Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0019820

Physical Location & Seq

Genomic Coordinates Forward (+)

37627332 .. 37628491

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG344900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGCATCATGGCAATGTCAAAGGCAAAGATAGGGCGGAATGAAACAAAGAAAAGCCTTGAGAGTTTATTGGACATGGACAAAATAGTAGCTGCAAAGATTTCTGTTCCACTTCAATTGTCGAAGATGATTCCAGGCCAAGGCCTTGAATTCAACAACCTTTCCTACAGTGTAACAAAAAAAATAAAGAAAGATGGGGTTTGGATCAAGAAAGAAGCTTATCTTCTTAATGACATCTCTGGTCATGCAGTACAAGGTGAGATTATGGCCATTATGGGGCCTAGTGGTGCTGGAAAATCCACATTTCTCGATGCCTTGGCAGGAAGGATTGCTCAAGGAAGTCTTGAAGGCTCTGTTAGAGTCGATGGAAAAACTGTTACTACAAGCTACATGAAGATGGTTTCCTCTTATGTGATGCAAGATGACCAGCTATTCCCAATGTTGACCGTGTTTGAGACTTTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCTCTTTCCAAAGATGAGAAGAGAAAGAGAGTGTATGAGCTCCTTGACCAGCTCGGCTTGCAGACTGCAACACATACATATATTGGTGATGAGGGGAGGAGAGGAGTCTCAGGAGGTGAAAGACGCAGGGTATCAATCGGAATTGACATCATCCACAAACCTTCTCTACTGTTTCTTGATGAACCAACTTCTGGTCTTGACTCCACGAGTGCTTACAGCGTTGTAGAGAAGGTGAAAGAAATAGCTCGAGGCGGTAGCATTGTGCTCATGACTATCCATCAGCCTTCCTATCGTATTCAAAATCTCTTGGACCGCATGACAGTCCTAGCAAGGTATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0042891 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070013 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

277

Amino Acids

30.57

Weight (kDa)

9.44

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	76 - 228	6.6e-30	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0019820)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g20490
rosa_roxburghii	Rroxscaffold_3G00275160
rosa_samantha	Rh3AG308900 Rh3BG344900 Rh3CG342300 Rh7AG013100 Rh7BG013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	683
AciI	CCGC	3 cut(s)	37, 744, 805
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	140, 276, 683
AgsI	TTSAA	5 cut(s)	116, 149, 154, 347, 791
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	8 cut(s)	92, 218, 387, 430, 473, 532, 544, 737
AluI	AGCT	8 cut(s)	92, 218, 387, 430, 473, 532, 544, 737
Alw21I	GWGCWC	2 cut(s)	534, 759
Alw26I	GTCTC	2 cut(s)	449, 604
AlwI	GGATC	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	4 cut(s)	136, 142, 267, 278
ApeKI	GCWGC	2 cut(s)	92, 470
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	278, 802
AsuHPI	GGTGA	4 cut(s)	269, 590, 620, 736
AvaI	CYCGRG	1 cut(s)	738
AvaII	GGWCC	1 cut(s)	802
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	697
Bbv12I	GWGCWC	2 cut(s)	534, 759
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	79, 482
BccI	CCATC	4 cut(s)	188, 359, 391, 777
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	449, 604
BfaI	CTAG	2 cut(s)	282, 818
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	93, 471
BlsI	GCNGC	2 cut(s)	94, 472
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	802
BmeT110I	CYCGRG	1 cut(s)	738
BmgT120I	GGNCC	2 cut(s)	278, 802
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	3 cut(s)	15, 301, 405
Bpu10I	CCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	80, 318
BsaJI	CCNNGG	2 cut(s)	139, 315
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 276, 683
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	139, 315
BseGI	GGATG	1 cut(s)	642
BseLI	CCNNNNNNNGG	3 cut(s)	140, 276, 683
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	465, 615
BseRI	GAGGAG	2 cut(s)	604, 609
BseXI	GCAGC	2 cut(s)	79, 482
BshFI	GGCC	4 cut(s)	138, 144, 269, 280
BsiHKAI	GWGCWC	2 cut(s)	534, 759
BsiHKCI	CYCGRG	1 cut(s)	738
BslI	CCNNNNNNNGG	3 cut(s)	140, 276, 683
BsmAI	GTCTC	2 cut(s)	449, 604
BsnI	GGCC	4 cut(s)	138, 144, 269, 280
BsoBI	CYCGRG	1 cut(s)	738
Bsp1286I	GDGCHC	2 cut(s)	534, 759
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	37, 744, 805
BspANI	GGCC	4 cut(s)	138, 144, 269, 280
BspCNI	CTCAG	2 cut(s)	466, 614
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	139, 315
BssMI	GATC	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	697
BssT1I	CCWWGG	2 cut(s)	139, 315
Bst2BI	CACGAG	1 cut(s)	697
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	5 cut(s)	170, 376, 448, 663, 814
Bst6I	CTCTTC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	2 cut(s)	474, 601
BstF5I	GGATG	1 cut(s)	642
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	2 cut(s)	449, 604
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	79, 482
BsuRI	GGCC	4 cut(s)	138, 144, 269, 280
BtsCI	GGATG	1 cut(s)	642
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	551
CciI	TCATGA	1 cut(s)	759
Cfr13I	GGNCC	2 cut(s)	278, 802
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviAII	CATG	7 cut(s)	10, 76, 245, 391, 463, 760, 808
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	474, 601
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	139, 315
Eco147I	AGGCCT	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	802
Eco53kI	GAGCTC	1 cut(s)	532
Eco88I	CYCGRG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	139, 315
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	139, 315
FaeI	CATG	7 cut(s)	13, 79, 248, 394, 466, 763, 811
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 327, 359
FatI	CATG	7 cut(s)	9, 75, 244, 390, 462, 759, 807
Fnu4HI	GCNGC	2 cut(s)	93, 471
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	2 cut(s)	93, 471
FspBI	CTAG	2 cut(s)	282, 818
GluI	GCNGC	2 cut(s)	93, 471
HaeIII	GGCC	4 cut(s)	138, 144, 269, 280
HgaI	GACGC	1 cut(s)	624
Hin1II	CATG	7 cut(s)	13, 79, 248, 394, 466, 763, 811
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	4 cut(s)	130, 360, 597, 692
HphI	GGTGA	4 cut(s)	269, 590, 620, 736
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	1 cut(s)	632
Hpy188III	TCNNGA	7 cut(s)	208, 308, 344, 603, 668, 689, 760
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	6 cut(s)	318, 341, 501, 663, 715, 786
HpyCH4III	ACNGT	5 cut(s)	170, 376, 448, 663, 814
HpyCH4V	TGCA	6 cut(s)	95, 248, 418, 470, 553, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	2 cut(s)	474, 601
Hsp92II	CATG	7 cut(s)	13, 79, 248, 394, 466, 763, 811
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	537
Lsp1109I	GCAGC	2 cut(s)	79, 482
LweI	GCATC	3 cut(s)	15, 301, 405
MaeI	CTAG	2 cut(s)	282, 818
MaeIII	GTNAC	2 cut(s)	172, 376
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	4 cut(s)	136, 215, 406, 523
MfeI	CAATTG	1 cut(s)	116
MhlI	GDGCHC	2 cut(s)	534, 759
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	3 cut(s)	116, 149, 633
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	3 cut(s)	369, 606, 686
MnlI	CCTC	8 cut(s)	415, 469, 498, 577, 582, 587, 599, 734
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	14, 395
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	550
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	7 cut(s)	13, 79, 248, 394, 466, 763, 811
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	525
PaeR7I	CTCGAG	1 cut(s)	738
PagI	TCATGA	1 cut(s)	759
PceI	AGGCCT	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	130
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	2 cut(s)	94, 472
PleI	GAGTC	3 cut(s)	368, 605, 686
PpsI	GAGTC	3 cut(s)	368, 605, 686
Psp124BI	GAGCTC	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	278, 802
PspXI	VCTCGAGB	1 cut(s)	738
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	2 cut(s)	14, 395
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	93, 471
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	2 cut(s)	278, 802
SchI	GAGTC	3 cut(s)	369, 606, 686
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	534, 759
SfaNI	GCATC	3 cut(s)	15, 301, 405
SfcI	CTRYAG	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	738
SinI	GGWCC	1 cut(s)	802
SlaI	CTCGAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	2 cut(s)	14, 395
SmlI	CTYRAG	3 cut(s)	59, 333, 738
SmoI	CTYRAG	3 cut(s)	59, 333, 738
Sse9I	AATT	3 cut(s)	116, 149, 633
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	3 cut(s)	37, 744, 805
SspMI	CTAG	2 cut(s)	282, 818
SstI	GAGCTC	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	2 cut(s)	139, 315
TaaI	ACNGT	5 cut(s)	170, 376, 448, 663, 814
TaqI	TCGA	4 cut(s)	122, 309, 363, 739
TasI	AATT	3 cut(s)	116, 149, 633
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	2 cut(s)	92, 470
TspDTI	ATGAA	4 cut(s)	57, 407, 451, 687
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	802
XapI	RAATTY	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	738
XspI	CTAG	2 cut(s)	282, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.