Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0020366

Physical Location & Seq

Genomic Coordinates Forward (+)

2229646 .. 2231482

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGTATAAGAACGCGCAGGCAGGATACTTGAATTATCTTTGGTTTGGATATAATTTGTACTTGTGCATATATATCAACACTTTCGGTATATTTTGGATGCCCATCAATCTTAATTGGAAGCAAAAATTCAACAAAAAATACGTTACAACAAACAACAACAAAAACATCATTGCACTTGGTTTTGTGTCACGTCTTCCGTTAGATTCAAGTACTCCAAGTCTTTTCCTAGTCTTCCTAGGTTTGCCTCTACCCTTTCGGCCCCGAACCTATCTCGTAATTGCGTTAACATTTCCCTTAGAGCAACTCCACCGTGGTGGATTGCTTAGGGGACAGCCCAGAGAAAAGGGCCCGAGGCCCTGCTCAAGCTCTGGGCCTGTGAAGAATTGCCAGCCCGAGAGCCCGAGTGGATGTGACGCCAGGGCTGATGTCTGCCTGGCGTCGGGCCTTTTTTTATTTTTTTTCTGTCAGGTGCGTGCACCCCACTCGCGCGTGGGGAGCGCGTCACCGACACATTTTCAGAAAAATCAGCCCACTTTTTCAGATTCAAATGTTACCGTTGGGAAGCCACGTGGCTTCCCACGGTCTGTTCGATCTCAATGGCTCATTAACTTGGACCGTTCAATCTCAACGGTAAAAAAAATAAAAAAAGTCTTATTTAATATCCACCAAAAAATAGTTTTAAAATTAAGAAAAGTACACGTGGCACAATCTGAAGTGTTGGAATTCGAATTTTTTTATATCCAACGGCAGAGATTAATTATGTTTTTACTTTTCTATAAATACCTTCTCATTATCATCTTCCTTACACCACAATTTCATATTTTCTCAACTACTTTCAATCACATTCCTTTCTTTCTCTCAAATGGTCACTTTTTGAAGATGTTGCGTTGGGTACTAGTTAGGTTGAAGTTACTCATAGTTCGCTTACGGTTAATGAGATGCAATTGCAAGCAATGTGGAGTCTTATTCATACCAATTATCTTGAGAAAATTGGTGGGAAAAGAACCAAAGAATCGATATCCAGTCATTGGAAATTACTTAGCCAATCGTTTAGTACGTGGACAGACGCCTTGGCACAAGCTAGTACTAATATTCGAAGTGGGGAAAATTACTCGGATCTGTTACATTATAATTATTTGTTTGCATTATATATTTGAACTTCAAGTACAAGCTTGGTACGGTGCCAAAACCAAAAGCAAAAATAAATCATTCAACCGGTGGGAATGTTGGAATATTGTCAAAGATTGTCCTAAATTTAGAGTTGTGCCTATCAGTCCAGAAACTATGAATAATGATAGAGATCTTGAGAAAATTGGTGTGAGATTTGTGAGGATGGATGGTGGATTATATGGAGGATTCAGAAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

457

Amino Acids

53.22

Weight (kDa)

10.2

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020366)

Species	Orthologous Gene IDs
malus_domestica	MD03G1066700.v1.1
pyrus_communis	pycom04g08680 pycom06g21610 pycom11g02830 pycom15g17860 pycom15g29930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1130
AccB1I	GGYRCC	1 cut(s)	1181
AccB7I	CCANNNNNTGG	1 cut(s)	1028
AccII	CGCG	4 cut(s)	14, 487, 489, 500
AclWI	GGATC	1 cut(s)	1124
AcsI	RAATTY	4 cut(s)	125, 722, 728, 1253
AcuI	CTGAAG	1 cut(s)	732
AcvI	CACGTG	2 cut(s)	569, 700
AcyI	GRCGYC	3 cut(s)	414, 437, 1067
AfaI	GTAC	8 cut(s)	59, 211, 696, 894, 1056, 1086, 1167, 1178
AfiI	CCNNNNNNNGG	2 cut(s)	439, 1028
AflIII	ACRYGT	1 cut(s)	697
AgeI	ACCGGT	1 cut(s)	1215
AhlI	ACTAGT	1 cut(s)	895
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	416, 432
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	3 cut(s)	366, 1081, 1172
AluI	AGCT	3 cut(s)	366, 1081, 1172
Alw21I	GWGCWC	1 cut(s)	478
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	1124
Ama87I	CYCGRG	3 cut(s)	349, 392, 400
AoxI	GGCC	5 cut(s)	257, 346, 353, 371, 442
ApaI	GGGCCC	1 cut(s)	350
ApaLI	GTGCAC	1 cut(s)	474
ApoI	RAATTY	4 cut(s)	125, 722, 728, 1253
AseI	ATTAAT	1 cut(s)	755
AsiGI	ACCGGT	1 cut(s)	1215
AspA2I	CCTAGG	1 cut(s)	235
AspLEI	GCGC	3 cut(s)	16, 489, 500
AspS9I	GGNCC	7 cut(s)	258, 346, 347, 354, 371, 442, 613
AsuHPI	GGTGA	1 cut(s)	495
AsuII	TTCGAA	2 cut(s)	726, 1095
AvaI	CYCGRG	3 cut(s)	349, 392, 400
AvaII	GGWCC	1 cut(s)	613
AvrII	CCTAGG	1 cut(s)	235
BaeGI	GKGCMC	2 cut(s)	350, 478
BanI	GGYRCC	1 cut(s)	1181
BanII	GRGCYC	2 cut(s)	350, 401
BbrPI	CACGTG	2 cut(s)	569, 700
BbsI	GAAGAC	2 cut(s)	185, 223
Bbv12I	GWGCWC	1 cut(s)	478
BccI	CCATC	3 cut(s)	110, 1327, 1331
BceAI	ACGGC	1 cut(s)	761
BcgI	CGANNNNNNTGC	2 cut(s)	465, 499
BciT130I	CCWGG	2 cut(s)	418, 434
BciVI	GTATCC	1 cut(s)	17
BcuI	ACTAGT	1 cut(s)	895
BfaI	CTAG	4 cut(s)	227, 236, 896, 1082
BfuI	GTATCC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	1300
BlnI	CCTAGG	1 cut(s)	235
BmcAI	AGTACT	2 cut(s)	211, 1086
Bme1390I	CCNGG	2 cut(s)	418, 434
Bme18I	GGWCC	1 cut(s)	613
BmeT110I	CYCGRG	3 cut(s)	349, 392, 400
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	7 cut(s)	258, 346, 347, 354, 371, 442, 613
BmiI	GGNNCC	3 cut(s)	260, 348, 1183
BmrFI	CCNGG	2 cut(s)	418, 434
BmsI	GCATC	2 cut(s)	87, 929
BpiI	GAAGAC	2 cut(s)	185, 223
Bpu10I	CCTNAGC	1 cut(s)	323
Bpu14I	TTCGAA	2 cut(s)	726, 1095
BpuEI	CTTGAG	3 cut(s)	346, 1003, 1325
Bsa29I	ATCGAT	1 cut(s)	1015
BsaAI	YACGTR	3 cut(s)	569, 700, 1058
BsaBI	GATNNNNATC	2 cut(s)	101, 1299
BsaHI	GRCGYC	3 cut(s)	414, 437, 1067
BsaJI	CCNNGG	6 cut(s)	235, 310, 350, 417, 578, 1070
BsaWI	WCCGGW	1 cut(s)	1215
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 1028
Bse118I	RCCGGY	1 cut(s)	1215
Bse1I	ACTGG	1 cut(s)	1022
Bse3DI	GCAATG	2 cut(s)	168, 959
Bse8I	GATNNNNATC	2 cut(s)	101, 1299
BseBI	CCWGG	2 cut(s)	418, 434
BseCI	ATCGAT	1 cut(s)	1015
BseDI	CCNNGG	6 cut(s)	235, 310, 350, 417, 578, 1070
BseGI	GGATG	4 cut(s)	102, 413, 1338, 1342
BseJI	GATNNNNATC	2 cut(s)	101, 1299
BseLI	CCNNNNNNNGG	2 cut(s)	439, 1028
BseMI	GCAATG	2 cut(s)	168, 959
BseNI	ACTGG	1 cut(s)	1022
BseSI	GKGCMC	2 cut(s)	350, 478
Bsh1236I	CGCG	4 cut(s)	14, 487, 489, 500
BshFI	GGCC	5 cut(s)	259, 348, 355, 373, 444
BshNI	GGYRCC	1 cut(s)	1181
BshTI	ACCGGT	1 cut(s)	1215
BshVI	ATCGAT	1 cut(s)	1015
BsiHKAI	GWGCWC	1 cut(s)	478
BsiHKCI	CYCGRG	3 cut(s)	349, 392, 400
BsiSI	CCGG	1 cut(s)	1216
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	439, 1028
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	5 cut(s)	259, 348, 355, 373, 444
BsoBI	CYCGRG	3 cut(s)	349, 392, 400
Bsp119I	TTCGAA	2 cut(s)	726, 1095
Bsp120I	GGGCCC	1 cut(s)	346
Bsp1286I	GDGCHC	3 cut(s)	350, 401, 478
Bsp143I	GATC	3 cut(s)	590, 1116, 1300
BspANI	GGCC	5 cut(s)	259, 348, 355, 373, 444
BspDI	ATCGAT	1 cut(s)	1015
BspFNI	CGCG	4 cut(s)	14, 487, 489, 500
BspLI	GGNNCC	3 cut(s)	260, 348, 1183
BspPI	GGATC	1 cut(s)	1124
BspT104I	TTCGAA	2 cut(s)	726, 1095
BspT107I	GGYRCC	1 cut(s)	1181
BsrDI	GCAATG	2 cut(s)	168, 959
BsrFI	RCCGGY	1 cut(s)	1215
BsrI	ACTGG	1 cut(s)	1022
BssAI	RCCGGY	1 cut(s)	1215
BssECI	CCNNGG	6 cut(s)	235, 310, 350, 417, 578, 1070
BssMI	GATC	3 cut(s)	590, 1116, 1300
BssNI	GRCGYC	3 cut(s)	414, 437, 1067
BssT1I	CCWWGG	2 cut(s)	235, 1070
Bst2UI	CCWGG	2 cut(s)	418, 434
Bst4CI	ACNGT	7 cut(s)	311, 556, 582, 617, 631, 930, 1181
BstACI	GRCGYC	3 cut(s)	414, 437, 1067
BstBAI	YACGTR	3 cut(s)	569, 700, 1058
BstBI	TTCGAA	2 cut(s)	726, 1095
BstC8I	GCNNGC	4 cut(s)	18, 389, 474, 950
BstDEI	CTNAG	3 cut(s)	295, 323, 1039
BstDSI	CCRYGG	2 cut(s)	310, 578
BstF5I	GGATG	4 cut(s)	102, 413, 1338, 1342
BstFNI	CGCG	4 cut(s)	14, 487, 489, 500
BstHHI	GCGC	3 cut(s)	16, 489, 500
BstKTI	GATC	3 cut(s)	593, 1119, 1303
BstMBI	GATC	3 cut(s)	590, 1116, 1300
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstNI	CCWGG	2 cut(s)	418, 434
BstSCI	CCNGG	2 cut(s)	416, 432
BstSLI	GKGCMC	2 cut(s)	350, 478
BstUI	CGCG	4 cut(s)	14, 487, 489, 500
BstV2I	GAAGAC	2 cut(s)	185, 223
BstX2I	RGATCY	2 cut(s)	1116, 1300
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	2 cut(s)	1116, 1300
Bsu15I	ATCGAT	1 cut(s)	1015
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	5 cut(s)	259, 348, 355, 373, 444
BsuTUI	ATCGAT	1 cut(s)	1015
BtgI	CCRYGG	2 cut(s)	310, 578
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	102, 413, 1338, 1342
Cac8I	GCNNGC	4 cut(s)	18, 389, 474, 950
CfoI	GCGC	3 cut(s)	16, 489, 500
Cfr10I	RCCGGY	1 cut(s)	1215
Cfr13I	GGNCC	7 cut(s)	258, 346, 347, 354, 371, 442, 613
ClaI	ATCGAT	1 cut(s)	1015
CseI	GACGC	4 cut(s)	422, 426, 489, 1075
Csp6I	GTAC	8 cut(s)	58, 210, 695, 893, 1055, 1085, 1166, 1177
CspAI	ACCGGT	1 cut(s)	1215
CspCI	CAANNNNNGTGG	2 cut(s)	937, 972
CviQI	GTAC	8 cut(s)	58, 210, 695, 893, 1055, 1085, 1166, 1177
DdeI	CTNAG	3 cut(s)	295, 323, 1039
DpnI	GATC	3 cut(s)	592, 1118, 1302
DpnII	GATC	3 cut(s)	590, 1116, 1300
DraI	TTTAAA	1 cut(s)	681
Eco130I	CCWWGG	2 cut(s)	235, 1070
Eco24I	GRGCYC	2 cut(s)	350, 401
Eco32I	GATATC	1 cut(s)	1019
Eco47I	GGWCC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	732
Eco72I	CACGTG	2 cut(s)	569, 700
Eco88I	CYCGRG	3 cut(s)	349, 392, 400
EcoO109I	RGGNCCY	2 cut(s)	346, 354
EcoRI	GAATTC	1 cut(s)	722
EcoRII	CCWGG	2 cut(s)	416, 432
EcoRV	GATATC	1 cut(s)	1019
EcoT14I	CCWWGG	2 cut(s)	235, 1070
EcoT38I	GRGCYC	2 cut(s)	350, 401
ErhI	CCWWGG	2 cut(s)	235, 1070
FaqI	GGGAC	1 cut(s)	342
FokI	GGATG	4 cut(s)	109, 420, 1345, 1349
FriOI	GRGCYC	2 cut(s)	350, 401
FspBI	CTAG	4 cut(s)	227, 236, 896, 1082
GlaI	GCGC	3 cut(s)	15, 488, 499
HaeIII	GGCC	5 cut(s)	259, 348, 355, 373, 444
HapII	CCGG	1 cut(s)	1216
HgaI	GACGC	4 cut(s)	422, 426, 489, 1075
HhaI	GCGC	3 cut(s)	16, 489, 500
Hin1I	GRCGYC	3 cut(s)	414, 437, 1067
Hin6I	GCGC	3 cut(s)	14, 487, 498
HinP1I	GCGC	3 cut(s)	14, 487, 498
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	1170
HinfI	GANTC	5 cut(s)	203, 542, 960, 1012, 1356
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	1216
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	4 cut(s)	285, 476, 697, 1061
Hpy188I	TCNGA	5 cut(s)	519, 541, 712, 1116, 1361
Hpy188III	TCNNGA	3 cut(s)	982, 1277, 1304
Hpy8I	GTNNAC	4 cut(s)	285, 476, 697, 1061
Hpy99I	CGWCG	1 cut(s)	442
HpyAV	CCTTC	1 cut(s)	794
HpyCH4III	ACNGT	7 cut(s)	311, 556, 582, 617, 631, 930, 1181
HpyCH4IV	ACGT	5 cut(s)	141, 190, 568, 699, 1057
HpyCH4V	TGCA	6 cut(s)	66, 173, 476, 942, 948, 1144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	3 cut(s)	295, 323, 1039
HpySE526I	ACGT	5 cut(s)	141, 190, 568, 699, 1057
Hsp92I	GRCGYC	3 cut(s)	414, 437, 1067
HspAI	GCGC	3 cut(s)	14, 487, 498
KspAI	GTTAAC	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	590, 1116, 1300
LmnI	GCTCC	1 cut(s)	495
LweI	GCATC	2 cut(s)	87, 929
MaeI	CTAG	4 cut(s)	227, 236, 896, 1082
MaeII	ACGT	5 cut(s)	141, 190, 568, 699, 1057
MaeIII	GTNAC	8 cut(s)	142, 186, 410, 501, 550, 866, 909, 1121
MalI	GATC	3 cut(s)	592, 1118, 1302
MboI	GATC	3 cut(s)	590, 1116, 1300
MboII	GAAGA	5 cut(s)	185, 223, 391, 790, 889
MfeI	CAATTG	1 cut(s)	943
MflI	RGATCY	2 cut(s)	1116, 1300
MhlI	GDGCHC	3 cut(s)	350, 401, 478
MlyI	GAGTC	1 cut(s)	969
MmeI	TCCRAC	3 cut(s)	699, 766, 1208
MnlI	CCTC	4 cut(s)	255, 345, 1323, 1346
MseI	TTAA	8 cut(s)	111, 284, 606, 657, 680, 686, 755, 932
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	1 cut(s)	1216
MspR9I	CCNGG	2 cut(s)	418, 434
MunI	CAATTG	1 cut(s)	943
MvaI	CCWGG	2 cut(s)	418, 434
MvnI	CGCG	4 cut(s)	14, 487, 489, 500
MwoI	GCNNNNNNNGC	1 cut(s)	495
NdeII	GATC	3 cut(s)	590, 1116, 1300
NlaIV	GGNNCC	3 cut(s)	260, 348, 1183
NmuCI	GTSAC	4 cut(s)	186, 410, 501, 866
NspV	TTCGAA	2 cut(s)	726, 1095
OliI	CACNNNNGTG	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	2 cut(s)	586, 1054
PfeI	GAWTC	4 cut(s)	203, 542, 1012, 1356
PflMI	CCANNNNNTGG	1 cut(s)	1028
PinAI	ACCGGT	1 cut(s)	1215
PleI	GAGTC	1 cut(s)	968
PmaCI	CACGTG	2 cut(s)	569, 700
PmlI	CACGTG	2 cut(s)	569, 700
PpsI	GAGTC	1 cut(s)	968
Ppu21I	YACGTR	3 cut(s)	569, 700, 1058
PshBI	ATTAAT	1 cut(s)	755
PsiI	TTATAA	1 cut(s)	1130
Psp6I	CCWGG	2 cut(s)	416, 432
PspCI	CACGTG	2 cut(s)	569, 700
PspGI	CCWGG	2 cut(s)	416, 432
PspN4I	GGNNCC	3 cut(s)	260, 348, 1183
PspOMI	GGGCCC	1 cut(s)	346
PspPI	GGNCC	7 cut(s)	258, 346, 347, 354, 371, 442, 613
PsrI	GAACNNNNNNTAC	2 cut(s)	1149, 1181
PsuI	RGATCY	2 cut(s)	1116, 1300
RsaI	GTAC	8 cut(s)	59, 211, 696, 894, 1056, 1086, 1167, 1178
RsaNI	GTAC	8 cut(s)	58, 210, 695, 893, 1055, 1085, 1166, 1177
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	8 cut(s)	111, 284, 606, 657, 680, 686, 755, 932
Sau3AI	GATC	3 cut(s)	590, 1116, 1300
Sau96I	GGNCC	7 cut(s)	258, 346, 347, 354, 371, 442, 613
ScaI	AGTACT	2 cut(s)	211, 1086
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	2 cut(s)	418, 434
SduI	GDGCHC	3 cut(s)	350, 401, 478
SfaNI	GCATC	2 cut(s)	87, 929
SfuI	TTCGAA	2 cut(s)	726, 1095
SinI	GGWCC	1 cut(s)	613
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	3 cut(s)	361, 982, 1304
SmoI	CTYRAG	3 cut(s)	361, 982, 1304
SpeI	ACTAGT	1 cut(s)	895
SspI	AATATT	2 cut(s)	1092, 1234
SspMI	CTAG	4 cut(s)	227, 236, 896, 1082
StyD4I	CCNGG	2 cut(s)	416, 432
StyI	CCWWGG	2 cut(s)	235, 1070
TaaI	ACNGT	7 cut(s)	311, 556, 582, 617, 631, 930, 1181
TaiI	ACGT	5 cut(s)	144, 193, 571, 702, 1060
TaqI	TCGA	4 cut(s)	589, 726, 1015, 1095
TatI	WGTACW	5 cut(s)	57, 209, 694, 1084, 1165
TfiI	GAWTC	4 cut(s)	203, 542, 1012, 1356
Tru1I	TTAA	8 cut(s)	111, 284, 606, 657, 680, 686, 755, 932
Tru9I	TTAA	8 cut(s)	111, 284, 606, 657, 680, 686, 755, 932
TseFI	GTSAC	4 cut(s)	186, 410, 501, 866
Tsp45I	GTSAC	4 cut(s)	186, 410, 501, 866
TspDTI	ATGAA	3 cut(s)	806, 958, 1301
TspGWI	ACGGA	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	1028
VneI	GTGCAC	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	613
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	4 cut(s)	125, 722, 728, 1253
XmaJI	CCTAGG	1 cut(s)	235
XspI	CTAG	4 cut(s)	227, 236, 896, 1082
ZrmI	AGTACT	2 cut(s)	211, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.