, 811, 857, 1053
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	7 cut(s)	130, 360, 522, 597, 692, 950, 996
HphI	GGTGA	5 cut(s)	269, 590, 620, 736, 860
Hpy166II	GTNNAC	3 cut(s)	444, 851, 982
Hpy188I	TCNGA	1 cut(s)	632
Hpy8I	GTNNAC	3 cut(s)	444, 851, 982
HpyAV	CCTTC	9 cut(s)	205, 318, 341, 501, 663, 715, 786, 879, 995
HpyCH4III	ACNGT	5 cut(s)	170, 376, 448, 663, 814
HpyCH4V	TGCA	7 cut(s)	95, 248, 418, 470, 553, 560, 1031
HpyF3I	CTNAG	3 cut(s)	316, 474, 601
Hsp92II	CATG	9 cut(s)	13, 79, 248, 394, 466, 763, 811, 857, 1053
Ksp22I	TGATCA	1 cut(s)	1006
Kzo9I	GATC	2 cut(s)	204, 1006
LmnI	GCTCC	1 cut(s)	537
Lsp1109I	GCAGC	2 cut(s)	79, 482
LweI	GCATC	3 cut(s)	15, 301, 405
MaeI	CTAG	3 cut(s)	282, 818, 965
MaeIII	GTNAC	2 cut(s)	172, 376
MalI	GATC	2 cut(s)	206, 1008
MboI	GATC	2 cut(s)	204, 1006
MboII	GAAGA	4 cut(s)	136, 215, 406, 523
MfeI	CAATTG	2 cut(s)	116, 1026
MhlI	GDGCHC	2 cut(s)	534, 759
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	5 cut(s)	116, 149, 633, 941, 1026
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	5 cut(s)	369, 531, 606, 686, 959
MnlI	CCTC	8 cut(s)	415, 469, 498, 577, 582, 587, 599, 818
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	14, 395
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	135, 926
MunI	CAATTG	2 cut(s)	116, 1026
MvaI	CCWGG	2 cut(s)	135, 926
MvnI	CGCG	1 cut(s)	990
NdeII	GATC	2 cut(s)	204, 1006
NlaIII	CATG	9 cut(s)	13, 79, 248, 394, 466, 763, 811, 857, 1053
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	525
NruI	TCGCGA	1 cut(s)	990
PagI	TCATGA	1 cut(s)	759
PceI	AGGCCT	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	130, 996
PflMI	CCANNNNNTGG	1 cut(s)	683
PfoI	TCCNGGA	1 cut(s)	924
PkrI	GCNGC	2 cut(s)	94, 472
PleI	GAGTC	5 cut(s)	368, 530, 605, 686, 958
PpsI	GAGTC	5 cut(s)	368, 530, 605, 686, 958
Psp124BI	GAGCTC	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	133, 924
PspGI	CCWGG	2 cut(s)	133, 924
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	278, 802
PstNI	CAGNNNCTG	1 cut(s)	896
PvuII	CAGCTG	1 cut(s)	473
RruI	TCGCGA	1 cut(s)	990
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	2 cut(s)	14, 395
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	93, 471
Sau3AI	GATC	2 cut(s)	204, 1006
Sau96I	GGNCC	2 cut(s)	278, 802
SchI	GAGTC	5 cut(s)	369, 531, 606, 686, 959
ScrFI	CCNGG	2 cut(s)	135, 926
SduI	GDGCHC	2 cut(s)	534, 759
SfaNI	GCATC	3 cut(s)	15, 301, 405
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	802
SmiMI	CAYNNNNRTG	2 cut(s)	14, 395
SmlI	CTYRAG	3 cut(s)	59, 333, 914
SmoI	CTYRAG	3 cut(s)	59, 333, 914
Sse9I	AATT	5 cut(s)	116, 149, 633, 941, 1026
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	4 cut(s)	37, 744, 805, 971
SspMI	CTAG	3 cut(s)	282, 818, 965
SstI	GAGCTC	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	133, 924
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	5 cut(s)	170, 376, 448, 663, 814
TaqI	TCGA	3 cut(s)	122, 309, 363
TasI	AATT	5 cut(s)	116, 149, 633, 941, 1026
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	130, 996
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	2 cut(s)	92, 470
TspDTI	ATGAA	4 cut(s)	57, 407, 451, 687
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	802
XapI	RAATTY	2 cut(s)	149, 941
XmiI	GTMKAC	1 cut(s)	981
XspI	CTAG	3 cut(s)	282, 818, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.