pycom07g07210

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
6544334 .. 6544762
429 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07210.1

Sequence Viewer

Length: 300 bp
ATGAGTCCAGAACCGTTGCCGACAGTATGCAGTATCTTTAGTCTCACTTCTTCTGGTCAATGGTGCCATTACATTTTAGGTGGAAGCTGCACTGTCTGGTTTCAGGATGGGTACAACCCAGTGGCAGTTGATATGAAGGGGGACGAGGACAATTCTAGGAGCAATAAGAAGAGAAGTCCATTCAGTGCTGATTTTTTCGGTTCTCTCTGCTATACTTTCCAGCACGGGAAATTTAGGGAGCTCTACGGTAATCTGACTAGATGCTTAGCTGGATATTTGTTCTGCTTCAGCTTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.12

Weight (kDa)

6.68

Isoelectric Point (pI)

65.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020437)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 271
AfaI GTAC 1 cut(s) 113
AluBI AGCT 4 cut(s) 87, 241, 269, 291
AluI AGCT 4 cut(s) 87, 241, 269, 291
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 230
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 2 cut(s) 156, 258
BisI GCNGC 1 cut(s) 88
BlpI GCTNAGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 243
BslFI GGGAC 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1720I GCTNAGC 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 119
Bst4CI ACNGT 4 cut(s) 15, 25, 94, 248
Bst6I CTCTTC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 3 cut(s) 90, 126, 190
Csp6I GTAC 1 cut(s) 112
CviJI RGCY 5 cut(s) 87, 241, 269, 291, 297
CviKI_1 RGCY 5 cut(s) 87, 241, 269, 291, 297
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 243
FaiI YATR 3 cut(s) 28, 134, 213
FaqI GGGAC 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 2 cut(s) 156, 258
GluI GCNGC 1 cut(s) 88
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 2 cut(s) 8, 104
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 4 cut(s) 15, 25, 94, 248
HpyCH4V TGCA 2 cut(s) 30, 90
HpyF3I CTNAG 1 cut(s) 265
LmnI GCTCC 2 cut(s) 159, 238
LpnPI CCDG 7 cut(s) 21, 39, 82, 89, 132, 233, 255
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 251
MaeI CTAG 2 cut(s) 156, 258
MboII GAAGA 2 cut(s) 42, 181
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 2 cut(s) 151, 230
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 89
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 65
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 243
SatI GCNGC 1 cut(s) 88
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 243
SetI ASST 5 cut(s) 82, 89, 243, 271, 293
SfaNI GCATC 1 cut(s) 251
Sse9I AATT 2 cut(s) 151, 230
SspMI CTAG 2 cut(s) 156, 258
SstI GAGCTC 1 cut(s) 243
TaaI ACNGT 4 cut(s) 15, 25, 94, 248
TasI AATT 2 cut(s) 151, 230
TscAI CASTG 3 cut(s) 97, 126, 190
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 149
TspRI CASTG 3 cut(s) 97, 126, 190
XapI RAATTY 1 cut(s) 230
XspI CTAG 2 cut(s) 156, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.