pycom06g21610

FHA domain-containing protein At4g14490-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0020366
Physical Location & Seq
Reverse (-)
24194471 .. 24195418
948 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g21610.1

Sequence Viewer

Length: 378 bp
ATGTTGCGTTGTGTACTAGCTGGGTTGAAGTTACTCATAGTTCGCTTACAAGTAATGAGATGCAGTTGCGAGAAATGTGGAGTCTTATTCATACCAGTTTTCTTGAGAAAATTAGTGGGAAAAGAACCAAAGAATCGATGTCCAGTCGTTAGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCTTTGGCACAAGCTAGTAGTAATATTCGAAGTGGGGAAAATTACTCGGATCAGGAACTTCAAGCACAAGCTTGGTACGCTGCCAAAACCAAAAGCAAAAATAAATCATTCAACCGGTGGGAATGTTGGAATATTGTCAAAGATTGTTCTAAATTTAAAGTTGTGTCAGTCGGTCCAGAAGTGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FHA

Protein Analysis

126

Amino Acids

14.14

Weight (kDa)

10.6

Isoelectric Point (pI)

22.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020366)

Species Orthologous Gene IDs
malus_domestica MD03G1066700.v1.1
pyrus_communis pycom04g08680 pycom06g21610 pycom11g02830 pycom15g17860 pycom15g29930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 340
AfaI GTAC 3 cut(s) 15, 177, 265
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 3 cut(s) 28, 250, 300
AluBI AGCT 3 cut(s) 20, 202, 259
AluI AGCT 3 cut(s) 20, 202, 259
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 179
Alw44I GTGCAC 1 cut(s) 370
AlwI GGATC 1 cut(s) 245
ApaLI GTGCAC 1 cut(s) 370
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 340
AsiGI ACCGGT 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 361
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 2 cut(s) 17, 203
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmsI GCATC 1 cut(s) 50
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 124
Bsa29I ATCGAT 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 302
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 95, 143
BseCI ATCGAT 1 cut(s) 136
BseNI ACTGG 2 cut(s) 95, 143
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 1 cut(s) 255
BseYI CCCAGC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 374
BsiSI CCGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 237
BspDI ATCGAT 1 cut(s) 136
BspPI GGATC 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 2 cut(s) 95, 143
BssAI RCCGGY 1 cut(s) 302
BssMI GATC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 160
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 255
Bsu15I ATCGAT 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 361
ClaI ATCGAT 1 cut(s) 136
CseI GACGC 1 cut(s) 196
Csp6I GTAC 3 cut(s) 14, 176, 264
CspAI ACCGGT 1 cut(s) 302
CviAII CATG 1 cut(s) 375
CviJI RGCY 4 cut(s) 20, 164, 202, 259
CviKI_1 RGCY 4 cut(s) 20, 164, 202, 259
CviQI GTAC 3 cut(s) 14, 176, 264
DdeI CTNAG 1 cut(s) 160
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
DraI TTTAAA 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 361
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 1 cut(s) 378
FaiI YATR 3 cut(s) 38, 92, 376
FatI CATG 1 cut(s) 374
Fnu4HI GCNGC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 2 cut(s) 17, 203
GluI GCNGC 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 24
HapII CCGG 1 cut(s) 303
HgaI GACGC 1 cut(s) 196
Hin1II CATG 1 cut(s) 378
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 81, 133
HpaII CCGG 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 14, 372
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 3 cut(s) 103, 241, 364
Hpy8I GTNNAC 2 cut(s) 14, 372
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 63, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 1 cut(s) 378
Kzo9I GATC 1 cut(s) 237
LpnPI CCDG 5 cut(s) 6, 108, 156, 226, 316
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 50
MaeI CTAG 2 cut(s) 17, 203
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 30
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 4 cut(s) 110, 154, 228, 340
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 295
MseI TTAA 1 cut(s) 344
MspI CCGG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeII GATC 1 cut(s) 237
NlaIII CATG 1 cut(s) 378
NspV TTCGAA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PfeI GAWTC 1 cut(s) 133
PinAI ACCGGT 1 cut(s) 302
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 361
RsaI GTAC 3 cut(s) 15, 177, 265
RsaNI GTAC 3 cut(s) 14, 176, 264
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 1 cut(s) 90
SduI GDGCHC 1 cut(s) 374
SetI ASST 4 cut(s) 22, 181, 204, 261
SfaNI GCATC 1 cut(s) 50
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 4 cut(s) 110, 154, 228, 340
SspI AATATT 2 cut(s) 213, 321
SspMI CTAG 2 cut(s) 17, 203
TaiI ACGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 136, 216
TaqII GACCGA 1 cut(s) 349
TasI AATT 4 cut(s) 110, 154, 228, 340
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 79
VneI GTGCAC 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 340
XspI CTAG 2 cut(s) 17, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.