Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0019820

Physical Location & Seq

Genomic Coordinates Reverse (-)

831634 .. 832677

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG013000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCAATGGCAATGGCAAAGGCAAAGGCAAAGGCAGCGCGGAATGACGCAAACAGAAGCCTTGAGAGTTTATTGGACATGGACAAAATAGTGGCTGCAAAGATTTCTGTTCCACTTCAGTTGTCGAAGATGATTCCAGGCCAAGGCCTTGAATTCAACAACCTTTCCTACAGTGTAATTAAGAAGATAAAGAAAGATGGGGTTTGGATCAAGAAGGAAGCTTATCTTCTTAATGACATATCTGGTCAGGCCGTGAAAGGTGAGGTTATGGCCATTTTGGGACCTAGTGGTGCTGGAAAATCCACATTTCTCGATGCCTTGGCAGGAAGGATTGCTCAAGGAAGTCTTGAAGGCTCTGTAAGAGTCGATGGAAAAACGGTTACTACAAGCTACATGAAGATGGTTTCCTCTTATGTGATGCAAGATGACCAGCTGTTCCCGATGTTAACTGTGTTGGAGACTTTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCTCTTTCCAAGGATGAGAAGAGAAAGAGAGTCTATGAGCTCCTTGACCAGCTCGGCTTGCAGACTGCAACACATACATATATTGGTGATGAGGGGAGGAGAGGAGTCTCGGGAGGAGAAAGACGGAGGGTCTCAATTGGAATTGACATCATCCACAAACCTTCTTTGCTGTTTCTTGATGAACCAACTTCTGGTCTTGACTCCACGAGTGCTTACAGTGTTGTGGAAAAGGTGAAGGAAATAGCTCGAGGTGGTAGCATTGTGCTCATGACCATCCATCAACCTTCGTATCGTATTCAAAATCTCCTGGACCGAATGACAATCCTAGCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0031974 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0042891 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070013 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

276

Amino Acids

30.23

Weight (kDa)

9.48

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	77 - 229	1.2e-29	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019820)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g20490
rosa_roxburghii	Rroxscaffold_3G00275160
rosa_samantha	Rh3AG308900 Rh3BG344900 Rh3CG342300 Rh7AG013100 Rh7BG013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccII	CGCG	1 cut(s)	40
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	143, 686
AgsI	TTSAA	4 cut(s)	152, 157, 350, 794
AhdI	GACNNNNNGTC	1 cut(s)	623
AjnI	CCWGG	2 cut(s)	136, 801
AluBI	AGCT	7 cut(s)	221, 390, 433, 476, 535, 547, 740
AluI	AGCT	7 cut(s)	221, 390, 433, 476, 535, 547, 740
Alw21I	GWGCWC	2 cut(s)	537, 762
Alw26I	GTCTC	3 cut(s)	452, 607, 631
AlwI	GGATC	1 cut(s)	215
Ama87I	CYCGRG	2 cut(s)	604, 741
AoxI	GGCC	4 cut(s)	139, 145, 249, 270
ApeKI	GCWGC	3 cut(s)	35, 95, 473
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	281, 805
AsuHPI	GGTGA	3 cut(s)	272, 593, 739
AvaI	CYCGRG	2 cut(s)	604, 741
AvaII	GGWCC	2 cut(s)	281, 805
BaeI	ACNNNNGTAYC	2 cut(s)	767, 800
BalI	TGGCCA	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	700
Bbv12I	GWGCWC	2 cut(s)	537, 762
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	3 cut(s)	47, 82, 485
BccI	CCATC	5 cut(s)	191, 362, 394, 776, 780
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	138, 803
BcoDI	GTCTC	3 cut(s)	452, 607, 631
BfaI	CTAG	2 cut(s)	285, 821
BfmI	CTRYAG	1 cut(s)	169
BisI	GCNGC	3 cut(s)	36, 96, 474
BlsI	GCNGC	3 cut(s)	37, 97, 475
Bme1390I	CCNGG	2 cut(s)	138, 803
Bme18I	GGWCC	2 cut(s)	281, 805
BmeRI	GACNNNNNGTC	1 cut(s)	623
BmeT110I	CYCGRG	2 cut(s)	604, 741
BmgT120I	GGNCC	2 cut(s)	281, 805
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	138, 803
BmsI	GCATC	2 cut(s)	304, 408
Bpu10I	CCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	83, 321
BsaI	GGTCTC	1 cut(s)	631
BsaJI	CCNNGG	3 cut(s)	142, 318, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 686
Bse3DI	GCAATG	2 cut(s)	12, 18
BseBI	CCWGG	2 cut(s)	138, 803
BseDI	CCNNGG	3 cut(s)	142, 318, 504
BseGI	GGATG	3 cut(s)	514, 645, 768
BseLI	CCNNNNNNNGG	2 cut(s)	143, 686
BseMI	GCAATG	2 cut(s)	12, 18
BseMII	CTCAG	1 cut(s)	468
BseRI	GAGGAG	3 cut(s)	607, 612, 624
BseXI	GCAGC	3 cut(s)	47, 82, 485
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	4 cut(s)	141, 147, 251, 272
BsiHKAI	GWGCWC	2 cut(s)	537, 762
BsiHKCI	CYCGRG	2 cut(s)	604, 741
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	143, 686
BsmAI	GTCTC	3 cut(s)	452, 607, 631
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	4 cut(s)	141, 147, 251, 272
Bso31I	GGTCTC	1 cut(s)	631
BsoBI	CYCGRG	2 cut(s)	604, 741
Bsp1286I	GDGCHC	2 cut(s)	537, 762
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	4 cut(s)	141, 147, 251, 272
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	762
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	631
BsrDI	GCAATG	2 cut(s)	12, 18
BssECI	CCNNGG	3 cut(s)	142, 318, 504
BssMI	GATC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	700
BssT1I	CCWWGG	3 cut(s)	142, 318, 504
Bst2BI	CACGAG	1 cut(s)	700
Bst2UI	CCWGG	2 cut(s)	138, 803
Bst4CI	ACNGT	4 cut(s)	173, 379, 451, 713
Bst6I	CTCTTC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	514, 645, 768
BstFNI	CGCG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	3 cut(s)	452, 607, 631
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 553
BstNI	CCWGG	2 cut(s)	138, 803
BstSCI	CCNGG	2 cut(s)	136, 801
BstSFI	CTRYAG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	47, 82, 485
BsuRI	GGCC	4 cut(s)	141, 147, 251, 272
BtsCI	GGATG	3 cut(s)	514, 645, 768
BtsIMutI	CAGTG	2 cut(s)	178, 718
Cac8I	GCNNGC	1 cut(s)	554
CciI	TCATGA	1 cut(s)	762
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	281, 805
CseI	GACGC	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	4 cut(s)	79, 394, 466, 763
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
DriI	GACNNNNNGTC	1 cut(s)	623
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	509
Eam1105I	GACNNNNNGTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	509
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	3 cut(s)	142, 318, 504
Eco147I	AGGCCT	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	281, 805
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	2 cut(s)	604, 741
EcoICRI	GAGCTC	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	2 cut(s)	136, 801
EcoT14I	CCWWGG	3 cut(s)	142, 318, 504
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	3 cut(s)	142, 318, 504
FaeI	CATG	4 cut(s)	82, 397, 469, 766
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 330, 362
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	4 cut(s)	78, 393, 465, 762
Fnu4HI	GCNGC	3 cut(s)	36, 96, 474
FokI	GGATG	3 cut(s)	521, 632, 755
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	3 cut(s)	36, 96, 474
FspBI	CTAG	2 cut(s)	285, 821
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	36, 96, 474
HaeIII	GGCC	4 cut(s)	141, 147, 251, 272
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	4 cut(s)	82, 397, 469, 766
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	5 cut(s)	133, 363, 525, 600, 695
HpaI	GTTAAC	1 cut(s)	447
HphI	GGTGA	3 cut(s)	272, 593, 739
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188III	TCNNGA	8 cut(s)	211, 311, 347, 439, 606, 671, 692, 763
Hpy8I	GTNNAC	1 cut(s)	447
HpyAV	CCTTC	7 cut(s)	208, 321, 344, 504, 666, 724, 789
HpyCH4III	ACNGT	4 cut(s)	173, 379, 451, 713
HpyCH4V	TGCA	5 cut(s)	98, 421, 473, 556, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 553
HpyF3I	CTNAG	1 cut(s)	477
Hsp92II	CATG	4 cut(s)	82, 397, 469, 766
HspAI	GCGC	1 cut(s)	38
KspAI	GTTAAC	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	540
Lsp1109I	GCAGC	3 cut(s)	47, 82, 485
LweI	GCATC	2 cut(s)	304, 408
MaeI	CTAG	2 cut(s)	285, 821
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	5 cut(s)	139, 196, 218, 409, 526
MfeI	CAATTG	1 cut(s)	630
MhlI	GDGCHC	2 cut(s)	537, 762
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	4 cut(s)	152, 177, 630, 636
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	4 cut(s)	372, 534, 609, 689
MmeI	TCCRAC	1 cut(s)	435
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	3 cut(s)	180, 231, 446
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	2 cut(s)	433, 476
MspR9I	CCNGG	2 cut(s)	138, 803
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	2 cut(s)	138, 803
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	35, 553
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	4 cut(s)	82, 397, 469, 766
NlaIV	GGNNCC	1 cut(s)	282
NmeAIII	GCCGAG	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	741
PagI	TCATGA	1 cut(s)	762
PceI	AGGCCT	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	686
PfoI	TCCNGGA	1 cut(s)	801
PkrI	GCNGC	3 cut(s)	37, 97, 475
PleI	GAGTC	4 cut(s)	371, 533, 608, 689
PpsI	GAGTC	4 cut(s)	371, 533, 608, 689
PpuMI	RGGWCCY	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	136, 801
PspGI	CCWGG	2 cut(s)	136, 801
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	281, 805
PspPPI	RGGWCCY	1 cut(s)	281
PspXI	VCTCGAGB	1 cut(s)	741
PvuII	CAGCTG	2 cut(s)	433, 476
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	180, 231, 446
SatI	GCNGC	3 cut(s)	36, 96, 474
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	2 cut(s)	281, 805
SchI	GAGTC	4 cut(s)	372, 534, 609, 689
ScrFI	CCNGG	2 cut(s)	138, 803
SduI	GDGCHC	2 cut(s)	537, 762
SfaNI	GCATC	2 cut(s)	304, 408
SfcI	CTRYAG	1 cut(s)	169
Sfr274I	CTCGAG	1 cut(s)	741
SinI	GGWCC	2 cut(s)	281, 805
SlaI	CTCGAG	1 cut(s)	741
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	3 cut(s)	62, 336, 741
SmoI	CTYRAG	3 cut(s)	62, 336, 741
Sse9I	AATT	4 cut(s)	152, 177, 630, 636
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	2 cut(s)	285, 821
SstI	GAGCTC	1 cut(s)	537
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	136, 801
StyI	CCWWGG	3 cut(s)	142, 318, 504
TaaI	ACNGT	4 cut(s)	173, 379, 451, 713
TaqI	TCGA	4 cut(s)	125, 312, 366, 742
TaqII	GACCGA	1 cut(s)	822
TasI	AATT	4 cut(s)	152, 177, 630, 636
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	180, 231, 446
Tru9I	TTAA	3 cut(s)	180, 231, 446
TscAI	CASTG	2 cut(s)	178, 718
TseI	GCWGC	3 cut(s)	35, 95, 473
TspDTI	ATGAA	3 cut(s)	410, 454, 690
TspGWI	ACGGA	1 cut(s)	634
TspRI	CASTG	2 cut(s)	178, 718
Van91I	CCANNNNNTGG	1 cut(s)	686
VpaK11BI	GGWCC	2 cut(s)	281, 805
XapI	RAATTY	1 cut(s)	152
XhoI	CTCGAG	1 cut(s)	741
XspI	CTAG	2 cut(s)	285, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.