pycom15g17860

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
12666511 .. 12666756
246 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17860.1

Sequence Viewer

Length: 246 bp
ATGTTGCGTTGTGTACTAGTTGGGTTGAAGTTACTCATAGTTCGCTTACGGGTAATGAGATACAGTTGCGAGAAATGTGGAGTCTTATTCATACCAATTTTCTTGAGAAAATTGGTGGGAAAAGAACCAAATAATCGATGTCCAGTCGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCCTTGGCACAAGCTAGTAGTAATATTCGAAGTGGGGAAAATTACTCGGATCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.41

Weight (kDa)

10.68

Isoelectric Point (pI)

14.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020366)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 149
AclWI GGATC 1 cut(s) 245
AcyI GRCGYC 1 cut(s) 188
AfaI GTAC 2 cut(s) 15, 177
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 28
AhlI ACTAGT 1 cut(s) 16
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 179
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 2 cut(s) 17, 203
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 124
Bsa29I ATCGAT 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
Bsp119I TTCGAA 1 cut(s) 216
Bsp143I GATC 1 cut(s) 237
BspDI ATCGAT 1 cut(s) 136
BspPI GGATC 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 216
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 237
BssNI GRCGYC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 160
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 237
Bsu15I ATCGAT 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 136
CseI GACGC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 14, 176
CviJI RGCY 2 cut(s) 164, 202
CviKI_1 RGCY 2 cut(s) 164, 202
CviQI GTAC 2 cut(s) 14, 176
DdeI CTNAG 1 cut(s) 160
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
Esp3I CGTCTC 1 cut(s) 179
FaiI YATR 2 cut(s) 38, 92
FspBI CTAG 2 cut(s) 17, 203
HgaI GACGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 188
HinfI GANTC 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 178
Hsp92I GRCGYC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 237
LpnPI CCDG 2 cut(s) 156, 226
MaeI CTAG 2 cut(s) 17, 203
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 30
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MluCI AATT 4 cut(s) 96, 110, 154, 228
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 130
NdeII GATC 1 cut(s) 237
NspV TTCGAA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 149
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 179
RsaI GTAC 2 cut(s) 15, 177
RsaNI GTAC 2 cut(s) 14, 176
Sau3AI GATC 1 cut(s) 237
SchI GAGTC 1 cut(s) 90
SetI ASST 3 cut(s) 181, 204, 245
SfuI TTCGAA 1 cut(s) 216
SgeI CNNG 9 cut(s) 29, 62, 82, 115, 155, 191, 204, 211, 215
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
SpeI ACTAGT 1 cut(s) 16
Sse9I AATT 4 cut(s) 96, 110, 154, 228
SspI AATATT 1 cut(s) 213
SspMI CTAG 2 cut(s) 17, 203
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 136, 216
TasI AATT 4 cut(s) 96, 110, 154, 228
TatI WGTACW 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 149
XspI CTAG 2 cut(s) 17, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.