Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0019820

Physical Location & Seq

Genomic Coordinates Reverse (-)

871847 .. 872873

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG013100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCAATGGCAATGGCAAAGGCAAAGGCAGCGCGGAATGACGCAAACAGAAGCCTTGAGAGTTTATTGGACATGGACAAAATAGTGGCTGCAAAGATTTCTGTTCCACTTCAGTTGTCGAAGATGATTCCGGGCCAAGGCCTTGAGTTCAACAACCTTTCCTACAGTGTAATTAAGAAGATAAAGAAAGATGGGGTTTGGATCAAGAAGGAAGCTTATCTTCTTAATGACATATCTGGTCAGGCCGTGAAAGGTGAGGTTATGGCCATTTTGGGACCTAGTGGTGCTGGAAAATCCACATTTCTCGATGCCTTGGCAGGAAGGATTGCTCAAGGAAGTCTTGAAGGCTCTGTAAGAGTCGATGGAAAAACGGTTACTACAAGCTACATGAAGATGGTTTCCTCTTACGTGATGCAAGATGACCAGCTGTTCCCGATGTTAACTGTGTTTGAGACTTTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCTCTTTCCAAGCATGAGAAGAGAAAGAGAGTCTATGAGCTCATTGACCAGCTCGGCTTGCAAACTGCAACACATACATATATTGGTGATGAGGGGAGGAGAGGAGTCTCGGGAGGAGAAAGACGGAGGGTCTCAATTGGAATTGACATCATCCACAAACCTTCTTTGCTGTTTCTTGATGAACCAACTTCTGGTCTTGACTCTACGAGTGCTTATAGTGTTGTGGAAAAGGTGAAGGAAATAGCTCGTGGTGGTAGCATTGTGCTCATGACCATCCATCAACCTTCGTATCGTATTCAAAATCTCTTGGACCGCATGACAATCCTAGCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0042891 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070013 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

274

Amino Acids

30.08

Weight (kDa)

9.5

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	75 - 227	1.1e-29	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019820)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g20490
rosa_roxburghii	Rroxscaffold_3G00275160
rosa_samantha	Rh3AG308900 Rh3BG344900 Rh3CG342300 Rh7AG013100 Rh7BG013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	680
AccII	CGCG	1 cut(s)	34
AciI	CCGC	2 cut(s)	34, 802
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	137, 680
AgsI	TTSAA	3 cut(s)	151, 344, 788
AhdI	GACNNNNNGTC	1 cut(s)	617
AluBI	AGCT	7 cut(s)	215, 384, 427, 470, 529, 541, 734
AluI	AGCT	7 cut(s)	215, 384, 427, 470, 529, 541, 734
Alw21I	GWGCWC	2 cut(s)	531, 756
Alw26I	GTCTC	3 cut(s)	446, 601, 625
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	4 cut(s)	133, 139, 243, 264
ApeKI	GCWGC	3 cut(s)	29, 89, 467
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	3 cut(s)	133, 275, 799
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	266, 587, 733
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	2 cut(s)	275, 799
BaeI	ACNNNNGTAYC	2 cut(s)	761, 794
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	531
BauI	CACGAG	1 cut(s)	735
Bbv12I	GWGCWC	2 cut(s)	531, 756
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	41, 76, 479
BccI	CCATC	5 cut(s)	185, 356, 388, 770, 774
BceAI	ACGGC	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	3 cut(s)	446, 601, 625
BfaI	CTAG	2 cut(s)	279, 815
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	3 cut(s)	30, 90, 468
BlsI	GCNGC	3 cut(s)	31, 91, 469
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	275, 799
BmeRI	GACNNNNNGTC	1 cut(s)	617
BmeT110I	CYCGRG	1 cut(s)	598
BmgT120I	GGNCC	3 cut(s)	133, 275, 799
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	298, 402
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	3 cut(s)	77, 164, 315
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	409
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	136, 312
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 680
Bse3DI	GCAATG	2 cut(s)	12, 18
BseDI	CCNNGG	2 cut(s)	136, 312
BseGI	GGATG	2 cut(s)	639, 762
BseLI	CCNNNNNNNGG	2 cut(s)	137, 680
BseMI	GCAATG	2 cut(s)	12, 18
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	3 cut(s)	601, 606, 618
BseXI	GCAGC	3 cut(s)	41, 76, 479
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	4 cut(s)	135, 141, 245, 266
BsiHKAI	GWGCWC	2 cut(s)	531, 756
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	137, 680
BsmAI	GTCTC	3 cut(s)	446, 601, 625
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	135, 141, 245, 266
Bso31I	GGTCTC	1 cut(s)	625
BsoBI	CYCGRG	1 cut(s)	598
Bsp1286I	GDGCHC	2 cut(s)	531, 756
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	34, 802
BspANI	GGCC	4 cut(s)	135, 141, 245, 266
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	1 cut(s)	34
BspHI	TCATGA	1 cut(s)	756
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	625
BsrDI	GCAATG	2 cut(s)	12, 18
BssECI	CCNNGG	2 cut(s)	136, 312
BssMI	GATC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	136, 312
Bst2BI	CACGAG	1 cut(s)	735
Bst4CI	ACNGT	3 cut(s)	167, 373, 445
Bst6I	CTCTTC	1 cut(s)	503
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	639, 762
BstFNI	CGCG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	3 cut(s)	446, 601, 625
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 547
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	163
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	3 cut(s)	41, 76, 479
BsuRI	GGCC	4 cut(s)	135, 141, 245, 266
BtsCI	GGATG	2 cut(s)	639, 762
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	756
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	133, 275, 799
CseI	GACGC	1 cut(s)	50
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CviAII	CATG	6 cut(s)	73, 388, 460, 503, 757, 805
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
DriI	GACNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	503
Eam1105I	GACNNNNNGTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	529
Eco130I	CCWWGG	2 cut(s)	136, 312
Eco147I	AGGCCT	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	2 cut(s)	275, 799
Eco53kI	GAGCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	136, 312
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	2 cut(s)	136, 312
FaeI	CATG	6 cut(s)	76, 391, 463, 506, 760, 808
FalI	AAGNNNNNCTT	4 cut(s)	204, 236, 324, 356
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	6 cut(s)	72, 387, 459, 502, 756, 804
Fnu4HI	GCNGC	3 cut(s)	30, 90, 468
FokI	GGATG	2 cut(s)	626, 749
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	3 cut(s)	30, 90, 468
FspBI	CTAG	2 cut(s)	279, 815
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	3 cut(s)	30, 90, 468
HaeIII	GGCC	4 cut(s)	135, 141, 245, 266
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	6 cut(s)	76, 391, 463, 506, 760, 808
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	5 cut(s)	127, 357, 519, 594, 689
HpaI	GTTAAC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	3 cut(s)	266, 587, 733
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188III	TCNNGA	8 cut(s)	205, 305, 341, 433, 600, 665, 686, 757
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	7 cut(s)	202, 315, 338, 498, 660, 718, 783
HpyCH4III	ACNGT	3 cut(s)	167, 373, 445
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	5 cut(s)	92, 415, 467, 550, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 547
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	76, 391, 463, 506, 760, 808
HspAI	GCGC	1 cut(s)	32
KspAI	GTTAAC	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	201
LpnPI	CCDG	8 cut(s)	144, 222, 227, 273, 303, 437, 551, 666
Lsp1109I	GCAGC	3 cut(s)	41, 76, 479
LweI	GCATC	2 cut(s)	298, 402
MaeI	CTAG	2 cut(s)	279, 815
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	5 cut(s)	133, 190, 212, 403, 520
MfeI	CAATTG	1 cut(s)	624
MhlI	GDGCHC	2 cut(s)	531, 756
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	3 cut(s)	171, 624, 630
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	4 cut(s)	366, 528, 603, 683
MnlI	CCTC	9 cut(s)	250, 412, 466, 495, 574, 579, 584, 596, 609
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	3 cut(s)	174, 225, 440
MslI	CAYNNNNRTG	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	2 cut(s)	427, 470
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	29, 547
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	6 cut(s)	76, 391, 463, 506, 760, 808
NlaIV	GGNNCC	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	522
PagI	TCATGA	1 cut(s)	756
PceI	AGGCCT	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	680
PkrI	GCNGC	3 cut(s)	31, 91, 469
PleI	GAGTC	4 cut(s)	365, 527, 602, 683
PpsI	GAGTC	4 cut(s)	365, 527, 602, 683
Ppu21I	YACGTR	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	3 cut(s)	133, 275, 799
PspPPI	RGGWCCY	1 cut(s)	275
PvuII	CAGCTG	2 cut(s)	427, 470
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	174, 225, 440
SatI	GCNGC	3 cut(s)	30, 90, 468
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	3 cut(s)	133, 275, 799
SchI	GAGTC	4 cut(s)	366, 528, 603, 683
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	531, 756
SfaNI	GCATC	2 cut(s)	298, 402
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	275, 799
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	3 cut(s)	56, 143, 330
SmoI	CTYRAG	3 cut(s)	56, 143, 330
Sse9I	AATT	3 cut(s)	171, 624, 630
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	2 cut(s)	34, 802
SspMI	CTAG	2 cut(s)	279, 815
SstI	GAGCTC	1 cut(s)	531
StuI	AGGCCT	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	136, 312
TaaI	ACNGT	3 cut(s)	167, 373, 445
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	3 cut(s)	119, 306, 360
TasI	AATT	3 cut(s)	171, 624, 630
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	3 cut(s)	174, 225, 440
Tru9I	TTAA	3 cut(s)	174, 225, 440
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	3 cut(s)	29, 89, 467
TspDTI	ATGAA	3 cut(s)	404, 448, 684
TspGWI	ACGGA	1 cut(s)	628
TspRI	CASTG	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	680
VpaK11BI	GGWCC	2 cut(s)	275, 799
XspI	CTAG	2 cut(s)	279, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.