Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011112

Physical Location & Seq

Genomic Coordinates Forward (+)

807523 .. 809864

Gene Structure 2342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAAGCTCACGGGTCGGGGCTGTGCCGCGTGTTGGTGTTCGGCTTCTGTGTCGTCGGAATTTGGGCTGCGTATATTTACCAAGGCGTTCTTCAGGAAACTCTGTCCACGAAGCGATTCGGGCGAGATGGGCATAGGTTCGAACACCTTGCAGTCTTGAACTTGGCTCAGAATGTGGTCTGTCTAATCTGGTCATATATAATGATAAAGCTTTGGTCTAGCAGCAATGCTGGAGGCGCTCTTATGTGGACGTTCTGGAGTGCAGGGATTACTAATACGATTGGACCCGCTATGGGGATCGAAGCGTTGAAGTACATCAGTTACCCGGCTCAGGTCTTGGCAAAGTCCTCAAAAATGATTCCAGTGATGCTGATGGGTACTCTAGTCTACGGCAAAAGATACAGCTTTCCTGAATATGTTTGTACTCTTCTTGTCGCCGGAGGAGTATCCATATTTGCACTCTTGAAGACTAGTTCAAAGACTATTAGCAAGTTGGCGCACCCAAATGCGCCTCTTGGATATGGACTATGTTTCCTCAACCTCGCTTTTGATGGATTCACAAATGCTACCCAGGACTCAATAACTGCGAGGTATCCAAAGACGAGCGCTTGGGACATAATGTTAGGCATGAATTTGTGGGGTACCATATACAACATGATCTACATGTTTGGCTGGCCTCGTGGCAGCGGATTTGAGGCAGTACAATTCTGCAAGCAGCATCCAGAAGCGGCTTGGGACATTTTTCTCTATTGTCTCTGTGGTGCTGTTGGACAGAACTTCATTTTCCTAACCATAAGTCGATTTGGTTCCTTAGCTAACACCACCATTACCACAACCCGCAAGTTTGTAAGCATCGTGGTGTCTTCGGTGCTGAGCGGCAATCCCCTGTCAACGAAGCAATGGGGATCAGTTGTCATGGTATTTTCCGGGCTGTCGTATCATATATACCACAAGTGGAGGAAATTGCAGAGAGCTCCACAAAAGAGAAAGCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009553 GO:0009555 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0030173 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0032501 GO:0032502 GO:0033554 GO:0034220 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071702 GO:0071705 GO:0072334 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

333

Amino Acids

36.9

Weight (kDa)

9.62

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	14 - 317	2.3e-76	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14360 AT2G02810
fragaria_vesca	FvH4_4g31670
malus_domestica	MD07G1011400.v1.1 MD13G1076000.v1.1 MD16G1076200.v1.1
prunus_persica	Prupe.1G270800_v2.0.a1
pyrus_communis	pycom07g00950 pycom13g06690 pycom16g06620
rosa_chinensis	RchiOBHm_Chr4g0440181
rosa_laevigata	RLG00000006198
rosa_multiflora	Rmu_sc0001685.1_g000024
rosa_roxburghii	Rroxscaffold_5G00381110
rosa_rugosa	Rorug04G0325100
rosa_samantha	Rh4AG375800 Rh4BG388700 Rh4CG403100 Rh4DG382500
rosa_wichuraiana	Rw4G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	641
AccBSI	CCGCTC	1 cut(s)	876
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	1 cut(s)	30
AciI	CCGC	6 cut(s)	28, 288, 687, 728, 838, 876
AclWI	GGATC	2 cut(s)	305, 913
AcsI	RAATTY	2 cut(s)	60, 631
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	5 cut(s)	314, 379, 424, 643, 702
AfeI	AGCGCT	1 cut(s)	607
AfiI	CCNNNNNNNGG	4 cut(s)	34, 293, 294, 331
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	4 cut(s)	160, 310, 466, 477
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	570
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	5 cut(s)	8, 211, 405, 815, 974
AluI	AGCT	5 cut(s)	8, 211, 405, 815, 974
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	2 cut(s)	305, 913
Aor51HI	AGCGCT	1 cut(s)	607
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	4 cut(s)	68, 222, 684, 715
ApoI	RAATTY	2 cut(s)	60, 631
Asp700I	GAANNNNTTC	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	641
AspLEI	GCGC	4 cut(s)	239, 499, 511, 608
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	2 cut(s)	326, 928
AsuII	TTCGAA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	284
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	976
BauI	CACGAG	1 cut(s)	678
BbsI	GAAGAC	2 cut(s)	473, 855
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	4 cut(s)	55, 234, 696, 727
BccI	CCATC	3 cut(s)	122, 367, 545
BceAI	ACGGC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	572
BciVI	GTATCC	2 cut(s)	457, 603
BcnI	CCSGG	2 cut(s)	326, 928
BcoDI	GTCTC	1 cut(s)	758
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	3 cut(s)	219, 383, 471
BfoI	RGCGCY	2 cut(s)	240, 609
BfuI	GTATCC	2 cut(s)	457, 603
BisI	GCNGC	7 cut(s)	28, 69, 223, 685, 716, 729, 877
BlpI	GCTNAGC	1 cut(s)	872
BlsI	GCNGC	7 cut(s)	29, 70, 224, 686, 717, 730, 878
Bme1390I	CCNGG	3 cut(s)	326, 572, 928
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	3 cut(s)	286, 643, 808
BmrFI	CCNGG	3 cut(s)	326, 572, 928
BmsI	GCATC	3 cut(s)	357, 727, 861
BpiI	GAAGAC	2 cut(s)	473, 855
BpmI	CTGGAG	2 cut(s)	252, 277
Bpu10I	CCTNAGC	2 cut(s)	330, 811
Bpu1102I	GCTNAGC	1 cut(s)	872
Bpu14I	TTCGAA	1 cut(s)	141
BpuMI	CCSGG	2 cut(s)	326, 928
BsaJI	CCNNGG	2 cut(s)	82, 570
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 293, 294, 331
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	2 cut(s)	232, 905
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	2 cut(s)	82, 570
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	4 cut(s)	34, 293, 294, 331
BseMI	GCAATG	2 cut(s)	232, 905
BseMII	CTCAG	3 cut(s)	182, 344, 863
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	4 cut(s)	55, 234, 696, 727
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	676
BshNI	GGYRCC	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	976
BsiSI	CCGG	3 cut(s)	326, 438, 927
BslFI	GGGAC	2 cut(s)	626, 749
BslI	CCNNNNNNNGG	4 cut(s)	34, 293, 294, 331
BsmAI	GTCTC	1 cut(s)	758
BsmFI	GGGAC	2 cut(s)	626, 749
BsnI	GGCC	1 cut(s)	676
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp143I	GATC	3 cut(s)	297, 657, 905
Bsp1720I	GCTNAGC	1 cut(s)	872
BspACI	CCGC	6 cut(s)	28, 288, 687, 728, 838, 876
BspANI	GGCC	1 cut(s)	676
BspCNI	CTCAG	3 cut(s)	181, 343, 864
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	286, 643, 808
BspPI	GGATC	2 cut(s)	305, 913
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	641
BsrBI	CCGCTC	1 cut(s)	876
BsrDI	GCAATG	2 cut(s)	232, 905
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	82, 570
BssMI	GATC	3 cut(s)	297, 657, 905
BssSI	CACGAG	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	82
Bst2BI	CACGAG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	572
Bst6I	CTCTTC	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	674, 713
BstDEI	CTNAG	4 cut(s)	168, 330, 811, 872
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	2 cut(s)	240, 609
BstHHI	GCGC	4 cut(s)	239, 499, 511, 608
BstKTI	GATC	3 cut(s)	300, 660, 908
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	3 cut(s)	297, 657, 905
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 130, 236
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	3 cut(s)	324, 570, 926
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	4 cut(s)	55, 234, 696, 727
BstV2I	GAAGAC	2 cut(s)	473, 855
BsuI	GTATCC	2 cut(s)	457, 603
BsuRI	GGCC	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	674, 713
CfoI	GCGC	4 cut(s)	239, 499, 511, 608
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	5 cut(s)	313, 378, 423, 642, 701
CviAII	CATG	4 cut(s)	628, 655, 664, 916
CviQI	GTAC	5 cut(s)	313, 378, 423, 642, 701
DdeI	CTNAG	4 cut(s)	168, 330, 811, 872
DpnI	GATC	3 cut(s)	299, 659, 907
DpnII	GATC	3 cut(s)	297, 657, 905
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	974
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	976
Eco47I	GGWCC	1 cut(s)	284
Eco47III	AGCGCT	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	974
Eco57I	CTGAAG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	974
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	976
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	4 cut(s)	631, 658, 667, 919
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	626, 749
FatI	CATG	4 cut(s)	627, 654, 663, 915
FauI	CCCGC	2 cut(s)	295, 845
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	7 cut(s)	28, 69, 223, 685, 716, 729, 877
FokI	GGATG	1 cut(s)	705
FriOI	GRGCYC	1 cut(s)	976
Fsp4HI	GCNGC	7 cut(s)	28, 69, 223, 685, 716, 729, 877
FspBI	CTAG	3 cut(s)	219, 383, 471
GlaI	GCGC	4 cut(s)	238, 498, 510, 607
GluI	GCNGC	7 cut(s)	28, 69, 223, 685, 716, 729, 877
GsuI	CTGGAG	2 cut(s)	252, 277
HaeII	RGCGCY	2 cut(s)	240, 609
HaeIII	GGCC	1 cut(s)	676
HapII	CCGG	3 cut(s)	326, 438, 927
HhaI	GCGC	4 cut(s)	239, 499, 511, 608
Hin1II	CATG	4 cut(s)	631, 658, 667, 919
Hin6I	GCGC	4 cut(s)	237, 497, 509, 606
HinP1I	GCGC	4 cut(s)	237, 497, 509, 606
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	4 cut(s)	117, 358, 555, 575
HpaII	CCGG	3 cut(s)	326, 438, 927
Hpy166II	GTNNAC	4 cut(s)	108, 249, 388, 891
Hpy188I	TCNGA	2 cut(s)	59, 171
Hpy188III	TCNNGA	6 cut(s)	95, 157, 256, 410, 463, 722
Hpy8I	GTNNAC	4 cut(s)	108, 249, 388, 891
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	5 cut(s)	152, 263, 458, 711, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 130, 236
HpyF3I	CTNAG	4 cut(s)	168, 330, 811, 872
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	4 cut(s)	631, 658, 667, 919
HspAI	GCGC	4 cut(s)	237, 497, 509, 606
KpnI	GGTACC	1 cut(s)	645
Kzo9I	GATC	3 cut(s)	297, 657, 905
LmnI	GCTCC	1 cut(s)	979
Lsp1109I	GCAGC	4 cut(s)	55, 234, 696, 727
LweI	GCATC	3 cut(s)	357, 727, 861
MaeI	CTAG	3 cut(s)	219, 383, 471
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	3 cut(s)	299, 659, 907
MbiI	CCGCTC	1 cut(s)	876
MboI	GATC	3 cut(s)	297, 657, 905
MboII	GAAGA	4 cut(s)	83, 419, 478, 855
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	4 cut(s)	60, 631, 704, 962
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	2 cut(s)	37, 748
MroXI	GAANNNNTTC	1 cut(s)	116
MslI	CAYNNNNRTG	2 cut(s)	504, 857
MspA1I	CMGCKG	1 cut(s)	687
MspI	CCGG	3 cut(s)	326, 438, 927
MspR9I	CCNGG	3 cut(s)	326, 572, 928
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	121, 130, 236
NciI	CCSGG	2 cut(s)	326, 928
NdeII	GATC	3 cut(s)	297, 657, 905
NlaIII	CATG	4 cut(s)	631, 658, 667, 919
NlaIV	GGNNCC	3 cut(s)	286, 643, 808
NspI	RCATGY	1 cut(s)	667
NspV	TTCGAA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	663
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	117, 358, 555
PkrI	GCNGC	7 cut(s)	29, 70, 224, 686, 717, 730, 878
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
PscI	ACATGT	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	976
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	3 cut(s)	286, 643, 808
PspPI	GGNCC	1 cut(s)	284
RsaI	GTAC	5 cut(s)	314, 379, 424, 643, 702
RsaNI	GTAC	5 cut(s)	313, 378, 423, 642, 701
RseI	CAYNNNNRTG	2 cut(s)	504, 857
SacI	GAGCTC	1 cut(s)	976
SatI	GCNGC	7 cut(s)	28, 69, 223, 685, 716, 729, 877
Sau3AI	GATC	3 cut(s)	297, 657, 905
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	326, 572, 928
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	3 cut(s)	357, 727, 861
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	504, 857
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	4 cut(s)	60, 631, 704, 962
SsiI	CCGC	6 cut(s)	28, 288, 687, 728, 838, 876
SspMI	CTAG	3 cut(s)	219, 383, 471
SstI	GAGCTC	1 cut(s)	976
StyD4I	CCNGG	3 cut(s)	324, 570, 926
StyI	CCWWGG	1 cut(s)	82
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	3 cut(s)	141, 300, 799
TasI	AATT	4 cut(s)	60, 631, 704, 962
TatI	WGTACW	3 cut(s)	312, 422, 700
TauI	GCSGC	3 cut(s)	30, 731, 879
TfiI	GAWTC	3 cut(s)	117, 358, 555
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	4 cut(s)	68, 222, 684, 715
TspDTI	ATGAA	2 cut(s)	644, 769
TspRI	CASTG	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	2 cut(s)	60, 631
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	3 cut(s)	219, 383, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.