pycom07g07370

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0020437
Physical Location & Seq
Forward (+)
6677276 .. 6677560
285 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07370.1

Sequence Viewer

Length: 285 bp
ATGAAGGGAGACGAGGACAATTCTAGGAGCAATAAGAAGAGAAATCCATTCAGTGCTGATTTTTTCAGCTCTCTCTGCTATACTTTCCAGCACGGGAAACTTATAGAGCTCTACGGTGATCTAACCAGGATTGATTCTCGTCTCGATATTTGTTTAGCTTCAGCTTTGGATAAAAGGGTTATTTATGGTTTGAAGAGTTCCTCTGCTAATAGTGCAAAAGATCTGGTGTCCTCCCCTAGGATCAATATAATCTTTCAGCAGCAGGTATTTCTATTTATACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3769

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

9.03

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020437)

Species Orthologous Gene IDs
pyrus_communis pycom07g07170 pycom07g07210 pycom07g07290 pycom07g07370
rosa_chinensis RchiOBHm_Chr1g0344131
rosa_multiflora Rmu_sc0001568.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AclWI GGATC 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 4 cut(s) 69, 109, 158, 164
AluI AGCT 4 cut(s) 69, 109, 158, 164
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 2 cut(s) 3, 146
AlwI GGATC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 259
AspA2I CCTAGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 128
AvrII CCTAGG 1 cut(s) 236
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 3, 146
BfaI CTAG 2 cut(s) 24, 237
BfuAI ACCTGC 1 cut(s) 253
BglII AGATCT 1 cut(s) 220
BisI GCNGC 1 cut(s) 260
BlnI CCTAGG 1 cut(s) 236
BlsI GCNGC 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 2 cut(s) 3, 146
BsmBI CGTCTC 2 cut(s) 3, 146
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 3 cut(s) 118, 220, 240
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 3 cut(s) 118, 220, 240
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 32, 188
BstENI CCTNNNNNAGG 1 cut(s) 235
BstKTI GATC 3 cut(s) 121, 223, 243
BstMAI GTCTC 2 cut(s) 3, 146
BstMBI GATC 3 cut(s) 118, 220, 240
BstMWI GCNNNNNNNGC 2 cut(s) 75, 212
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 253
CviJI RGCY 4 cut(s) 69, 109, 158, 164
CviKI_1 RGCY 4 cut(s) 69, 109, 158, 164
DpnI GATC 3 cut(s) 120, 222, 242
DpnII GATC 3 cut(s) 118, 220, 240
Eam1104I CTCTTC 2 cut(s) 32, 188
EarI CTCTTC 2 cut(s) 32, 188
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 236
Esp3I CGTCTC 2 cut(s) 3, 146
FaiI YATR 5 cut(s) 81, 104, 186, 248, 278
Fnu4HI GCNGC 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 260
FspBI CTAG 2 cut(s) 24, 237
GluI GCNGC 1 cut(s) 260
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 212
Kzo9I GATC 3 cut(s) 118, 220, 240
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 5 cut(s) 101, 112, 139, 209, 248
Lsp1109I GCAGC 1 cut(s) 271
MaeI CTAG 2 cut(s) 24, 237
MalI GATC 3 cut(s) 120, 222, 242
MboI GATC 3 cut(s) 118, 220, 240
MboII GAAGA 2 cut(s) 49, 205
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 19
MnlI CCTC 3 cut(s) 7, 211, 241
MseI TTAA 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 2 cut(s) 75, 212
NdeII GATC 3 cut(s) 118, 220, 240
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 220
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 1 cut(s) 260
Sau3AI GATC 3 cut(s) 118, 220, 240
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 1 cut(s) 111
SetI ASST 6 cut(s) 71, 111, 160, 166, 267, 283
Sse9I AATT 1 cut(s) 19
SspMI CTAG 2 cut(s) 24, 237
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 19
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 58
XagI CCTNNNNNAGG 1 cut(s) 235
XmaJI CCTAGG 1 cut(s) 236
XspI CTAG 2 cut(s) 24, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.