RchiOBHm_Chr1g0344131

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
36475530 .. 36477709
2180 bp
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UTR
Exon/CDS
Intron
PRQ57060

Sequence Viewer

Length: 198 bp
ATGAGTTCATCCAAACACAGTGCGGAGAAGGGAAACGAAGGTGGGAGTTTTGCAGCCTGGTTTCAGGATGGGAACAGCCCAGTGGCTGTTGAACTAAGAGGAGATGGGAACACTTTTTCAAGTACTGAGAAGAGAAGTCCTGTCAGTGCTGATTGTTTTGGTTCAATTTGCTATCGCTTCCAGCATGGGAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

6.99

Weight (kDa)

6.7

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020437)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 23
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 1 cut(s) 124
AgsI TTSAA 3 cut(s) 92, 120, 165
AjnI CCWGG 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 191
BbvI GCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 62, 98
BciT130I CCWGG 1 cut(s) 58
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BmrI ACTGGG 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 8, 73
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 65
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 95, 126
BstF5I GGATG 2 cut(s) 8, 73
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 8, 73
BtsIMutI CAGTG 3 cut(s) 25, 87, 151
CaiI CAGNNNCTG 1 cut(s) 86
Csp6I GTAC 1 cut(s) 123
CviAII CATG 1 cut(s) 185
CviJI RGCY 3 cut(s) 56, 78, 86
CviKI_1 RGCY 3 cut(s) 56, 78, 86
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 2 cut(s) 95, 126
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 188
FaiI YATR 1 cut(s) 186
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
Hin1II CATG 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 22, 32
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 95, 126
Hsp92II CATG 1 cut(s) 188
LpnPI CCDG 6 cut(s) 43, 50, 70, 93, 153, 194
Lsp1109I GCAGC 1 cut(s) 65
MboII GAAGA 1 cut(s) 142
MluCI AATT 2 cut(s) 165, 191
MnlI CCTC 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
NlaIII CATG 1 cut(s) 188
PkrI GCNGC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 1 cut(s) 54
ScaI AGTACT 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 58
SetI ASST 1 cut(s) 43
SgeI CNNG 7 cut(s) 69, 70, 77, 92, 132, 152, 193
Sse9I AATT 2 cut(s) 165, 191
SsiI CCGC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 20
TasI AATT 2 cut(s) 165, 191
TatI WGTACW 1 cut(s) 122
TscAI CASTG 3 cut(s) 25, 87, 151
TseI GCWGC 1 cut(s) 53
TspRI CASTG 3 cut(s) 25, 87, 151
XapI RAATTY 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.