pycom07g07170

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0020437
Physical Location & Seq
Forward (+)
6517358 .. 6517714
357 bp
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UTR
Exon/CDS
Intron
pycom07g07170.1

Sequence Viewer

Length: 357 bp
ATGCCATTTCCCACTTTTTCTTCTGGTCAATGGTGGCATTACATTTTTGGTGGAAGCTGCATTGCCTGGTTTCAGGATGGGTACAACCCAGTGGCGGTTGATATGAAGGGAGACGAGGACAATTCTAGGAGCAATAAGAAGAGAAATCCATTCAATGCTGATTTTTTCGGCTCTCTCTGCTATACTTTCCAGCACAGGAAACTTATAGAGCTCTACGGTGATCTAACCAGGATTAATTCTCTTCACGATATTTGTTCAGCTTCAGCTTTGGCTAAAAGGGTTATTTGTGGTTTGAAGAGTTCCTCTGCTAATAGTGCACAAGATCGATCATGGTGTCCTCCCCTAGGATCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3769

Protein Analysis

119

Amino Acids

13.25

Weight (kDa)

8.32

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020437)

Species Orthologous Gene IDs
pyrus_communis pycom07g07170 pycom07g07210 pycom07g07290 pycom07g07370
rosa_chinensis RchiOBHm_Chr1g0344131
rosa_multiflora Rmu_sc0001568.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 94, 344
AgsI TTSAA 2 cut(s) 154, 295
AjnI CCWGG 2 cut(s) 65, 227
AluBI AGCT 4 cut(s) 57, 211, 260, 266
AluI AGCT 4 cut(s) 57, 211, 260, 266
Alw21I GWGCWC 2 cut(s) 213, 319
Alw26I GTCTC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 315
AlwI GGATC 1 cut(s) 355
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 57
AseI ATTAAT 1 cut(s) 234
AspA2I CCTAGG 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 230
AvrII CCTAGG 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 2 cut(s) 213, 319
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 67, 229
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 2 cut(s) 126, 344
BisI GCNGC 1 cut(s) 58
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 67, 229
BmrFI CCNGG 2 cut(s) 67, 229
BmrI ACTGGG 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 343
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 344
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 2 cut(s) 67, 229
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 94, 344
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 325
BsiHKAI GWGCWC 2 cut(s) 213, 319
BslI CCNNNNNNNGG 2 cut(s) 94, 344
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 213, 319
Bsp143I GATC 4 cut(s) 220, 322, 326, 347
BspACI CCGC 1 cut(s) 95
BspDI ATCGAT 1 cut(s) 325
BspPI GGATC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 4 cut(s) 220, 322, 326, 347
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 2 cut(s) 67, 229
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 3 cut(s) 134, 246, 290
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 4 cut(s) 223, 325, 329, 350
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 220, 322, 326, 347
BstMWI GCNNNNNNNGC 2 cut(s) 177, 314
BstNI CCWGG 2 cut(s) 67, 229
BstSCI CCNGG 2 cut(s) 65, 227
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 325
BsuTUI ATCGAT 1 cut(s) 325
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 96
ClaI ATCGAT 1 cut(s) 325
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 330
CviJI RGCY 6 cut(s) 57, 171, 211, 260, 266, 272
CviKI_1 RGCY 6 cut(s) 57, 171, 211, 260, 266, 272
CviQI GTAC 1 cut(s) 82
DpnI GATC 4 cut(s) 222, 324, 328, 349
DpnII GATC 4 cut(s) 220, 322, 326, 347
Eam1104I CTCTTC 3 cut(s) 134, 246, 290
EarI CTCTTC 3 cut(s) 134, 246, 290
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 211
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 65, 227
EcoT14I CCWWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 343
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 1 cut(s) 333
FaiI YATR 5 cut(s) 104, 183, 206, 331, 355
FatI CATG 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 2 cut(s) 126, 344
GluI GCNGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 333
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 74, 245
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 60, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 314
Hsp92II CATG 1 cut(s) 333
Kzo9I GATC 4 cut(s) 220, 322, 326, 347
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 9 cut(s) 9, 52, 59, 79, 102, 181, 203, 214, 241
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 2 cut(s) 126, 344
MalI GATC 4 cut(s) 222, 324, 328, 349
MboI GATC 4 cut(s) 220, 322, 326, 347
MboII GAAGA 4 cut(s) 12, 151, 233, 307
MhlI GDGCHC 2 cut(s) 213, 319
MluCI AATT 2 cut(s) 121, 235
MnlI CCTC 3 cut(s) 109, 313, 348
MseI TTAA 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 67, 229
MvaI CCWGG 2 cut(s) 67, 229
MwoI GCNNNNNNNGC 2 cut(s) 177, 314
NdeII GATC 4 cut(s) 220, 322, 326, 347
NlaIII CATG 1 cut(s) 333
PkrI GCNGC 1 cut(s) 59
PshBI ATTAAT 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 65, 227
PspGI CCWGG 2 cut(s) 65, 227
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 4 cut(s) 220, 322, 326, 347
ScrFI CCNGG 2 cut(s) 67, 229
SduI GDGCHC 2 cut(s) 213, 319
SetI ASST 4 cut(s) 59, 213, 262, 268
Sse9I AATT 2 cut(s) 121, 235
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 126, 344
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 65, 227
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 325
TasI AATT 2 cut(s) 121, 235
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 96
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 1 cut(s) 96
VneI GTGCAC 1 cut(s) 315
VspI ATTAAT 1 cut(s) 234
XagI CCTNNNNNAGG 1 cut(s) 342
XmaJI CCTAGG 1 cut(s) 343
XspI CTAG 2 cut(s) 126, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.